2009-11-05 12:34 edwards * tests/t_leapfrog/t_leapfrog.prec_2flav_slic.ini.xml: Some new experimental input. 2009-11-02 16:52 kostas * lib/actions/ferm/invert/syssolver_linop_aggregate.cc: added commented out lines 2009-11-02 16:49 kostas * lib/actions/ferm/invert/syssolver_linop_eigbicg.h: added code to switch on optimized vs non-optimized eigbicg (for the moment this does not exist) 2009-11-02 16:36 kostas * lib/actions/ferm/invert/syssolver_linop_aggregate.cc: ... 2009-11-02 16:34 kostas * lib/actions/ferm/invert/: syssolver_OPTeigbicg.cc, syssolver_OPTeigbicg.h, syssolver_linop_OPTeigbicg.cc, syssolver_linop_OPTeigbicg.h, syssolver_linop_aggregate.cc: renamed the optbicg codes to conform with conventions 2009-11-02 16:29 kostas * lib/actions/ferm/invert/: containers.h, syssolver_OPTeigbicg.cc, syssolver_OPTeigbicg.h: moved forward with the eigBiCG code 2009-10-30 13:12 edwards * lib/util/ferm/disk_obj.h: First stab at a DB like object using disks. 2009-10-24 09:47 kostas * lib/actions/ferm/invert/: syssolver_OPTeigbicg.cc, syssolver_OPTeigbicg.h: contineued the integration of EigBiCG 2009-10-22 16:57 kostas * lib/actions/ferm/invert/: containers.h, syssolver_OPTeigbicg.h, syssolver_OPTeigbicg_params.cc, syssolver_OPTeigbicg_params.h: continue adding eigbicg 2009-10-21 23:22 kostas * lib/actions/ferm/invert/: syssolver_OPTeigbicg.cc, syssolver_OPTeigbicg.h: Initial checking of eigbicg solver. (a copy of eigcg for now...) 2009-10-21 23:15 kostas * lib/actions/ferm/invert/: syssolver_OPTeigbicg_params.cc, syssolver_OPTeigbicg_params.h: Initial version of eigbicg parameters 2009-10-21 17:03 kostas * other_libs/qdp-lapack/: aclocal.m4, configure, include/bicgstab.h, include/qdp-lapack_eigbicg.h, lib/IncrEigbicg_stub.c, lib/Makefile.am: updated the compilation system 2009-10-21 16:54 kostas * other_libs/qdp-lapack/lib/: G_eval.c, IncrEigbicg.c, bicgstab.c, biortho.c, conjugate.c, eigbicg.c, sort.c: added the C files for eigbicg 2009-10-21 16:50 kostas * other_libs/qdp-lapack/: include/G_eval.h, include/bicgstab.h, include/conjugate.h, include/qdp-lapack_Complex.h, include/qdp-lapack_IncrEigbicg.h, include/qdp-lapack_biortho.h, include/qdp-lapack_eigbicg.h, include/qdp-lapack_numerical_private.h, include/qdp-lapack_restart_X.h, include/sort.h, lib/Complex.c, lib/IncrEigpcg.c, lib/IncrEigpcg_orthogonalize.c, lib/eigpcg.c, lib/restart_X.c: inintial addition of eigbicg stuff 2009-10-16 09:37 bjoo * lib/actions/ferm/invert/quda_solvers/syssolver_linop_quda_clover.h: A nicety... Removed unneeded call 2009-10-15 07:30 mpeardon * NEWS: Assassinated Robert Ewdards. 2009-10-13 09:56 edwards * lib/: Makefile.am, util/ferm/key_hadron_2pt_corr.cc, util/ferm/key_hadron_2pt_corr.h, util/ferm/key_hadron_3pt_corr.cc, util/ferm/key_hadron_3pt_corr.h: Added keys for 2pt and 3pt correlators. 2009-10-12 13:39 bjoo * lib/actions/ferm/invert/quda_solvers/: syssolver_linop_quda_clover.h, syssolver_linop_quda_wilson.h: A few dp build related hiccups 2009-10-09 15:03 bjoo * lib/: Makefile.am, actions/ferm/invert/quda_solvers/syssolver_linop_quda_clover.h, actions/ferm/invert/quda_solvers/syssolver_linop_quda_wilson.h, actions/ferm/invert/quda_solvers/syssolver_quda_wilson_params.cc, actions/ferm/invert/quda_solvers/syssolver_quda_wilson_params.h, meas/gfix/axgauge.cc, meas/gfix/temporal_gauge.cc: Tydied up the gaugetransform code 2009-10-09 11:33 bjoo * lib/meas/gfix/: axgauge.cc, axgauge.h, coulgauge.cc, coulgauge.h, gfix.h, grelax.cc, grelax.h, polar_dec.cc, polar_dec.h, rot_colvec.cc, rot_colvec.h, temporal_gauge.cc, temporal_gauge.h: Reverted axgauge.cc and h to version 3.0 2009-10-09 09:59 bjoo * lib/actions/ferm/invert/quda_solvers/syssolver_linop_quda_clover.cc, lib/actions/ferm/invert/quda_solvers/syssolver_linop_quda_clover.h, lib/actions/ferm/invert/quda_solvers/syssolver_linop_quda_wilson.cc, lib/actions/ferm/invert/quda_solvers/syssolver_linop_quda_wilson.h, lib/actions/ferm/invert/quda_solvers/syssolver_quda_clover_params.cc, lib/actions/ferm/invert/quda_solvers/syssolver_quda_clover_params.h, lib/actions/ferm/invert/quda_solvers/syssolver_quda_wilson_params.cc, lib/actions/ferm/invert/quda_solvers/syssolver_quda_wilson_params.h, lib/meas/gfix/axgauge.cc, mainprogs/tests/t_invert4_precwilson.cc: Got Axial Gauge Working for Clover 2009-10-08 13:45 edwards * lib/meas/gfix/: axgauge.cc, axgauge.h: Added a version that returns the gauge rotation matrix. Commented out the bit that would broadcast the last time slice. 2009-10-07 20:52 bjoo * lib/actions/ferm/invert/quda_solvers/syssolver_linop_quda_clover.cc, lib/actions/ferm/invert/quda_solvers/syssolver_linop_quda_clover.h, lib/init/chroma_init.cc, mainprogs/tests/t_invert4_precwilson.cc: Added various runtime options plus the -cudadev option to select cuda device 2009-10-06 16:35 bjoo * lib/: Makefile.am, actions/ferm/linop/clover_term_qdp_w.h, meas/gfix/axgauge.cc, meas/gfix/axgauge.h: Added stuff 2009-10-06 16:34 bjoo * lib/actions/ferm/invert/quda_solvers/: enum_quda_io.cc, enum_quda_io.h, syssolver_linop_quda_clover.cc, syssolver_linop_quda_clover.h, syssolver_quda_clover_params.cc, syssolver_quda_clover_params.h: Now packs in Rons format. Made reconstruct, and precisions into optional params. Defaults should do the right thing 2009-10-05 16:19 bjoo * lib/actions/ferm/invert/quda_solvers/: syssolver_linop_quda_clover.cc, syssolver_linop_quda_clover.h, syssolver_linop_quda_wilson.cc, syssolver_linop_quda_wilson.h, syssolver_quda_clover_params.cc, syssolver_quda_clover_params.h, syssolver_quda_wilson_params.cc, syssolver_quda_wilson_params.h: Tweaked the QUDA interface. Allowed Verbosity Option. Made solvers have floating precision 2009-10-01 16:21 bjoo * lib/actions/ferm/: invert/quda_solvers/syssolver_linop_quda_clover.cc, invert/quda_solvers/syssolver_linop_quda_clover.h, invert/quda_solvers/syssolver_linop_quda_wilson.cc, invert/quda_solvers/syssolver_linop_quda_wilson.h, linop/clover_term_qdp_w.h: Clover GPU inverter now runs 2009-09-29 19:10 bjoo * aclocal.m4, configure, lib/Makefile.am, lib/actions/ferm/invert/syssolver_linop_aggregate.cc, lib/actions/ferm/invert/quda_solvers/syssolver_linop_quda_clover.cc, lib/actions/ferm/invert/quda_solvers/syssolver_linop_quda_clover.h, lib/actions/ferm/linop/clover_term_qdp_w.h: Initial QUDA Clover interface. SOmething is wrong with the off diagonal elements maybe? 2009-09-29 07:20 bjoo * lib/actions/ferm/invert/: syssolver_linop_aggregate.cc, quda_solvers/syssolver_linop_quda_wilson.cc, quda_solvers/syssolver_quda_clover_params.cc, quda_solvers/syssolver_quda_clover_params.h: Oops. I broke the nightlies. This should fix 2009-09-28 13:24 bjoo * lib/actions/ferm/invert/quda_solvers/: syssolver_cg_quda_wilson_params.cc, syssolver_cg_quda_wilson_params.h, syssolver_linop_cg_quda_wilson_single.cc, syssolver_linop_cg_quda_wilson_single.h, syssolver_linop_quda_wilson.cc, syssolver_linop_quda_wilson.h, syssolver_quda_wilson_params.cc, syssolver_quda_wilson_params.h: Renamed these 2009-09-25 15:28 bjoo * lib/actions/ferm/invert/quda_solvers/syssolver_linop_cg_quda_wilson_single.cc, lib/init/chroma_init.cc, mainprogs/tests/t_invert4_precwilson.cc: Commit Dammit 2009-09-25 15:22 colin * lib/meas/pbp/pbp.h: Tired on no newline warning 2009-09-25 14:57 bjoo * lib/actions/ferm/invert/quda_solvers/syssolver_cg_quda_wilson_params.h, lib/actions/ferm/invert/quda_solvers/syssolver_linop_cg_quda_wilson_single.cc, lib/actions/ferm/invert/quda_solvers/syssolver_linop_cg_quda_wilson_single.h, AUTHORS, COPYING, INSTALL, Makefile.am, NEWS, README, TODO, acinclude.m4, aclocal.m4, chroma-config.in, configure, configure.ac, lib/actions/ferm/invert/quda_solvers/syssolver_cg_quda_wilson_params.cc: Wilson QUDA solver works 2009-09-25 08:41 bjoo * aclocal.m4, configure, configure.ac, lib/Makefile.am, lib/actions/ferm/invert/syssolver_linop_aggregate.cc, lib/actions/ferm/invert/quda_solvers/syssolver_cg_quda_wilson_params.cc, lib/actions/ferm/invert/quda_solvers/syssolver_cg_quda_wilson_params.h, lib/actions/ferm/invert/quda_solvers/syssolver_linop_cg_quda_wilson_single.cc, lib/actions/ferm/invert/quda_solvers/syssolver_linop_cg_quda_wilson_single.h, mainprogs/tests/Makefile.am, mainprogs/tests/t_invert4_precwilson.cc: OK. Interface with QUDA calls solver etc, but gets wrong answer. Now for the bughunt 2009-09-23 13:18 bjoo * aclocal.m4, configure, configure.ac, lib/Makefile.am, lib/chroma_config_internal.h.in, mainprogs/main/Makefile.am, mainprogs/tests/Makefile.am: Added autoconf hooks for linking against the QUDA Library 2009-09-21 11:34 colin * lib/meas/laph/: baryon_operator.cc, baryon_operator.h, dilution_scheme_info.cc, dilution_scheme_info.h, field_smearing_handler.cc, field_smearing_handler.h, field_smearing_info.cc, field_smearing_info.h, gauge_configuration_handler.cc, gauge_configuration_handler.h, gauge_configuration_info.cc, gauge_configuration_info.h, inverter_info.cc, inverter_info.h, laph.h, laph_noise_info.cc, laph_noise_info.h, pointer.h, quark_info.cc, quark_info.h, quark_source_sink_handler.cc, quark_source_sink_handler.h, time_slices.h, xml_help.cc, xml_help.h: Tidying up obsolete code 2009-09-17 10:48 colin * lib/meas/smear/: displace.cc, displace.h: Added routine to displace one direction with a subset 2009-09-16 17:28 colin * lib/meas/inline/hadron/: inline_stoch_laph_baryon_w.cc, inline_stoch_laph_baryon_w.h, inline_stoch_laph_quark_w.cc, inline_stoch_laph_quark_w.h: Removal of outdated code. 2009-09-16 17:23 colin * lib/meas/inline/hadron/inline_hadron_aggregate.cc: laph commented out for now 2009-09-16 17:21 colin * lib/meas/meas.h: Removed laph.h 2009-09-16 17:21 colin * lib/Makefile.am: minor update 2009-09-15 09:33 edwards * tests/chroma/hadron/colorvec_matelem/: colorvec_matelem.ini.xml, colorvec_matelem.out.xml: Updated regression input and output. 2009-09-14 17:06 edwards * lib/meas/inline/hadron/: inline_baryon_matelem_colorvec_w.cc, inline_baryon_matelem_colorvec_w.h: Add a flag that checks whether derivatives or displacements are to be used for the elementals. 2009-09-14 17:05 edwards * lib/meas/inline/hadron/inline_baryon_block_matelem_w.cc: Added a default flag of false for derivatives. 2009-09-14 17:05 edwards * lib/meas/smear/: disp_colvec_map.cc, disp_colvec_map.h: Switched to using a flag whether to use derivatives or displacements. 2009-09-14 17:04 edwards * lib/meas/smear/: displace.cc, displace.h: Added a rightNabla for LatticeFermion and LatticeColorVector. 2009-09-14 16:52 tag chroma3-36-1 2009-09-14 16:52 edwards * NEWS: Info on 3.36.1 2009-09-14 16:50 edwards * lib/meas/inline/hadron/: inline_annih_prop_matelem_colorvec_w.cc, inline_baryon_matelem_colorvec_w.cc, inline_genprop_matelem_colorvec_w.cc, inline_meson_matelem_colorvec_w.cc, inline_prop_matelem_colorvec_w.cc: Added a check of the output db file. If it exists, do not insert the metadata again. 2009-09-14 16:29 edwards * aclocal.m4, configure: Induced changes 2009-09-14 16:29 edwards * configure.ac: Changed to 3.36.1 2009-09-12 00:20 edwards * lib/meas/laph/xml_help.cc: Changed fileExists to use the one in FILEDB. 2009-09-04 08:47 bjoo * lib/actions/ferm/invert/: bicgstab_kernels_scalarsite.cc, bicgstab_kernels_scalarsite.h, ord_cxmayf_kernel_generic.h, ord_cxmayf_kernel_sse.h, ord_ib_rxupdate_kernel_generic.h, ord_ib_rxupdate_kernel_sse.h, ord_ib_stupdates_kernel_generic.h, ord_ib_stupdates_kernel_sse.h, ord_ib_zvupdates_kernel_generic.h, ord_ib_zvupdates_kernel_sse.h, ord_norm2x_cdotxy_kernel_generic.h, ord_norm2x_cdotxy_kernel_sse.h, ord_xmay_normx_cdotzx_kernel_generic.h, ord_xmay_normx_cdotzx_kernel_sse.h, ord_xmyz_normx_kernel_generic.h, ord_xmyz_normx_kernel_sse.h, ord_xpaypbz_kernel_generic.h, ord_xpaypbz_kernel_sse.h, ord_yxpaymabz_kernel_generic.h, ord_yxpaymabz_kernel_sse.h: Reworked kernels to handle odd number of threads 2009-09-03 11:45 colin * lib/meas/inline/hadron/inline_hadron_aggregate.cc: Added stoch laph baryon 2009-09-03 11:44 colin * lib/meas/inline/hadron/: inline_stoch_laph_baryon_w.cc, inline_stoch_laph_baryon_w.h: Further work 2009-09-03 11:43 colin * lib/meas/laph/: baryon_operator.cc, baryon_operator.h, laph.h, quark_source_sink_handler.cc: Added baryonoperator 2009-09-03 11:40 colin * lib/Makefile.am: Added baryon_operator.h .cc 2009-09-02 17:06 colin * lib/meas/laph/: quark_info.cc, quark_source_sink_handler.cc, xml_help.cc: Some bug fixes...nearly final. 2009-09-02 10:57 colin * lib/meas/laph/: laph_noise_info.cc, quark_source_sink_handler.cc, quark_source_sink_handler.h: Minor tweaks 2009-09-01 21:48 colin * lib/meas/laph/quark_source_sink_handler.cc: Added inverter info to record xml in quark_source_sink_handler 2009-09-01 15:51 jbulava * lib/actions/ferm/invert/invibicgstab.cc: Same bug fixed as invbicgstab.cc 2009-09-01 15:25 jbulava * lib/actions/ferm/invert/invbicgstab.cc: Fixed bug in early termination. Added ret.n_count = MaxBiCGStab at beginning. 2009-09-01 14:42 colin * lib/meas/laph/: inverter_info.cc, inverter_info.h, quark_source_sink_handler.cc: Last few tweaks for version 1 code. 2009-09-01 11:41 colin * lib/meas/laph/: inverter_info.cc, inverter_info.h, laph.h, quark_source_sink_handler.cc, time_slices.h: Minor modifications towards completion. 2009-09-01 11:40 colin * lib/Makefile.am: Added time_slices.h 2009-08-30 19:56 colin * lib/meas/inline/hadron/inline_stoch_laph_quark_w.cc: Nearing completion 2009-08-30 19:55 colin * lib/meas/laph/: dilution_scheme_info.cc, dilution_scheme_info.h, field_smearing_handler.cc, gauge_configuration_handler.cc, inverter_info.cc, laph_noise_info.cc, laph_noise_info.h, quark_source_sink_handler.cc, quark_source_sink_handler.h: Further refinements ... converging towards completion 2009-08-29 19:23 colin * lib/meas/laph/quark_source_sink_handler.cc: Further work. 2009-08-29 14:04 colin * lib/meas/inline/hadron/: inline_stoch_laph_quark_w.cc, inline_stoch_laph_quark_w.h: Further development (still unfinished) 2009-08-29 13:33 colin * lib/meas/laph/: dilution_scheme_info.cc, dilution_scheme_info.h, field_smearing_handler.cc, field_smearing_handler.h, field_smearing_info.cc, field_smearing_info.h, gauge_configuration_handler.cc, gauge_configuration_handler.h, gauge_configuration_info.cc, gauge_configuration_info.h, inverter_info.cc, inverter_info.h, laph_noise_info.cc, laph_noise_info.h, quark_info.cc, quark_info.h, quark_source_sink_handler.cc, quark_source_sink_handler.h, xml_help.cc: Significant code development, but still unfinished. 2009-08-27 15:22 edwards * lib/meas/inline/hadron/inline_genprop_matelem_colorvec_w.cc: Added on a 1k padding for the metadata. 2009-08-26 12:16 edwards * lib/meas/inline/hadron/inline_genprop_matelem_colorvec_w.cc: Switched back to older genprop code - before the switch to time-slice. 2009-08-25 13:14 tag chroma3-36-0 2009-08-25 13:14 edwards * NEWS: Info on 3.36.0 2009-08-25 13:09 edwards * aclocal.m4, configure: Induced changes 2009-08-25 13:09 edwards * configure.ac: Changed to 3.36.0 2009-08-25 13:08 edwards * lib/meas/inline/hadron/inline_genprop_matelem_colorvec_w.cc: Switched the algorithm for how contractions. Now, it is more time-slice based. So, contractions are done for each time-slice in succession, and only over the plateau region. This can be potentially SLOWER than before. To see the speed-up, the user must make sure the geometry has time local to a compute node. However, the code is always correct even if the "geom" flag is not used. 2009-08-25 13:06 edwards * lib/meas/smear/: displace.cc, displace.h: Added a subset version. 2009-08-22 22:55 edwards * tests/chroma/glue/qactden/qactden.ini.xml: New inline measurement. 2009-08-22 22:46 edwards * lib/meas/inline/glue/: inline_qactden.cc, inline_qactden.h: Removed k5. 2009-08-22 16:05 edwards * lib/meas/glue/: qactden.cc, qactden.h: Fixed calling sequence. 2009-08-22 16:04 edwards * lib/: meas/inline/glue/inline_glue_aggregate.cc, Makefile.am: Added inline_qactden. 2009-08-22 16:03 edwards * lib/meas/inline/glue/: inline_qactden.cc, inline_qactden.h, inline_qnaive.cc, inline_qnaive.h: Implemented an inline measurement for qactden. Changed qnaive (and qactden) to follow the newer model of inline calls, namely the Params and InlineMeas all within a single namespace. 2009-08-22 15:17 edwards * lib/meas/glue/: qactden.cc, qactden.h: Converted (from SZIN) and now compiles. 2009-08-22 15:16 edwards * lib/Makefile.am: Added qactden.{h,cc}. 2009-08-21 16:51 colin * lib/meas/laph/quark_source_sink_handler.cc: Minor changes to circumvent the infamous XMLReader bug. 2009-08-21 10:54 colin * lib/meas/inline/hadron/: inline_stoch_laph_quark_w.cc, inline_stoch_laph_quark_w.h: Finally a version of inline_stoch_laph_quark that will run (hopefully) 2009-08-21 10:53 colin * lib/Makefile.am: Minor change quark_action_info to quark_info 2009-08-21 10:42 colin * lib/meas/laph/: dilution_scheme_info.cc, dilution_scheme_info.h, field_smearing_handler.cc, field_smearing_handler.h, field_smearing_info.cc, field_smearing_info.h, gauge_configuration_handler.cc, gauge_configuration_handler.h, gauge_configuration_info.cc, gauge_configuration_info.h, inverter_info.cc, inverter_info.h, laph.h, laph_noise_info.cc, laph_noise_info.h, quark_action_info.cc, quark_action_info.h, quark_info.cc, quark_info.h, quark_source_sink_handler.cc, quark_source_sink_handler.h, xml_help.cc, xml_help.h: Significant code changes. 2009-08-05 11:26 jbulava * lib/meas/inline/hadron/inline_stoch_meson_w.cc: Removed the check that requires the diluted sources to reproduce the entire undiluted source. This check fails if all t0's are not used with full time dilution. 2009-08-04 15:10 colin * lib/meas/laph/: field_smearing_handler.cc, gauge_configuration_handler.cc, gauge_configuration_handler.h, quark_source_sink_handler.cc: Minor updates to the Laph Env 2009-08-04 08:43 bjoo * lib/Makefile.am: Fixed Makefile issues reported by Christian Hagen 2009-08-03 11:19 bjoo * other_libs/qdp-lapack/lib/lapack_stub.cc: Added a missing stub to lapack stub.cc 2009-07-31 16:04 colin * lib/meas/laph/field_smearing_handler.cc: Added #include to enable bad_cast in field_smearing_handler 2009-07-31 15:20 colin * lib/Makefile.am: Added quark_source_sink_handler.h and .cc 2009-07-31 15:15 colin * lib/meas/inline/hadron/inline_stoch_laph_quark_w.cc: Minor update...still no where near finished. 2009-07-31 15:13 colin * lib/meas/laph/: dilution_scheme_info.cc, dilution_scheme_info.h, field_smearing_handler.cc, field_smearing_handler.h, field_smearing_info.cc, field_smearing_info.h, gauge_configuration_handler.cc, gauge_configuration_handler.h, gauge_configuration_info.cc, gauge_configuration_info.h, inverter_info.cc, inverter_info.h, laph.h, laph_noise_info.cc, laph_noise_info.h, pointer.h, quark_action_info.cc, quark_action_info.h, quark_source_sink_handler.cc, quark_source_sink_handler.h, xml_help.cc, xml_help.h: Added several info and handler classes to the LaphEnv. Quark sources and sinks now implemented. On to baryon, mesons.... 2009-07-31 10:09 bjoo * lib/actions/ferm/invert/syssolver_mdagm_OPTeigcg.cc, lib/meas/inline/hadron/inline_disco_eigcg_w.cc, lib/meas/inline/hadron/inline_disco_eo_eigcg_w.cc, other_libs/qdp-lapack/include/fortran_lapack.h, other_libs/qdp-lapack/lib/fortran_lapack.cc, tests/regres.pl: Precision Mucking about in the DISCO measurements and more EigCG Stuff 2009-07-30 16:33 bjoo * aclocal.m4, configure, lib/actions/ferm/invert/syssolver_mdagm_OPTeigcg.cc, other_libs/qdp-lapack/lib/fortran_lapack.cc: Made EigCG work from a Double Precision Build 2009-07-23 10:56 jbulava * lib/meas/laph/gauge_configuration_info.h: Bug fix. 2009-07-22 19:13 jbulava * lib/meas/laph/gauge_configuration_info.h: Added some utility methods. 2009-07-21 22:44 edwards * lib/meas/smear/wupp_smear.cc: Put back in #error statement. 2009-07-21 22:43 edwards * lib/meas/smear/wupp_smear.cc: Working on this. Not ready yet. 2009-07-21 22:26 colin * lib/: Makefile.am, meas/laph/dilution_scheme_info.cc, meas/laph/dilution_scheme_info.h, meas/laph/field_smearing.cc, meas/laph/field_smearing.h, meas/laph/field_smearing_info.cc, meas/laph/field_smearing_info.h, meas/laph/laph.h, meas/laph/laph_noise_info.cc, meas/laph/laph_noise_info.h: [no log message] 2009-07-20 22:10 edwards * tests/chroma/hadron/gauge_transf/gauge_transf.out.xml: Updated regression output. 2009-07-18 15:53 edwards * tests/chroma/hadron/colorvec_matelem/: colorvec_matelem.ini.xml, colorvec_matelem.out.xml: Use less baryon elementals. 2009-07-18 12:54 jbulava * lib/: Makefile.am, meas/inline/hadron/inline_stoch_laph_quark_w.cc, meas/laph/inverter_info.cc, meas/laph/inverter_info.h, meas/laph/laph.h, meas/laph/quark_action_info.cc: Another utility, to handle the inverter info. 2009-07-18 11:18 jbulava * lib/: Makefile.am, meas/inline/hadron/inline_stoch_laph_quark_w.cc: Induced changes. 2009-07-18 11:17 jbulava * lib/meas/laph/: laph.h, quark_action_info.cc, quark_action_info.h: More utilities. This is a simple wrapper over the quark action. 2009-07-17 23:29 jbulava * lib/meas/laph/gauge_configuration_info.cc: Minor bug_fix 2009-07-17 22:44 jbulava * lib/meas/inline/hadron/inline_stoch_laph_quark_w.cc: Bug fix. 2009-07-17 22:34 jbulava * lib/: Makefile.am, meas/inline/hadron/inline_hadron_aggregate.cc, meas/inline/hadron/inline_stoch_laph_quark_w.cc, meas/inline/hadron/inline_stoch_laph_quark_w.h, meas/laph/gauge_configuration_info.h: Induced changes. 2009-07-17 22:29 jbulava * lib/meas/laph/: field_smearing_info.cc, field_smearing_info.h, gauge_configuration_handler.cc, gauge_configuration_info.cc, gauge_configuration_info.h, laph.h, laph_noise_info.cc, laph_noise_info.h: More utils. 2009-07-17 17:34 edwards * lib/meas/inline/hadron/inline_static_prop_colorvec_w.cc: Changed conventions for how the static quark is computed. Should not be time-reversed now. Passes random gauge transformation tests (looked at a two-static pion correlator). 2009-07-17 17:32 edwards * lib/meas/inline/glue/inline_random_transf_gauge.cc: Added printing of observables after a gauge transformation. 2009-07-17 15:37 jbulava * lib/meas/inline/hadron/inline_stoch_laph_quark_w.cc: Induced changes 2009-07-17 15:14 bjoo * AUTHORS, COPYING, INSTALL, Makefile.am, NEWS, README, TODO, acinclude.m4, aclocal.m4, chroma-config.in, configure, configure.ac, lib/actions/ferm/fermacts/eoprec_dwf_fermact_array_w.h, lib/actions/ferm/invert/syssolver_linop.h, lib/actions/ferm/invert/syssolver_linop_eigcg_array.h, lib/actions/ferm/invert/syssolver_mdagm.h, other_libs/cpp_wilson_dslash/aclocal.m4, other_libs/cpp_wilson_dslash/configure, other_libs/cpp_wilson_dslash/include/cpp_dslash_parscalar_mvv_recons_32bit_c.h, other_libs/cpp_wilson_dslash/include/cpp_dslash_parscalar_recons_32bit_c.h, other_libs/cpp_wilson_dslash/include/cpp_dslash_parscalar_recons_64bit_c.h, other_libs/cpp_wilson_dslash/include/cpp_dslash_parscalar_utils_32bit.h, other_libs/cpp_wilson_dslash/include/cpp_dslash_parscalar_utils_64bit.h, other_libs/cpp_wilson_dslash/lib/Makefile.am, other_libs/cpp_wilson_dslash/lib/cpp_dslash_parscalar_utils_32bit.cc: Cleaned up a bunch for XLC 2009-07-17 15:12 jbulava * lib/Makefile.am: Induced changes 2009-07-17 15:11 jbulava * lib/meas/laph/: gauge_configuration.cc, gauge_configuration.h, gauge_configuration_handler.cc, gauge_configuration_handler.h, gauge_configuration_info.cc, gauge_configuration_info.h, laph.h: Some mild restructuring 2009-07-17 11:23 jbulava * lib/: Makefile.am, meas/laph/field_smearing.cc, meas/laph/field_smearing.h, meas/laph/gauge_configuration.cc, meas/laph/gauge_configuration.h, meas/laph/laph.h, meas/laph/xml_help.cc, meas/laph/xml_help.h: More utilities for the LapH smearing code. 2009-07-17 10:53 edwards * lib/meas/inline/io/: inline_eigen_bin_lime_colvec_read_obj.cc, inline_eigen_bin_lime_colvec_read_obj.h: Indented so I can even read the thing... 2009-07-17 10:52 bjoo * other_libs/qdp-lapack/: include/fortran_lapack.h, include/qdp-lapack.h, include/qdp-lapack_fortran_lapack.h, lib/fortran_lapack.cc, lib/lapack_stub.cc: Added Justins Lapack Desired Function 2009-07-17 10:52 edwards * lib/meas/inline/hadron/inline_create_colorvecs.cc: Cleaned up. Make sure to do correct number of hits. 2009-07-17 00:26 edwards * tests/chroma/hadron/colorvec_matelem/: colorvec_matelem.ini.xml, colorvec_matelem.out.xml: Added new displacements. 2009-07-14 22:55 jbulava * lib/Makefile.am: Induced changes. 2009-07-14 22:52 jbulava * lib/meas/: meas.h, inline/hadron/inline_stoch_laph_baryon_w.cc, inline/hadron/inline_stoch_laph_baryon_w.h, inline/hadron/inline_stoch_laph_quark_w.cc, inline/hadron/inline_stoch_laph_quark_w.h, laph/gauge_configuration.cc, laph/gauge_configuration.h, laph/laph.h: Added some utilities for the laph smearing routines. 2009-07-14 14:41 tag chroma3-35-0 2009-07-14 14:41 edwards * aclocal.m4, configure: Induced changes 2009-07-14 14:39 edwards * NEWS: Info on 3.35.0 2009-07-14 14:34 edwards * configure.ac: Changed to 3.35.0 2009-07-12 23:59 jbulava * lib/meas/inline/hadron/: inline_stoch_laph_baryon_w.cc, inline_stoch_laph_baryon_w.h: More work on this. Not even close to compiling yet. 2009-07-11 20:45 jbulava * lib/meas/sources/: dilute_zN_eigvec_source_const.cc, dilute_zN_eigvec_source_const.h: Bug fix. 2009-07-11 20:44 jbulava * lib/meas/inline/hadron/: inline_stoch_laph_baryon_w.h, inline_stoch_laph_quark_w.cc: STOCH_LAPH_QUARK is ready to go. More work on STOCH_LAPH_BARYON to come. 2009-07-08 22:13 jbulava * lib/: Makefile.am, meas/inline/hadron/inline_hadron_aggregate.cc, meas/inline/hadron/inline_laph_diluted_props_w.cc, meas/inline/hadron/inline_laph_diluted_props_w.h, meas/inline/hadron/inline_stoch_laph_baryon_w.cc, meas/inline/hadron/inline_stoch_laph_baryon_w.h, meas/inline/hadron/inline_stoch_laph_quark_w.cc, meas/inline/hadron/inline_stoch_laph_quark_w.h, util/ferm/key_laph_dil_prop.cc, util/ferm/key_laph_dil_prop.h: Changed the name of the diluted prop routine (per Colin's request). Also added a VERY rough start to a routine for make baryon source and sink functions from the diluted propagators. 2009-07-08 17:44 jbulava * lib/meas/inline/hadron/: inline_laph_diluted_props_w.cc, inline_laplace_eigs.cc: bug fix. 2009-07-08 17:06 jbulava * lib/meas/inline/hadron/inline_laplace_eigs.cc: Some more revisions. 2009-07-08 14:52 bjoo * configure, lib/Makefile.am: Induced changes 2009-07-08 14:50 bjoo * NEWS, configure.ac, tests/regres.pl: Bumped version to 3-34-1 2009-07-08 14:46 bjoo * lib/actions/ferm/invert/syssolver_linop_bicgstab.h, lib/actions/ferm/invert/syssolver_linop_ibicgstab.h, lib/actions/ferm/invert/syssolver_mdagm_ibicgstab.h, tests/regres.pl: Minor tweaks to the info echoed by solvers. Made BiCGStab and IBiCGStab output timings. Added regressions 2009-07-08 14:45 bjoo * tests/t_leapfrog/: regres.pl, t_leapfrog.prec_clover_stout-cg-lf-clover.ini.xml, t_leapfrog.prec_clover_stout-cg-lf-clover.log.xml, t_leapfrog.prec_clover_stout-ibicgstab.ini.xml, t_leapfrog.prec_clover_stout-ibicgstab.log.xml, t_leapfrog.prec_clover_stout-rel-bicgstab-multiprec.ini.xml, t_leapfrog.prec_clover_stout-rel-bicgstab-multiprec.log.xml, t_leapfrog.prec_clover_stout-rel-cg-multiprec.ini.xml, t_leapfrog.prec_clover_stout-rel-cg-multiprec.log.xml, t_leapfrog.prec_clover_stout-rel-ibicgstab-multiprec.ini.xml, t_leapfrog.prec_clover_stout-rel-ibicgstab-multiprec.log.xml, t_leapfrog.prec_clover_stout-richardson-multiprec.ini.xml, t_leapfrog.prec_clover_stout-richardson-multiprec.log.xml: Added Regressions for IBICGStab and Reliable IBICGSTAB. Reduced volumes for some other leapfrog tests to speed up how much wallclock time they use 2009-07-07 17:00 bjoo * lib/actions/ferm/invert/bicgstab_kernels_scalarsite.h, lib/actions/ferm/invert/ord_cxmayf_kernel_sse.h, lib/actions/ferm/invert/ord_xmay_normx_cdotzx_kernel_sse.h, lib/actions/ferm/invert/ord_yxpaymabz_kernel_sse.h, tests/chroma/hadron/propagator/prec_clover-stout3d-bicrstab.ini.xml, tests/chroma/hadron/propagator/prec_clover-stout3d-bicrstab.out.xml, tests/chroma/hadron/propagator/prec_clover-stout3d-ibicgstab.ini.xml, tests/chroma/hadron/propagator/prec_clover-stout3d-ibicgstab.out.xml, tests/chroma/hadron/propagator/prec_clover-stout3d-rel-ibicgstab.ini.xml, tests/chroma/hadron/propagator/prec_clover-stout3d-rel-ibicgstab.out.xml, tests/chroma/hadron/propagator/regres.pl: OK. Minor bugfixes. set stream_ps back to store_ps. Fixed multithreading issues and added regression tests for new linop solvers 2009-07-07 15:13 bjoo * lib/actions/ferm/invert/: bicgstab_kernels_scalarsite.cc, bicgstab_kernels_scalarsite.h, ord_ib_stupdates_kernel_generic.h, ord_ib_stupdates_kernel_sse.h, reliable_ibicgstab.cc: Made reliable_ibicgstab more stable by reinitializing sigma as well. Debugged the kernels so that they can now run in multihreaded mode too 2009-07-06 15:02 bjoo * lib/Makefile.am: Added Reliable IBiCGSTab 2009-07-06 15:02 bjoo * lib/actions/ferm/invert/: reliable_bicgstab.cc, reliable_ibicgstab.cc, reliable_ibicgstab.h, syssolver_linop_aggregate.cc, syssolver_linop_rel_bicgstab_clover.h, syssolver_linop_rel_ibicgstab_clover.cc, syssolver_linop_rel_ibicgstab_clover.h, syssolver_mdagm_aggregate.cc, syssolver_mdagm_rel_bicgstab_clover.h, syssolver_mdagm_rel_ibicgstab_clover.cc, syssolver_mdagm_rel_ibicgstab_clover.h: First attempt at reliable IBCGStab. Seems to get the right answer with threads=1. Need to debug kernels for QMT_NUM_THREADS more than 1 2009-07-03 12:51 jbulava * lib/meas/inline/hadron/inline_laplace_eigs.cc: More checks.... 2009-07-02 18:11 bjoo * lib/: Makefile.am, actions/ferm/invert/invbicrstab.cc, actions/ferm/invert/invbicrstab.h, actions/ferm/invert/syssolver_linop_aggregate.cc, actions/ferm/invert/syssolver_linop_bicrstab.cc, actions/ferm/invert/syssolver_linop_bicrstab.h: Added BiCRStab. Not really a win it seems 2009-07-02 14:24 bjoo * aclocal.m4, configure, lib/Makefile.am, lib/actions/ferm/invert/invbicgstab.cc, lib/actions/ferm/invert/invibicgstab.cc, lib/actions/ferm/invert/invibicgstab.h, lib/actions/ferm/invert/ord_cxmayf_kernel_sse.h, lib/actions/ferm/invert/ord_xmay_normx_cdotzx_kernel_sse.h, lib/actions/ferm/invert/ord_xmyz_normx_kernel_sse.h, lib/actions/ferm/invert/ord_xpaypbz_kernel_sse.h, lib/actions/ferm/invert/ord_yxpaymabz_kernel_sse.h, lib/actions/ferm/invert/syssolver_linop_aggregate.cc, lib/actions/ferm/invert/syssolver_linop_ibicgstab.cc, lib/actions/ferm/invert/syssolver_linop_ibicgstab.h, lib/actions/ferm/invert/syssolver_mdagm_aggregate.cc, lib/actions/ferm/invert/syssolver_mdagm_ibicgstab.cc, lib/actions/ferm/invert/syssolver_mdagm_ibicgstab.h, lib/meas/inline/hadron/inline_hadron_aggregate.cc: Moved IBiCGStab to its own solver (IBICGSTAB_INVERTER) and put back old BiCGStab so both are available. Checked kernels in double prec, looks good. Changed Inline Hadron Aggregate etc so that the InlineLaplaceEig stuff doesnt compile unless BUILD_LAPACK is defined with an --enable-lapack=lapack 2009-07-02 11:09 bjoo * lib/actions/ferm/invert/: bicgstab_kernels_scalarsite.h, ord_ib_stupdates_kernel_sse.h, ord_ib_zvupdates_kernel_sse.h: Seems to now work in scalar. On my laptop has multithread issues. Check on 7n & 9q for parallel operation 2009-07-02 07:10 edwards * other_libs/qdp-lapack/: include/fortran_lapack.h, include/qdp-lapack.h, lib/fortran_lapack.cc, lib/lapack_stub.cc: Added dqestr to list of routines. 2009-07-02 07:10 edwards * lib/meas/inline/hadron/inline_laplace_eigs.cc: Changed to using a qdp-lapack routine. This fixes the double build. 2009-07-02 06:52 edwards * other_libs/qdp-lapack/lib/lapack_stub.cc: Added stub routine for dsetqr 2009-07-01 16:36 bjoo * lib/actions/ferm/invert/: bicgstab_kernels_naive.h, invbicgstab.cc, ord_ib_stupdates_kernel_generic.h, ord_ib_stupdates_kernel_sse.h: OK! IBigstab actually works now. Found all bugs in the paper and PETSc. Now have one kernel - zvupdates in double to debug still. Then to recheck single again 2009-07-01 10:10 jbulava * lib/meas/inline/hadron/inline_laplace_eigs.cc: Added more tests. Seems to work. Still without implicit restart. 2009-06-30 17:10 jbulava * lib/meas/inline/hadron/inline_laplace_eigs.cc: Compiles and runs. Need to implement restarting now. 2009-06-30 16:24 jbulava * lib/meas/inline/hadron/inline_laplace_eigs.cc: Compiles, but gives runtime error. 2009-06-30 15:48 bjoo * lib/actions/ferm/invert/invbicgstab.cc: Restored BiCGStab 2009-06-30 11:57 bjoo * AUTHORS, COPYING, INSTALL, Makefile.am, NEWS, README, TODO, acinclude.m4, aclocal.m4, chroma-config.in, configure, configure.ac, lib/Makefile.am: Induced changes from IBiCGStab 2009-06-30 11:52 bjoo * lib/actions/ferm/invert/: bicgstab_kernels.h, bicgstab_kernels_naive.h, bicgstab_kernels_scalarsite.cc, bicgstab_kernels_scalarsite.h, invbicgstab.cc, ord_cxmayf_kernel_generic.h, ord_cxmayf_kernel_sse.h, ord_ib_rxupdate_kernel.h, ord_ib_rxupdate_kernel_generic.h, ord_ib_rxupdate_kernel_sse.h, ord_ib_stupdates_kernel_generic.h, ord_ib_stupdates_kernel_sse.h, ord_ib_stupdates_reduces.h, ord_ib_zvupdates_kernel.h, ord_ib_zvupdates_kernel_generic.h, ord_ib_zvupdates_kernel_sse.h, ord_norm2x_cdotxy_kernel_generic.h, ord_xmay_normx_cdotzx_kernel_generic.h, ord_xmay_normx_cdotzx_kernel_sse.h, ord_xmyz_normx_kernel_generic.h, ord_xmyz_normx_kernel_sse.h, ord_xpaypbz_kernel_generic.h, ord_xpaypbz_kernel_sse.h, ord_yxpaymabz_kernel_generic.h, ord_yxpaymabz_kernel_sse.h: Switched BiCGStab over to IBICGStab. Needs thorough testing, but seems OK in single and double on my laptop. Something weird is going on with multithreads in scalar Will check in parscalar elsewhere 2009-06-30 11:51 jbulava * lib/: Makefile.am, meas/inline/hadron/inline_hadron_aggregate.cc, meas/inline/hadron/inline_laph_diluted_props_w.cc, meas/inline/hadron/inline_laph_diluted_props_w.h: First crack at a routine to do all inversions needed in the diluted LapH scheme. Both sources and sinks are inserted into a single DB file. Still have to smear the sink before writing. Also, at the moment the source is stored as a full lattice fermion. This is extremely wasteful if only a single t0 is to be used, but won't matter if we end up doing all t0's. 2009-06-30 11:48 jbulava * lib/util/ferm/: key_laph_dil_prop.cc, key_laph_dil_prop.h: Support for keys of LapH-diluted props. 2009-06-29 10:35 jbulava * lib/meas/inline/hadron/inline_laplace_eigs.cc: Currently compiles, solves tridiagonal evp, but more work to be done. 2009-06-28 13:24 edwards * tests/chroma/hadron/colorvec_matelem/colorvec_matelem.out.xml: New regression output. 2009-06-28 13:23 edwards * tests/chroma/hadron/colorvec_matelem/colorvec_matelem.metric.xml: Fixed paths. 2009-06-25 09:03 bjoo * lib/update/molecdyn/predictor/mre_extrap_predictor.cc: Added timing info to chrono predictor 2009-06-24 16:01 jbulava * lib/Makefile.am: Induced changes 2009-06-24 15:59 jbulava * lib/meas/sources/: dilute_zN_eigvec_source_const.cc, dilute_zN_eigvec_source_const.h, sources.h: Diluted source in which noise is entered in the LapH subspace only. Seems to compile. 2009-06-24 15:55 jbulava * lib/meas/sources/: source_const_aggregate.cc, sources.h: [no log message] 2009-06-24 14:02 bjoo * other_libs/cpp_wilson_dslash/: include/cpp_clover_scalar.h, include/cpp_dslash_scalar_64bit_c.h, include/cpp_dslash_types.h, lib/cpp_clover_scalar_64bit.cc, lib/cpp_dslash_3d_scalar_64bit.cc, lib/cpp_dslash_scalar_64bit.cc, tests/testvol.h: Added some fixes asked for by Wei except the Shift Table thingie 2009-06-23 16:34 edwards * tests/chroma/hadron/colorvec_matelem/: colorvec_matelem.ini.xml, colorvec_matelem.out.xml: Updating input/output. 2009-06-23 15:18 jbulava * lib/meas/inline/hadron/inline_laplace_eigs.cc: Krylov vectors are orthogonal after big fix. 2009-06-23 15:01 jbulava * lib/meas/inline/hadron/inline_laplace_eigs.cc: Fixed bug. 2009-06-23 12:47 jbulava * lib/meas/inline/hadron/inline_hadron_aggregate.cc: Induced changes. 2009-06-23 11:22 jbulava * lib/meas/inline/hadron/inline_laplace_eigs.cc: Added a simple test of orthogonality 2009-06-23 11:12 jbulava * lib/: Makefile.am, meas/inline/hadron/inline_laplace_eigs.cc, meas/inline/hadron/inline_laplace_eigs.h: Added first vesrion of the lanczos routine. Seems to compile, no restart yet. 2009-06-17 14:11 jbulava * lib/meas/inline/hadron/inline_laplace_eigs.cc: More work on this. Not ready to compile yet. 2009-06-15 14:04 jbulava * lib/meas/inline/hadron/inline_laplace_eigs.cc: More work. 2009-06-15 11:20 jbulava * lib/meas/inline/hadron/: inline_laplace_eigs.cc, inline_laplace_eigs.h: First crack at lanczos algorithm to obtain laplacian eigenpairs 2009-06-12 15:53 bjoo * lib/Makefile.am: Added another buncha kernels 2009-06-12 15:52 bjoo * lib/actions/ferm/invert/: bicgstab_kernels_naive.h, bicgstab_kernels_scalarsite.h, ord_cxmayf_kernel.h, ord_cxmayf_kernel_generic.h, ord_cxmayf_kernel_sse.h, reliable_bicgstab.cc: Added another kernel 2009-06-11 11:20 bjoo * lib/actions/ferm/invert/syssolver_linop_cg.h: Solvers seem OK. Do not use ssed-clover for now. It seems to produce nonreproducibility in solvers 2009-06-10 16:05 bjoo * aclocal.m4, configure, configure.ac, lib/Makefile.am, lib/chroma_config_internal.h.in: Added SSE Kernels for BICGSTAB. 2009-06-10 15:58 bjoo * lib/actions/ferm/invert/: bicgstab_kernels.h, bicgstab_kernels_scalarsite.cc, bicgstab_kernels_scalarsite.h, bicgstab_kernels_scalarsite_generic.cc, bicgstab_kernels_scalarsite_generic.h, ord_norm2x_cdotxy_kernel_generic.h, ord_norm2x_cdotxy_kernel_sse.h, ord_xmay_normx_cdotzx_kernel_generic.h, ord_xmay_normx_cdotzx_kernel_sse.h, ord_xmyz_normx_kernel_generic.h, ord_xmyz_normx_kernel_sse.h, ord_xpaypbz_kernel_generic.h, ord_xpaypbz_kernel_sse.h, ord_yxpaymabz_kernel_generic.h, ord_yxpaymabz_kernel_sse.h, ord_norm2x_cdotxy_kernel.h, ord_xmay_normx_cdotzx_kernel.h, ord_xmyz_normx_kernel.h, ord_xpaypbz_kernel.h, ord_yxpaymabz_kernel.h: Commit before these disappear 2009-06-05 09:08 bjoo * lib/actions/ferm/invert/reliable_bicgstab.cc: Reorganized the Reliable BiCGStab so no mallocs in the main loop 2009-06-04 16:33 bjoo * lib/Makefile.am: Induced Changes 2009-06-04 16:32 bjoo * lib/actions/ferm/invert/syssolver_mdagm_bicgstab.h: Changed so that the first solve takes psi as the initial guess when using chronology 2009-06-04 16:30 bjoo * lib/update/molecdyn/monomial/eoprec_constdet_two_flavor_ratio_conv_conv_monomial_w.cc: Made ratio_conv_conv take a NULL predictor as its default. It sets an initial guess first 2009-06-04 16:29 bjoo * lib/update/molecdyn/predictor/: null_predictor.cc, null_predictor.h, predictor_aggregate.cc: Added Null Predictor 2009-06-03 15:20 bjoo * configure, configure.ac, lib/Makefile.am, lib/chroma_config_internal.h.in, lib/actions/ferm/invert/bicgstab_kernels.h, lib/actions/ferm/invert/bicgstab_kernels_naive.h, lib/actions/ferm/invert/bicgstab_kernels_scalarsite_generic.cc, lib/actions/ferm/invert/bicgstab_kernels_scalarsite_generic.h, lib/actions/ferm/invert/reliable_bicgstab.cc, lib/actions/ferm/invert/syssolver_mdagm_bicgstab.h, lib/actions/ferm/invert/syssolver_mdagm_rel_bicgstab_clover.h: Added prototype bicgstab-kernels, to Clover Rel BiCGstab only. When these work out they can propagate to normal BiCGStab too. 2009-06-02 11:56 bjoo * lib/actions/ferm/invert/invcg2.cc, lib/actions/ferm/invert/syssolver_mdagm.h, lib/actions/ferm/invert/syssolver_mdagm_OPTeigcg.h, lib/actions/ferm/invert/syssolver_mdagm_bicgstab.h, lib/actions/ferm/invert/syssolver_mdagm_cg.h, lib/actions/ferm/invert/syssolver_mdagm_cg_lf_clover.h, lib/actions/ferm/invert/syssolver_mdagm_cg_timing.h, lib/actions/ferm/invert/syssolver_mdagm_eigcg_qdp.h, lib/actions/ferm/invert/syssolver_mdagm_mr.h, lib/actions/ferm/invert/syssolver_mdagm_rel_bicgstab_clover.h, lib/actions/ferm/invert/syssolver_mdagm_rel_cg_clover.h, lib/actions/ferm/invert/syssolver_mdagm_richardson_multiprec_clover.h, lib/update/molecdyn/monomial/two_flavor_monomial_w.h, lib/update/molecdyn/monomial/two_flavor_ratio_conv_conv_monomial_w.h, lib/update/molecdyn/monomial/two_flavor_ratio_conv_rat_monomial_w.h, lib/update/molecdyn/predictor/mre_extrap_predictor.cc, tests/regres.pl: Changed chrono solver interface in 4D monomials. ChronoPredictors are now passed into the SysSolverMdagM objects through their new operator\(\). No changes to 5D SysSolverMdagMs or 5D Monomials. No Changes to Polyprec Monomials. Regressions appear to pass 2009-06-01 16:39 bjoo * lib/update/molecdyn/predictor/: chrono_predictor.h, last_solution_predictor.h, linear_extrap_predictor.h, mre_extrap_predictor.cc, mre_extrap_predictor.h: Updated 4D Chrono predictors to handle 2 step processes. Monomial and MdagM updates next 2009-06-01 15:46 bjoo * lib/update/molecdyn/predictor/: chrono_predictor.h, last_solution_predictor.h, linear_extrap_predictor.h, mre_extrap_predictor.cc, mre_extrap_predictor.h, zero_guess_predictor.h: Initial chronology changes to support two step chronology 2009-06-01 12:24 bjoo * lib/actions/ferm/invert/reliable_bicgstab.cc, lib/actions/ferm/invert/reliable_cg.cc, lib/update/molecdyn/monomial/force_monitors.cc, lib/update/molecdyn/monomial/force_monitors.h, mainprogs/main/hmc.cc, mainprogs/tests/t_leapfrog.cc: Reliable CG can now do chronology. Also Can turn off force monitors 2009-05-28 11:36 bjoo * lib/actions/ferm/invert/: syssolver_mdagm_bicgstab.h, syssolver_mdagm_cg_lf_clover.h, syssolver_mdagm_rel_bicgstab_clover.h: Slight changes in the reporting of the solvers 2009-05-22 15:50 bjoo * lib/actions/ferm/invert/: syssolver_linop_rel_bicgstab_clover.h, syssolver_linop_rel_cg_clover.h, syssolver_mdagm_rel_bicgstab_clover.h, syssolver_mdagm_rel_cg_clover.h: Oopsies 2009-05-22 11:25 bjoo * lib/actions/ferm/invert/reliable_cg.cc, lib/actions/ferm/invert/syssolver_mdagm_rel_cg_clover.h, tests/regres.pl, tests/t_leapfrog/regres.pl, tests/t_leapfrog/t_leapfrog.prec_clover_stout-rel-cg-multiprec.ini.xml, tests/t_leapfrog/t_leapfrog.prec_clover_stout-rel-cg-multiprec.log.xml: Added regressions for reliable CG in leapfrog and propagator 2009-05-22 10:29 bjoo * tests/chroma/hadron/propagator/: prec_clover-stout3d-rel-cg-clover-multiprec.ini.xml, prec_clover-stout3d-rel-cg-clover-multiprec.metric.xml, prec_clover-stout3d-rel-cg-clover-multiprec.out.xml, regres.pl: Test for Reliable CG 2009-05-22 10:22 bjoo * lib/Makefile.am: Added a reliably updated CG 2009-05-22 10:21 bjoo * lib/actions/ferm/invert/: reliable_cg.cc, reliable_cg.h, syssolver_linop_aggregate.cc, syssolver_linop_rel_cg_clover.cc, syssolver_linop_rel_cg_clover.h, syssolver_mdagm_aggregate.cc, syssolver_mdagm_rel_cg_clover.cc, syssolver_mdagm_rel_cg_clover.h, syssolver_rel_bicgstab_clover_params.h: Added CG for clover with reliable updating 2009-05-21 16:44 bjoo * lib/actions/ferm/invert/: reliable_bicgstab.cc, syssolver_linop_rel_bicgstab_clover.h: Fixed reliable bicgstab so that it barfs on nonconvergence 2009-05-21 15:32 bjoo * lib/actions/ferm/invert/: invbicgstab.cc, reliable_bicgstab.cc: Added flopcounting to BiCGStab-s 2009-05-21 14:48 jbulava * mainprogs/main/: baryon_ops_red_dil.cc, make_baryon_ops.cc: Fixed bug in baryon_ops_red_dil. Edited make_baryon_ops to reflect change to inline_stoch_group_baryon. 2009-05-20 23:58 edwards * aclocal.m4, configure: Induced changes 2009-05-20 22:39 jbulava * lib/util/ferm/subset_vectors.h: Fixed bug in getDecayExtent. I think I remember fixing this bug a while ago, I don't know why it's still here..... 2009-05-20 16:19 bjoo * lib/actions/ferm/invert/invcg2.cc: Trying to make sure invcg2 goes through cliches 2009-05-20 15:41 bjoo * other_libs/cpp_wilson_dslash/tests/dslashm_w.cc: Fixed something that stopped make check in cpp dslash 2009-05-20 15:28 bjoo * lib/actions/ferm/linop/: lwldslash_w_cppd.cc, lwldslash_w_cppd.h, lwldslash_w_cppf.cc, lwldslash_w_cppf.h: Found a CPP Dslash related funny here. Fixed 2009-05-20 15:15 bjoo * NEWS, aclocal.m4, configure, lib/Makefile.am: Hopefully this commits it all 2009-05-20 15:07 bjoo * tests/t_leapfrog/: regres.pl, t_leapfrog.prec_clover_stout-cg-lf-clover.ini.xml, t_leapfrog.prec_clover_stout-cg-lf-clover.log.xml, t_leapfrog.prec_clover_stout-rel-bicgstab-multiprec.ini.xml, t_leapfrog.prec_clover_stout-rel-bicgstab-multiprec.log.xml: Added tests for 2 new clover solvers 2009-05-20 14:22 bjoo * lib/actions/ferm/invert/: reliable_bicgstab.cc, syssolver_cg_clover_params.cc, syssolver_cg_clover_params.h, syssolver_mdagm_aggregate.cc, syssolver_mdagm_cg_lf_clover.cc, syssolver_mdagm_cg_lf_clover.h, syssolver_mdagm_rel_bicgstab_clover.h: Added Single Prec CG Solver and stuff 2009-05-20 11:27 bjoo * lib/Makefile.am: Makefile.am additions 2009-05-20 11:26 bjoo * lib/actions/ferm/invert/: syssolver_rel_bicgstab_clover_params.cc, syssolver_rel_bicgstab_clover_params.h: Some more 2009-05-20 11:25 bjoo * lib/actions/ferm/invert/: reliable_bicgstab.cc, reliable_bicgstab.h, syssolver_linop_rel_bicgstab_clover.h, syssolver_linop_aggregate.cc, syssolver_linop_rel_bicgstab_clover.cc, syssolver_mdagm_aggregate.cc, syssolver_mdagm_rel_bicgstab_clover.cc, syssolver_mdagm_rel_bicgstab_clover.h: Reliable BiCGStab 2009-05-20 11:24 bjoo * tests/chroma/hadron/propagator/regres.pl: regres.pl 2009-05-20 11:22 bjoo * tests/chroma/hadron/propagator/: prec_clover-stout3d-rel-bicgstab-clover-multiprec.ini.xml, prec_clover-stout3d-rel-bicgstab-clover-multiprec.metric.xml, prec_clover-stout3d-rel-bicgstab-clover-multiprec.out.xml: Test files for Reliable multiprec bicgstab 2009-05-19 23:04 jbulava * mainprogs/main/baryon_ops_red_dil.cc: Now it compiles. 2009-05-19 16:43 jbulava * lib/meas/inline/hadron/inline_stoch_group_baryon_w.cc: Now only calculate a single ordering at the sink, to save on storage 2009-05-19 16:42 jbulava * mainprogs/main/: Makefile.am, baryon_ops_red_dil.cc: Added a file to combine elements of a finer dilution scheme into a coarser one. 2009-05-19 16:07 edwards * lib/actions/ferm/linop/: eoprec_slic_linop_w.cc, eoprec_slic_linop_w.h: Some changes to SLIC. Derivatives are not correct. 2009-05-14 16:11 bjoo * lib/io/readmilc.h: There was a typo for the double prec guy in the .h that stopped double prec builds. 2009-05-13 09:12 edwards * lib/: io/readmilc.cc, io/readmilc.h, util/gauge/gauge_startup.cc, util/gauge/milc_gauge_init.cc: Changed readMILC to support a double prec and single mode. However, internally, only single-prec is actually read. 2009-05-12 23:32 edwards * lib/util/gauge/gauge_startup.cc: Changed readMILC to be only single-prec. 2009-05-12 23:26 edwards * lib/: io/readmilc.cc, io/readmilc.h, util/gauge/milc_gauge_init.cc: Changed MILC reader to a fixed single precision. 2009-05-12 00:09 kostas * lib/meas/inline/hadron/inline_hadspec_w.cc: added RAND wall source support 2009-05-08 07:09 mcneile * lib/meas/inline/hadron_s/: inline_spectrum_s.cc, util_baryon_s.cc: This adds the binary correlator code with binary output. 2009-05-08 06:17 mcneile * lib/meas/inline/hadron_s/: inline_spectrum_s.cc, inline_spectrum_s.h: I have added the calls to the binary writers. This code was added because of the poor IO performance on the QCDOC. 2009-05-08 06:15 mcneile * lib/meas/inline/hadron_s/: util_compute_8_pions_s.cc, util_compute_8_scalars_s.cc, util_compute_8_vectors_s.cc: I have added the bnary reader calls. We used this version of the code on the qcdoc. OK, perhaps we should now use the new database type classes. We are just trting to complete this long standing problem. 2009-05-08 05:56 mcneile * lib/meas/hadron/hadron_corr_s.h: Binary writer from the qcdoc version of the code. 2009-05-06 12:12 mcneile * tests/spectrum_s/: spectrum_s.out.xml, spectrum_s_HISQ.out.xml: I have added additional tags, so that this passes make xcheck. 2009-05-06 11:56 mcneile * tests/spectrum_s/: spectrum_s_HISQ.ini.xml, spectrum_s.ini.xml: I have added xml so that it runs now. 2009-05-06 10:12 mcneile * lib/meas/inline/hadron_s/inline_spectrum_s.cc: Fixed a minor typo. 2009-05-06 08:06 mcneile * lib/meas/inline/hadron_s/: inline_spectrum_s.cc, inline_spectrum_s.h: This is the code I used at Argone. It has hooks to do heavy-light mesons 2009-05-06 07:02 mcneile * lib/meas/inline/hadron_s/: util_compute_quark_prop_s.cc, util_compute_quark_prop_s.h: I have added codes to do non-degenerate inversions. One issue is that a copy of the noise sources also needs to be returned 2009-05-04 13:11 caubin * lib/actions/ferm/fermstates/: extfield_aggregate_w.cc, extfield_aggregate_w.h: Updated linear E-field to be implemented correctly as well as allow to "patch" boundaries as in the B-field. 2009-05-01 18:52 kostas * lib/meas/sources/rndzNwall_source_const.cc: .. comment change... 2009-05-01 18:41 kostas * aclocal.m4, configure, lib/Makefile.am, lib/meas/sources/rndzNwall_source_const.cc, lib/meas/sources/rndzNwall_source_const.h, lib/meas/sources/source_const_aggregate.cc: added in the compilation chain the random zN wall source 2009-05-01 13:34 kostas * lib/meas/sources/: rndzNwall_source_const.cc, rndzNwall_source_const.h: added random ZN wall source 2009-05-01 11:50 bjoo * chroma-config.in: Fixed chroma-config.sh.in for CPP Dslash 2009-05-01 11:40 bjoo * other_libs/cpp_wilson_dslash/: aclocal.m4, configure, include/Makefile.am: Fixed some Makefile.am typos that made it hard to link against the cpp_wilson_dslash builds 2009-05-01 11:03 bjoo * lib/actions/ferm/linop/dslash_w.h: Oops 2009-04-27 10:02 edwards * tests/chroma/hadron/colorvec_matelem/colorvec_matelem.metric.xml: Fixed path for baryon. 2009-04-27 06:16 mcneile * lib/meas/inline/hadron_s/: inline_spectrum_s.cc, inline_spectrum_s.h: I have included Chris Richard's code for computing the variational scalar code for staggered mesons. 2009-04-27 00:22 edwards * tests/chroma/hadron/colorvec_matelem/: colorvec_matelem.ini.xml, colorvec_matelem.out.xml: Changed to support num_vecs=10. 2009-04-26 23:15 edwards * tests/chroma/hadron/colorvec_matelem/: colorvec_matelem.ini.xml, colorvec_matelem.out.xml: Added 3-derivs 2009-04-26 17:02 mcneile * lib/meas/inline/hadron_s/: util_compute_meson_s.h, util_compute_meson_s.cc: check in Chris Richards. Code to do variational analysis for scalar channe (staggered fermions) 2009-04-26 16:36 mcneile * lib/Makefile.am: I have added the two new files written by Chris Richards. 2009-04-26 16:32 mcneile * lib/meas/hadron/: scalar_local_s.cc, scalar_local_s.h: Code check in for Chris Richards Scalar correlator code for scalar mesons. For staggered fermions. 2009-04-21 20:47 tag chroma3-34-0 2009-04-21 20:47 bjoo * NEWS: Updated news, moved configure.ac to v3.34.0. Actually Robert already did the latter 2009-04-21 20:25 bjoo * other_libs/qdp-lapack/lib/IncrEigpcg_orthogonalize.c: Hack to IncrEigpcg with an extra orthogonalization for a potential HMC application 2009-04-21 20:18 bjoo * aclocal.m4, configure: Added multiprec inverter tests 2009-04-21 20:08 bjoo * tests/regres.pl: Added new tests 2009-04-21 20:08 bjoo * tests/t_leapfrog/: regres.pl, t_leapfrog.prec_clover_stout-richardson-multiprec.ini.xml, t_leapfrog.prec_clover_stout-richardson-multiprec.log.xml: Added multiprec regression 2009-04-21 19:49 bjoo * tests/chroma/hadron/propagator/: prec_clover-stout3d-richardson-clover-multiprec.ini.xml, prec_clover-stout3d-richardson-clover-multiprec.metric.xml, prec_clover-stout3d-richardson-clover-multiprec.out.xml, regres.pl: Added multiprec regression 2009-04-21 18:32 bjoo * lib/actions/ferm/linop/lwldslash_w_pab.h: Added templating to the PABDslash 2009-04-20 21:21 eneil * lib/Makefile.am, lib/meas/inline/inline.h, lib/meas/inline/inline_aggregate.cc, lib/meas/inline/pbp/inline_pbp_aggregate.cc, lib/meas/inline/pbp/inline_pbp_aggregate.h, lib/meas/inline/pbp/inline_psibarpsi_w.cc, lib/meas/inline/pbp/inline_psibarpsi_w.h, lib/meas/inline/pbp/pbp.h, lib/meas/pbp/mespbp_w.cc, lib/meas/pbp/mespbp_w.h, lib/meas/pbp/pbp.h, tests/regres.pl, tests/chroma/pbp/pbp.ini.xml, tests/chroma/pbp/pbp.metric.xml, tests/chroma/pbp/pbp.out.xml, tests/chroma/pbp/regres.pl: Updated the Wilson psi-bar-psi measurement code, added an inline measurement and regression test. 2009-04-17 16:53 bjoo * AUTHORS, COPYING, INSTALL, Makefile.am, NEWS, README, TODO, acinclude.m4, aclocal.m4, chroma-config.in, configure, configure.ac, lib/Makefile.am, lib/chroma_config_internal.h.in, lib/actions/ferm/linop/lwldslash_w_cppd.cc, lib/actions/ferm/linop/lwldslash_w_cppf.cc, mainprogs/main/Makefile.am, mainprogs/tests/Makefile.am, other_libs/Makefile.am: Initial integration of CPP Dslash Done 2009-04-17 16:44 bjoo * lib/actions/ferm/linop/: dslash_w.h, lwldslash_w_cppd.cc, lwldslash_w_cppd.h, lwldslash_w_cppf.cc, lwldslash_w_cppf.h: Initial interface classes 2009-04-17 15:28 bjoo * other_libs/cpp_wilson_dslash/: NEWS, include/cpp_dslash_qdp_packer.h, include/cpp_dslash_scalar.h, include/shift_table_scalar.h, lib/cpp_dslash_scalar_32bit.cc, lib/cpp_dslash_scalar_64bit.cc, lib/shift_table_scalar.cc, tests/dslash_3d_w.cc, tests/dslash_3d_w.h, tests/dslashm_w.cc, tests/reunit.cc, tests/reunit.h, tests/testDslash3D.cc, tests/testDslashFull.cc, tests/testvol.h, tests/timeDslash.cc, tests/unittest.h: OK Ready to integrate hopefully 2009-04-17 14:23 bjoo * other_libs/cpp_wilson_dslash/: AUTHORS, COPYING, INSTALL, Makefile.am, NEWS, README, acinclude.m4, aclocal.m4, configure, configure.ac: Removed scalar code blocking. 2009-04-17 10:42 bjoo * other_libs/qdp-lapack/lib/IncrEigpcg.c: Reverting to the previous version of this - without the orthogonalization before the solve that Andreas added in for me as test code. Leaving in added code but ifdef-ed out 2009-04-17 09:07 bjoo * other_libs/qdp-lapack/include/: fortran_lapack.h, qdp-lapack.h: Added a using namespace QDP declaration to help the qdp_lapack fortran bindings to build 2009-04-16 22:43 bjoo * aclocal.m4, configure: Induced Changes 2009-04-16 22:22 bjoo * lib/update/molecdyn/predictor/: mre_initcg_extrap_predictor.cc, mre_initcg_extrap_predictor.h: Attempts at InitCG predictor 2009-04-16 22:10 bjoo * tests/t_leapfrog/t_leapfrog.prec_clover_stout-richardson-multiprec.ini.xml: Multi prec solver test input file 2009-04-16 22:08 bjoo * tests/chroma/hadron/propagator/prec_clover-stout3d-richardson-clover-multiprec.ini.xml: Test input for Richardson Multprec Solver 2009-04-16 22:04 bjoo * AUTHORS, COPYING, INSTALL, Makefile.am, NEWS, README, TODO, acinclude.m4, aclocal.m4, chroma-config.in, configure, configure.ac, lib/Makefile.am, lib/linearop.h, lib/typelist.h, lib/actions/ferm/fermacts/eoprec_wilson_coarse_fine_fermact_w.cc, lib/actions/ferm/fermacts/eoprec_wilson_fermact_w.cc, lib/actions/ferm/fermacts/tprec_wilson_fermact_w.cc, lib/actions/ferm/fermbcs/fermbc_factory_w.h, lib/actions/ferm/fermbcs/simple_fermbc.h, lib/actions/ferm/fermbcs/simple_fermbc_w.cc, lib/actions/ferm/invert/invbicgstab.cc, lib/actions/ferm/invert/invbicgstab.h, lib/actions/ferm/invert/syssolver_linop_aggregate.cc, lib/actions/ferm/invert/syssolver_linop_bicgstab.cc, lib/actions/ferm/invert/syssolver_linop_cg.cc, lib/actions/ferm/invert/syssolver_linop_cg_timing.cc, lib/actions/ferm/invert/syssolver_linop_eigcg.cc, lib/actions/ferm/invert/syssolver_linop_factory.h, lib/actions/ferm/invert/syssolver_linop_mr.cc, lib/actions/ferm/invert/syssolver_linop_richardson_multiprec_clover.cc, lib/actions/ferm/invert/syssolver_linop_richardson_multiprec_clover.h, lib/actions/ferm/invert/syssolver_mdagm_OPTeigcg.cc, lib/actions/ferm/invert/syssolver_mdagm_aggregate.cc, lib/actions/ferm/invert/syssolver_mdagm_bicgstab.cc, lib/actions/ferm/invert/syssolver_mdagm_cg.cc, lib/actions/ferm/invert/syssolver_mdagm_cg_timing.cc, lib/actions/ferm/invert/syssolver_mdagm_eigcg_qdp.cc, lib/actions/ferm/invert/syssolver_mdagm_factory.h, lib/actions/ferm/invert/syssolver_mdagm_mr.cc, lib/actions/ferm/invert/syssolver_mdagm_richardson_multiprec_clover.cc, lib/actions/ferm/invert/syssolver_mdagm_richardson_multiprec_clover.h, lib/actions/ferm/invert/syssolver_richardson_clover_params.cc, lib/actions/ferm/invert/syssolver_richardson_clover_params.h, lib/actions/ferm/linop/clover_term_bagel_clover.h, lib/actions/ferm/linop/clover_term_base_w.cc, lib/actions/ferm/linop/clover_term_base_w.h, lib/actions/ferm/linop/clover_term_qdp_w.cc, lib/actions/ferm/linop/clover_term_qdp_w.h, lib/actions/ferm/linop/clover_term_ssed.h, lib/actions/ferm/linop/clover_term_w.h, lib/actions/ferm/linop/dslash_w.h, lib/actions/ferm/linop/eoprec_clover_dumb_linop_w.cc, lib/actions/ferm/linop/eoprec_clover_dumb_linop_w.h, lib/actions/ferm/linop/eoprec_clover_linop_w.cc, lib/actions/ferm/linop/eoprec_clover_linop_w.h, lib/actions/ferm/linop/lwldslash_base_w.cc, lib/actions/ferm/linop/lwldslash_base_w.h, lib/actions/ferm/linop/lwldslash_qdpopt_w.cc, lib/actions/ferm/linop/lwldslash_qdpopt_w.h, lib/actions/ferm/linop/lwldslash_w.cc, lib/actions/ferm/linop/lwldslash_w.h, lib/actions/ferm/linop/lwldslash_w_sse.h, lib/actions/ferm/qprop/quarkprop4_w.cc, lib/actions/gauge/gaugebcs/gaugebc_factory.h, lib/actions/gauge/gaugebcs/periodic_gaugebc.cc, lib/actions/gauge/gaugebcs/periodic_gaugebc.h, lib/actions/gauge/gaugebcs/simple_gaugebc.cc, lib/actions/gauge/gaugebcs/simple_gaugebc.h, lib/actions/gauge/gaugestates/periodic_gaugestate.cc, lib/actions/gauge/gaugestates/periodic_gaugestate.h, lib/meas/glue/mesfield.cc, lib/meas/glue/mesfield.h, lib/update/molecdyn/integrator/abs_integrator.h, lib/update/molecdyn/integrator/lcm_integrator_leaps.cc, lib/update/molecdyn/predictor/predictor_aggregate.cc, mainprogs/tests/Makefile.am, mainprogs/tests/t_aniso_gaugeact.cc, mainprogs/tests/t_gauge_force.cc, other_libs/qdp-lapack/include/qdp-lapack.h, other_libs/qdp-lapack/lib/IncrEigpcg.c, other_libs/sse_wilson_dslash/include/sse_dslash_qdp_packer.h, other_libs/sse_wilson_dslash/include/sse_dslash_qdp_packer_3d.h, lib/actions/ferm/invert/inv_multiprec_richardson.cc, lib/actions/ferm/invert/inv_multiprec_richardson.h: Added Multiprec inverter stuff. Need qdp1_31_2 at least 2009-04-16 00:04 edwards * lib/meas/inline/hadron/inline_annih_prop_matelem_colorvec_w.cc: Changed the Z(N) source to only be time-slice based. 2009-04-13 17:04 edwards * aclocal.m4, configure: Induced changes 2009-04-13 14:54 bjoo * other_libs/cpp_wilson_dslash/tests/: dslashm_w.cc, testClover.cc, testDslash3D.cc, testDslashFull.cc, testvol.h, timeClover.cc, timeDslash.cc, timeDslash3D.cc, unittest.h: Cleaned up scalar branch. Works fine with QMT from inside QDP. MPI version next 2009-04-13 02:32 edwards * lib/meas/inline/hadron/inline_genprop_matelem_colorvec_w.cc: Added printing of program info in metadata of the db. 2009-04-12 18:06 edwards * lib/meas/inline/hadron/: inline_annih_prop_matelem_colorvec_w.cc, inline_annih_prop_matelem_colorvec_w.h, inline_baryon_matelem_colorvec_w.cc, inline_meson_matelem_colorvec_w.cc, inline_prop_matelem_colorvec_w.cc: Changed annih_prop to take an array of sources. Added propinfo to all db output. 2009-04-12 18:05 edwards * tests/chroma/hadron/colorvec_matelem/: colorvec_matelem.ini.xml, colorvec_matelem.metric.xml, colorvec_matelem.out.xml: Updated regression to use new annihilation prop routine. 2009-04-12 16:54 edwards * lib/: Makefile.am, meas/inline/hadron/inline_annih_prop_matelem_colorvec_w.cc, meas/inline/hadron/inline_annih_prop_matelem_colorvec_w.h, meas/inline/hadron/inline_hadron_aggregate.cc, meas/inline/hadron/inline_prop_matelem_colorvec_w.cc, util/ferm/key_prop_matelem.cc, util/ferm/key_prop_matelem.h: New annihilation prop routine. Split off the key/val elemental struct and read/write routines into its own file. 2009-04-11 23:44 kostas * aclocal.m4, configure, lib/Makefile.am, lib/meas/inline/hadron/inline_hadspec_w.cc, lib/meas/sinks/norm_sh_sink_smearing.cc, lib/meas/sinks/norm_sh_sink_smearing.h, lib/meas/sinks/sink_smearing_aggregate.cc: added new sink 2009-04-11 15:24 edwards * aclocal.m4, configure: Induced change 2009-04-11 15:22 edwards * tests/chroma/hadron/colorvec_matelem/: colorvec_matelem.ini.xml, colorvec_matelem.metric.xml: Fixed paths. 2009-04-11 00:33 edwards * lib/meas/sources/: zN_src.cc, zN_src.h: Added a zN_rng version for just a single scalar number. 2009-04-11 00:03 edwards * tests/chroma/hadron/colorvec_matelem/colorvec_matelem.metric.xml: Match new input. 2009-04-10 23:59 edwards * tests/chroma/hadron/colorvec_matelem/: colorvec_matelem.ini.xml, colorvec_matelem.out.xml: Switched to new create_colorvecs task. 2009-04-10 23:33 edwards * lib/meas/inline/hadron/inline_hadron_aggregate.cc: Added block_orthog_colorvec 2009-04-10 23:32 edwards * lib/: Makefile.am, meas/inline/hadron/inline_block_orthog_colorvec.cc, meas/inline/hadron/inline_block_orthog_colorvec.h, meas/inline/hadron/inline_create_colorvecs.cc, meas/inline/hadron/inline_create_colorvecs.h: Moved create_colorvecs over to block_orthog_colorvec. Have split off the laplacian iteration with orthogonalization step into the create_colorvecs routine. Will change the block_orthog to do just the blocking step. 2009-04-10 21:50 kostas * lib/: Makefile.am, meas/inline/hadron/inline_hadspec_w.cc, meas/sources/norm_sh_source_const.cc, meas/sources/norm_sh_source_const.h, meas/sources/source_const_aggregate.cc: added a new type of source 2009-04-09 19:00 caubin * aclocal.m4, configure, lib/Makefile.am, lib/meas/inline/hadron/inline_disco_eo_eigcg_w.cc: ... 2009-04-09 18:57 caubin * lib/meas/hadron/: Ql_3pt_w.cc, Ql_3pt_w.h, barQll_w.cc, barQll_w.h, mesQl_w.cc, mesQl_w.h: added modified files to fix build. 2009-04-08 14:34 caubin * lib/meas/inline/hadron/: inline_disco_eigcg_w.cc, inline_disco_eigcg_w.h, inline_disco_eo_eigcg_w.cc, inline_disco_eo_eigcg_w.h, inline_disco_eoprec_w.cc, inline_disco_eoprec_w.h, inline_hadron_aggregate.cc, inline_heavy_light_cont_w.cc: Modified disco files: Now there are four types: inline_disco_w: Just the noise vectors, no deflation inline_disco_eigcg_w: Noise vectors + deflation These two do not work, and not sure why: inline_disco_eoprec_w: Noise vectors, no deflation, even/odd prec. inline_disco_eo_eigcg_w: Noise + deflation, even/odd prec. 2009-04-06 13:33 bjoo * lib/update/molecdyn/integrator/lcm_integrator_leaps.cc: Commented out Total Forces 2009-04-02 15:58 bjoo * lib/update/molecdyn/integrator/lcm_integrator_leaps.cc: Now monitors total force from sum of monomials too... 2009-04-02 15:56 bjoo * lib/actions/ferm/invert/syssolver_mdagm_bicgstab.h: Added proper residue printout and timing 2009-03-25 20:07 edwards * lib/actions/ferm/qprop/eoprec_fermact_qprop.cc: Changed a comment to placate picky collaborators. 2009-03-24 16:18 caubin * lib/meas/inline/hadron/inline_disco_eigcg_w.cc: Code still wrong, and inefficient...going around in circles here. 2009-03-23 12:44 edwards * lib/meas/inline/hadron/: inline_baryon_matelem_colorvec_w.cc, inline_meson_matelem_colorvec_w.cc: Rearranged what groups are printed where in the metadata. Purely cosmetic - no functional change. 2009-03-19 17:49 mcneile * docs/large_nc.txt: Some basic documentation about compiling chroma for large Nc. 2009-03-19 17:38 mcneile * lib/meas/hadron/walldeltapff_w.cc: Update so that chroma work with Nc > 3 2009-03-19 13:17 mcneile * lib/meas/hadron/: barcomp_w.cc, barhqlq_w.cc, baryon_w.cc, group_baryon_operator_w.cc, qqq_w.cc, simple_baryon_operator_w.cc, simple_baryon_seqsrc_w.cc, simple_hadron_operator_w.cc, walldeltaff_w.cc, wallnuclff_w.cc: Added guard code so that chroma compiles with Nc <> 3 2009-03-19 13:12 mcneile * lib/meas/inline/hadron/: inline_baryon_block_matelem_w.cc, inline_baryon_matelem_colorvec_w.cc, inline_meson_block_matelem_w.cc, inline_meson_matelem_colorvec_w.cc, inline_stoch_hadron_w.cc: I have added hooks so that the code works for Nc <> 3 2009-03-19 13:10 mcneile * lib/meas/inline/io/: inline_usqcd_read_ddpairs_prop.cc, inline_usqcd_write_ddpairs_prop.cc: Removed code that gave problems with Nc <> 3 2009-03-19 13:06 mcneile * lib/actions/ferm/: qprop/central_tprec_fermact_qprop_w.cc, linop/unprec_w12_linop_w.cc: Removed code for Nc <> 3 2009-03-19 09:08 mcneile * lib/actions/ferm/qprop/hisq_qprop.h: This is my first pass at adding the level3 code to the HISQ action. 2009-03-18 15:44 caubin * lib/meas/inline/hadron/inline_disco_eigcg_w.cc: fixed dilution error...deflation part still isn't checked. 2009-03-18 12:03 mcneile * mainprogs/tests/Makefile.am: I have added the wrapper for the staggered baryons 2009-03-18 12:00 mcneile * mainprogs/tests/t_stagg_baryon.cc: This is a wrapper program for the calculation of charmed baryon. 2009-03-18 09:40 mcneile * lib/Makefile.am: I have added the experimental spin=3/2 staggered baryon operators. 2009-03-18 09:37 mcneile * lib/meas/hadron/baryon_s.h: Protoptypes for j=3/2 baryon correlators. 2009-03-18 09:34 mcneile * lib/meas/hadron/baryon_spin3by2_s.cc: This is experimental code to compute some j=3/2 baryon correlators in the staggered formalism. 2009-03-12 14:41 caubin * lib/meas/inline/hadron/: inline_disco_eigcg_w.cc, inline_disco_eigcg_w.h: fixed some bugs...code still not finished. 2009-03-10 17:55 kostas * lib/util/ferm/composite_set.h: fixed a bug... needs more work though... 2009-03-10 15:14 kostas * lib/util/ferm/composite_set.h: composite set function 2009-03-09 14:23 edwards * lib/meas/hadron/dilution_quark_source_const_w.cc: Turned off sanity check that dilutions are complete on a time-slice. 2009-03-09 11:25 caubin * lib/meas/inline/hadron/: inline_disco_eigcg_w.cc, inline_disco_w.cc: got rid of nan problem in disco_eigcg 2009-03-06 14:30 caubin * lib/meas/inline/hadron/: inline_disco_eigcg_w.cc, inline_disco_w.cc: fixed minor bugs 2009-03-04 23:07 edwards * tests/chroma/hadron/colorvec_matelem/: block.out.xml, colorvec_matelem.ini.xml, colorvec_matelem.out.xml: Changed to using "sdb" instead of "db". New block input and output. 2009-03-04 23:04 edwards * other_libs/sse_wilson_dslash/: aclocal.m4, configure: Induced changes 2009-03-04 23:02 edwards * README: Changed dependencies. 2009-03-04 23:02 edwards * configure: Induced changes. 2009-03-04 23:01 edwards * lib/: meas/inline/hadron/inline_baryon_block_matelem_w.cc, meas/inline/hadron/inline_baryon_matelem_colorvec_w.cc, meas/inline/hadron/inline_block_genprop_matelem_w.cc, meas/inline/hadron/inline_block_prop_matelem_w.cc, meas/inline/hadron/inline_disco_eigcg_w.cc, meas/inline/hadron/inline_disco_w.cc, meas/inline/hadron/inline_genprop_matelem_colorvec_w.cc, meas/inline/hadron/inline_grid_prop_matelem_w.cc, meas/inline/hadron/inline_meson_block_matelem_w.cc, meas/inline/hadron/inline_meson_grid_matelem_w.cc, meas/inline/hadron/inline_meson_matelem_colorvec_w.cc, meas/inline/hadron/inline_prop_matelem_colorvec_w.cc, meas/inline/hadron/inline_stoch_hadron_w.cc, util/ferm/key_val_db.h: Switched away from using ffdb-lite DB storage with Berkeley DB. Now, have support for filedb - self contained DB implementation. No more Berkeley DB. The file format is completely different. No more 3 files. 2009-03-04 22:57 edwards * aclocal.m4: Induced changes 2009-03-04 22:56 edwards * configure.ac: Changed to 3.34.0 2009-03-04 22:20 tag chroma3-33-0 2009-03-04 22:20 edwards * NEWS: Info on 3.33.0 2009-03-04 22:15 edwards * aclocal.m4, configure: Induced changes 2009-03-04 22:15 edwards * README: Changed dependencies. 2009-03-04 22:14 edwards * configure.ac: Changed to 3.33.0 2009-03-04 12:31 caubin * lib/meas/inline/hadron/: inline_disco_eigcg_w.cc, inline_disco_w.cc: fixed overwriting database bug. 2009-03-01 10:37 edwards * tests/chroma/hadron/colorvec_matelem/block.ini.xml: New input. 2009-02-27 11:44 caubin * lib/meas/inline/hadron/inline_disco_eigcg_w.cc: got rid of one output line 2009-02-27 10:43 bjoo * AUTHORS, COPYING, INSTALL, Makefile.am, NEWS, README, TODO, acinclude.m4, aclocal.m4, chroma-config.in, configure, configure.ac: Added --enable-craypat option 2009-02-27 10:22 bjoo * lib/actions/ferm/linop/lwldslash_w_sse.cc: lwldslash_w_sse.cc -- this is now initialized only once -- again 2009-02-23 14:52 edwards * lib/meas/inline/hadron/: inline_baryon_block_matelem_w.cc, inline_baryon_block_matelem_w.h, inline_block_prop_matelem_w.cc, inline_block_prop_matelem_w.h, inline_block_prop_w.cc, inline_block_prop_w.h, inline_create_colorvecs.cc, inline_meson_block_matelem_w.cc, inline_meson_block_matelem_w.h: Moved around some indices. The form of the dbs will be different than before. The prop code now has the blocks as a key. Changed how the metadata is written to the DB so I can automatically detect their type. 2009-02-23 14:50 edwards * lib/meas/inline/hadron/inline_block_colorvecs.cc: Just some indentation so I can read the thing. 2009-02-23 14:50 edwards * lib/util/ferm/: block_couplings.cc, block_couplings.h: Trivial reshuffling. 2009-02-23 14:49 edwards * configure: Induced changes 2009-02-23 14:46 edwards * aclocal.m4: Induced changes 2009-02-23 14:44 edwards * lib/: meas/inline/hadron/inline_hadron_aggregate.cc, Makefile.am: Added inline_block_genprop_matelem. 2009-02-23 14:44 edwards * lib/meas/inline/hadron/: inline_block_genprop_matelem_w.cc, inline_block_genprop_matelem_w.h: Blocking version of genprop routine. 2009-02-23 14:35 kostas * other_libs/qdp-lapack/lib/lapack_stub.cc: fixed bug 2009-02-23 12:39 kostas * lib/meas/inline/hadron/: inline_block_colorvecs.cc, inline_block_colorvecs.h: fixed a bug 2009-02-23 12:36 kostas * lib/meas/inline/hadron/inline_block_colorvecs.cc: added code for writing out the smearing matrix... this is still not working 2009-02-23 12:03 kostas * aclocal.m4, configure, lib/Makefile.am, lib/meas/inline/hadron/inline_block_colorvecs.cc, lib/meas/inline/hadron/inline_block_colorvecs.h, lib/meas/inline/hadron/inline_create_colorvecs.cc, lib/meas/inline/hadron/inline_hadron_aggregate.cc: added blocking of color vectors 2009-02-21 00:05 edwards * lib/update/molecdyn/monomial/read_rat_approx.cc: Changed a std::cout to a QDPIO::cout to avoid 1000's of empty lines. 2009-02-20 15:29 caubin * lib/meas/inline/hadron/inline_disco_eigcg_w.cc: Added all terms required for Tr[gamma D^-1] for an eo-prec Dirac operator. 2009-02-20 10:17 edwards * lib/Makefile.am: Added jacobi_smear and jacobi_quark_smearing 2009-02-20 10:10 edwards * lib/meas/smear/: jacobi_quark_smearing.cc, jacobi_quark_smearing.h, jacobi_smear.cc, jacobi_smear.h, link_smearing_aggregate.cc, quark_displacement_aggregate.cc, quark_smearing_aggregate.cc: Added jacobi quark smearing courtesy of Dirk Pleiter. Removed some dos-isms from other files. 2009-02-20 10:02 caubin * lib/meas/hadron/Ql_3pt_w.cc: Made more general to output 11,12,21,22 spin-color trace combinations. 2009-02-17 18:45 bjoo * other_libs/sse_wilson_dslash/: aclocal.m4, configure, configure.ac, include/mvv_recons_64bit.h, include/sse_config_internal.h.in, include/types64.h, lib/decomp_64bit_parscalar.c, lib/decomp_hvv_64bit_parscalar.c, lib/mvv_recons_64bit_parscalar.c, lib/recons_64bit_parscalar.c, tests/testDslash3D.cc, tests/testDslashFull.cc, tests/testvol.h, tests/unittest.h: Added --enable-sloppy option to sse_wilson_dslash. FLOP rate increased a little on parscalar single, but not significantly because were still using DP arithmetics. Only the halfspinors are 32 bit so improved memory bandwidth and smaller messages. Lets see how it does on the Cray 2009-02-17 11:45 edwards * lib/meas/inline/hadron/inline_genprop_matelem_colorvec_w.cc: Reweight the momentum phase in case there was momentum averaging. 2009-02-17 11:33 edwards * lib/util/ft/: sftmom.cc, sftmom.h: Added a function that will return the multiplicity of a particular mom id. This is number of equiv. canonical mom. Only non-zero when mom averaging is enabled. Can use this to undo the averaging. 2009-02-16 11:39 jbulava * lib/meas/inline/io/inline_eigen_bin_lime_colvec_read_obj.cc: fixed bug 2009-02-16 11:22 edwards * tests/chroma/hadron/propagator/regres.pl: Removed the prec clover orbifold for now - keeps failing. 2009-02-13 17:41 jbulava * lib/: Makefile.am, meas/inline/io/inline_eigen_bin_lime_colvec_read_obj.cc, meas/inline/io/inline_eigen_bin_lime_colvec_read_obj.h, meas/inline/io/inline_io_aggregate.cc: Added reader to handle new eigenvector code 2009-02-13 17:39 kostas * lib/meas/inline/hadron/inline_create_colorvecs.cc: added printing of the smearing matrix 2009-02-13 15:17 bjoo * lib/actions/ferm/invert/: invcg2.cc, minvcg2.cc: Added PAT instrumentation 2009-02-12 01:34 kostas * lib/meas/inline/hadron/inline_create_colorvecs.cc: fixed bug 2009-02-11 01:17 edwards * lib/actions/ferm/linop/: eoprec_clover_orbifold_linop_w.cc, eoprec_clover_orbifold_linop_w.h: Fixed dagger of the operator. 2009-02-11 01:16 edwards * tests/chroma/hadron/propagator/prec_clover_orbifold.out.xml: New regressions. 2009-02-11 00:14 kostas * lib/meas/inline/hadron/: inline_create_colorvecs.cc, inline_create_colorvecs.h, inline_meson_block_matelem_w.cc: added block-orthogonalization 2009-02-10 09:32 edwards * aclocal.m4, configure: Induced changes 2009-02-09 23:22 edwards * tests/chroma/hadron/propagator/: prec_clover_orbifold.ini.xml, prec_clover_orbifold.metric.xml, prec_clover_orbifold.out.xml, regres.pl: Added clover_orbifold regression. 2009-02-09 23:22 edwards * lib/: Makefile.am, actions/ferm/fermacts/eoprec_clover_orbifold_fermact_w.cc, actions/ferm/fermacts/eoprec_clover_orbifold_fermact_w.h, actions/ferm/fermacts/fermacts_aggregate_w.cc, actions/ferm/linop/eoprec_clover_orbifold_linop_w.cc, actions/ferm/linop/eoprec_clover_orbifold_linop_w.h: Added clover fermact with orbifold term. Updated the corresponding linop to turn off the deriv terms since they are incorrect. 2009-02-09 17:16 edwards * lib/: Makefile.am, actions/ferm/linop/eoprec_clover_orbifold_linop_w.cc, actions/ferm/linop/eoprec_clover_orbifold_linop_w.h: Added eoprec_clover_orbifold. 2009-02-09 16:20 bjoo * tests/regres.pl: woops. 2009-02-09 16:19 bjoo * lib/util/gauge/gauge_startup.cc, mainprogs/main/hmc.cc, tests/regres.pl: Added reunitarization after gauge field reading in hmc.cc and gauge_startup.cc 2009-02-06 10:53 bjoo * lib/actions/ferm/linop/clover_term_ssed.cc: Removed an info message 2009-02-06 10:25 bjoo * lib/update/molecdyn/monomial/one_flavor_rat_monomial_w.h: Turned off MinvCGAccum in RHMC Energies and forces 2009-02-05 10:19 bjoo * lib/actions/ferm/linop/: clover_term_ssed.cc, clover_term_ssed.h: Tydied up threading in the SSED Clover. Regressions pass 2009-02-04 16:55 kostas * other_libs/qdp-lapack/: include/qdp-lapack.h, lib/fortran_lapack.cc: added the interface for chelesky with the matrix A given as mult1d 2009-02-04 16:26 kostas * other_libs/qdp-lapack/lib/lapack_stub.cc: added the stubs for cholesky 2009-02-04 16:23 kostas * other_libs/qdp-lapack/: include/fortran_lapack.h, include/qdp-lapack.h, include/qdp-lapack_fortran_lapack.h, lib/fortran_lapack.cc: added the cholesky interface to lapack 2009-02-04 16:16 bjoo * lib/: actions/ferm/linop/clover_term_qdp_w.cc, actions/ferm/linop/clover_term_qdp_w.h, actions/ferm/linop/clover_term_ssed.cc, util/gauge/stout_utils.cc: In process of tidying up the SSED Clover. Tidyed up QDPClover and Stout Utils 2009-02-04 10:20 bjoo * lib/actions/ferm/linop/: clover_term_qdp_w.cc, clover_term_qdp_w.h: Threaded the QDP Clover term 2009-02-03 16:35 edwards * lib/meas/inline/hadron/: inline_baryon_block_matelem_w.cc, inline_baryon_matelem_colorvec_w.cc, inline_block_prop_matelem_w.cc, inline_disco_eigcg_w.cc, inline_disco_w.cc, inline_genprop_matelem_colorvec_w.cc, inline_grid_prop_matelem_w.cc, inline_meson_block_matelem_w.cc, inline_meson_grid_matelem_w.cc, inline_meson_matelem_colorvec_w.cc, inline_prop_matelem_colorvec_w.cc, inline_stoch_hadron_w.cc: Changed to new DB constructor interface. Now pass in an "open_flags", cache and page sizes. 2009-02-03 16:30 bjoo * lib/: actions/ferm/linop/clover_term_ssed.cc, actions/ferm/linop/clover_term_ssed.h, init/chroma_init.cc: Added some threading for SSED Clover term 2009-02-01 00:34 kostas * lib/: meas/inline/hadron/inline_baryon_block_matelem_w.cc, meas/inline/hadron/inline_meson_block_matelem_w.cc, util/ferm/block_couplings.cc, util/ferm/block_couplings.h, util/ferm/block_subset.h: fixed bugs. Now block baryons work with all quark displacements 2009-01-31 15:55 edwards * tests/chroma/hadron/colorvec_matelem/: colorvec_matelem.ini.xml, colorvec_matelem.out.xml: Changed t_sources/t_sink back to 0 and 3. 2009-01-31 10:52 kostas * lib/meas/inline/hadron/inline_baryon_block_matelem_w.cc: fixed bug 2009-01-31 10:29 kostas * lib/: Makefile.am, meas/inline/hadron/inline_baryon_block_matelem_w.cc, meas/inline/hadron/inline_hadron_aggregate.cc, meas/inline/hadron/inline_meson_block_matelem_w.cc: added the block baryon and fixed a bug in block meson 2009-01-31 01:12 flemingg * lib/meas/sinks/sink_smearing_aggregate.cc: Added wall sink smearing into the aggregator. 2009-01-31 00:14 kostas * lib/meas/inline/hadron/: inline_baryon_block_matelem_w.cc, inline_baryon_block_matelem_w.h: added the block baryon code. Not working yet 2009-01-31 00:13 kostas * lib/util/ferm/block_couplings.cc, lib/util/ferm/block_couplings.h, other_libs/qdp-lapack/include/qdp-lapack_fortran_lapack.h: added block overlap code for three quarks (baryons) and started adding new Lapack routines needed for the disconnected 2009-01-30 23:50 edwards * tests/chroma/hadron/colorvec_matelem/: colorvec_matelem.ini.xml, colorvec_matelem.out.xml: New format of regression test. 2009-01-30 23:49 edwards * lib/meas/inline/hadron/: inline_genprop_matelem_colorvec_w.cc, inline_genprop_matelem_colorvec_w.h: Added new input flags. Have restrict_plateau to restrict the storage of the genprop to only the plateau region. Also, avg_equiv_mom which restricts the momentum to just averages and stores only the canonically ordered momentum. Its like hadspec. The genprop is averaged over equiv mom. Thus p^2=1 is distinct from p^2=2 each being stored as p=100 and 110, resp. 2009-01-30 16:19 caubin * lib/meas/inline/hadron/inline_disco_eigcg_w.cc: Added P_R chi routine and second piece needed for disconnected trace... 2009-01-30 16:07 kostas * lib/: Makefile.am, meas/inline/hadron/inline_hadron_aggregate.cc, meas/inline/hadron/inline_meson_block_matelem_w.cc, meas/inline/hadron/inline_meson_block_matelem_w.h, util/ferm/block_couplings.cc, util/ferm/block_couplings.h: added the block meson matelem code 2009-01-30 15:57 bjoo * lib/update/molecdyn/hmc/abs_hmc.h, lib/update/molecdyn/hmc/lcm_hmc.h, mainprogs/main/hmc.cc, tests/regres.pl, tests/hmc/hmc.prec_wilson.ini.xml, tests/hmc/hmc.prec_wilson.log.xml, tests/hmc/hmc.prec_wilson.out.xml: Added Reversibility check into the HMC 2009-01-30 15:52 kostas * lib/: Makefile.am, util/ferm/block_couplings.cc, util/ferm/block_couplings.h: added code to automatically compute nearest neighboring blocks given a displacement path. It can be used for both domain decomposition preconditioners and for blocked color vectors. 2009-01-30 00:33 kostas * lib/util/ferm/: key_block_prop.cc, key_block_prop.h: something missing 2009-01-30 00:31 kostas * lib/meas/inline/hadron/: inline_block_prop_matelem_w.cc, inline_block_prop_matelem_w.h: Here is the code 2009-01-30 00:28 kostas * lib/: Makefile.am, meas/inline/hadron/inline_hadron_aggregate.cc: added the block propmatelem 2009-01-29 22:43 kostas * lib/meas/inline/hadron/: inline_block_prop_w.cc, inline_block_prop_w.h: added the inline measurement for block colorvector props 2009-01-29 22:42 kostas * aclocal.m4, configure, lib/Makefile.am, lib/meas/inline/hadron/inline_disco_eigcg_w.h, lib/meas/inline/hadron/inline_hadron_aggregate.cc, lib/meas/inline/io/qio_read_obj_funcmap.cc, lib/meas/inline/io/qio_write_obj_funcmap.cc, lib/util/ferm/block_subset.h: added block color vector propagators 2009-01-29 11:57 caubin * lib/io/qprop_io.cc: Added backwards compatibility for propagators with t_source. 2009-01-29 11:05 caubin * lib/meas/inline/hadron/inline_heavy_light_cont_w.cc: ... 2009-01-27 18:33 edwards * README: Changed dependencies of chroma and qdp++. 2009-01-27 10:43 caubin * lib/meas/hadron/barQll_w.cc: fixed typo 2009-01-27 10:40 caubin * lib/meas/hadron/barQll_w.h: header file with backward static quark 2009-01-27 10:39 caubin * lib/meas/hadron/: Ql_3pt_w.cc, barQll_w.cc: Added backwards propagating static quark. 2009-01-26 17:56 edwards * lib/Makefile.am: Reorganized the eigcg codes. Moved the _linop_OPTeigcg to mdagm_OPTeigcg. 2009-01-26 17:47 edwards * lib/actions/ferm/invert/: syssolver_linop_OPTeigcg.cc, syssolver_linop_OPTeigcg.h, syssolver_linop_aggregate.cc, syssolver_linop_cg.cc, syssolver_linop_eigcg.cc, syssolver_linop_eigcg.h, syssolver_linop_eigcg_qdp.cc, syssolver_linop_eigcg_qdp.h, syssolver_mdagm_OPTeigcg.cc, syssolver_mdagm_OPTeigcg.h, syssolver_mdagm_aggregate.cc, syssolver_mdagm_cg.cc, syssolver_mdagm_eigcg.h, syssolver_mdagm_eigcg_qdp.cc, syssolver_mdagm_eigcg_qdp.h: Reorganized the eigcg codes. Moved the original _linop_ routines to _mdagm_ routines. The corresponding MdagM routines now just solve M^dag*M*psi = chi . The LinOp routines solve M*psi=chi . Now, the LinOp calls the MdagM variant, but multiplies the rhs by M^dag . 2009-01-26 17:27 tag chroma3-32-0 2009-01-26 17:27 edwards * NEWS: Info on 3.32.0 2009-01-26 17:21 edwards * aclocal.m4, configure: Induced changes 2009-01-26 17:21 edwards * configure.ac: Changed to 3.32.0 2009-01-23 16:07 caubin * lib/meas/inline/hadron/inline_heavy_light_cont_w.cc: commented out sanity check for now... 2009-01-22 11:41 caubin * lib/meas/inline/hadron/inline_heavy_light_cont_w.cc: Added sanity checks 2009-01-22 11:25 caubin * lib/meas/inline/hadron/inline_heavy_light_cont_w.cc: removed requirement of sources to be same...they need not be 2009-01-20 15:04 caubin * lib/meas/: hadron/Ql_3pt_w.cc, hadron/Ql_3pt_w.h, inline/hadron/inline_heavy_light_cont_w.cc: [no log message] 2009-01-20 11:16 caubin * lib/: Makefile.am, meas/inline/hadron/inline_hadron_aggregate.cc, meas/inline/hadron/inline_heavy_light_cont_w.cc, meas/inline/hadron/inline_heavy_light_cont_w.h, meas/inline/hadron/inline_static_light_cont_w.cc, meas/inline/hadron/inline_static_light_cont_w.h: renamed inline static_light_cont files to heavy_light_cont for future modifications... 2009-01-19 15:02 caubin * lib/meas/inline/hadron/: inline_static_light_cont_w.cc, inline_static_light_cont_w.h: updated what the code outputs 2009-01-16 12:30 caubin * lib/meas/: hadron/Ql_3pt_w.cc, hadron/Ql_3pt_w.h, inline/hadron/inline_static_light_cont_w.cc, inline/hadron/inline_static_light_cont_w.h: [no log message] 2009-01-16 12:25 caubin * lib/: Makefile.am, meas/hadron/hadron_w.h, meas/inline/hadron/inline_hadron_aggregate.cc: Added in code for static-light three-point functions... 2009-01-15 23:06 kostas * lib/util/ferm/block_subset.h: block functions that help definning block partitioning of the lattice 2008-12-21 16:45 edwards * lib/meas/hadron/: heavy_hadron_potentials_w.cc, heavy_hadron_potentials_w.h: Trying to cut down on the gazillion copy constructors. Made all the QllBlock and HeavyMesonBlock objects passed by const&. Added some more const's to the classes to make the compiler happy. Should be no functional change - just passing objects in by reference instead of value - the values are not changed via side effects. 2008-12-21 16:22 edwards * lib/meas/hadron/: barQll_w.cc, heavy_hadron_potentials_w.cc, heavy_hadron_potentials_w.h, heavy_hadrons_su3_w.cc, heavy_hadrons_su3_w.h, mesQlPOT_w.cc, mesQlPOT_w.h, mesQl_w.cc, mesQl_w.h, npr_vertex_w.cc, npr_vertex_w.h, qqbar_w.cc, qqbar_w.h, qqq_w.cc: Some code cleanups. Put in chroma namespace. Moved around the chromabase.h include. 2008-12-21 16:03 edwards * lib/util/ft/: sftmom.cc, sftmom.h: Moved include of chromabase into the .h file. 2008-12-20 01:36 kostas * lib/meas/inline/hadron/inline_create_colorvecs.cc: bug fix 2008-12-20 01:23 kostas * lib/meas/inline/hadron/inline_create_colorvecs.cc: works 2008-12-19 13:07 kostas * lib/meas/inline/hadron/inline_create_colorvecs.cc: fixed bugs 2008-12-19 12:43 kostas * lib/: Makefile.am, meas/inline/hadron/inline_create_colorvecs.cc, meas/inline/hadron/inline_create_colorvecs.h, meas/inline/hadron/inline_hadron_aggregate.cc: task for debugging 2008-12-15 14:24 kostas * lib/: actions/ferm/invert/syssolver_linop_OPTeigcg.h, meas/inline/hadron/inline_disco_eigcg_w.cc, meas/inline/hadron/inline_disco_eigcg_w.h: disco now reads eigcg eigenvectors 2008-12-15 11:45 kostas * lib/: actions/ferm/invert/containers.h, actions/ferm/invert/syssolver_linop_OPTeigcg.h, meas/inline/io/qio_read_obj_funcmap.cc, meas/inline/io/qio_write_obj_funcmap.cc: eigCG now writes and reads vectors from and to disk (this OPTeigCG) all works in single precision. One needs to extend to double but this also requires a double precision eigCG 2008-12-15 00:02 kostas * lib/actions/ferm/invert/: containers.h, syssolver_OPTeigcg_params.cc, syssolver_OPTeigcg_params.h, syssolver_eigcg_params.cc, syssolver_eigcg_params.h, syssolver_linop_OPTeigcg.h: started evec IO code (not working yet) 2008-12-13 08:27 kostas * lib/meas/inline/hadron/inline_disco_eigcg_w.cc: simplified logic 2008-12-12 23:42 kostas * lib/meas/inline/hadron/inline_disco_eigcg_w.cc: got the opperator from the action 2008-12-12 18:04 kostas * lib/meas/inline/hadron/: inline_disco_eigcg_w.cc, inline_disco_eigcg_w.h: added the action descriptor in the input 2008-12-12 12:11 kostas * lib/: Makefile.am, meas/inline/hadron/inline_disco_eigcg_w.cc, meas/inline/hadron/inline_disco_eigcg_w.h, meas/inline/hadron/inline_hadron_aggregate.cc: added disco eigcg in compilation tree 2008-12-12 11:41 kostas * lib/meas/inline/hadron/: inline_disco_eigcg_w.cc, inline_disco_eigcg_w.h: added disco with eig-vector 2008-12-11 23:13 kostas * lib/meas/inline/hadron/inline_grid_prop_w.cc: comment 2008-12-11 23:05 kostas * lib/meas/inline/hadron/inline_meson_grid_matelem_w.cc: small change 2008-12-11 22:54 kostas * lib/meas/inline/hadron/: inline_meson_grid_matelem_w.cc, inline_meson_grid_matelem_w.h: implemented symmetric smearing 2008-12-09 23:52 kostas * lib/actions/ferm/invert/containers.h: added a conversion function from OPTEigCG vectors to LatticeFermions 2008-12-06 09:48 kostas * lib/meas/inline/hadron/inline_disco_w.cc: changed so that everything is kept in memory in a map. the timing is the same as before where I wrote everything to disk as it goes allong 2008-12-06 01:51 kostas * lib/meas/inline/hadron/inline_disco_w.cc: [no log message] 2008-12-06 01:39 kostas * lib/meas/inline/hadron/inline_disco_w.cc: compiles and runs 2008-12-05 21:24 kostas * lib/: Makefile.am, meas/inline/hadron/inline_disco_w.cc, meas/inline/hadron/inline_hadron_aggregate.cc: compiles now 2008-12-05 20:14 kostas * lib/: Makefile.am, meas/inline/hadron/inline_disco_w.cc: modified make files`1 CV: ---------------------------------------------------------------------- 2008-12-05 20:00 kostas * lib/meas/inline/hadron/: inline_disco_w.cc, inline_disco_w.h: started code for disconnected diagrams 2008-12-03 16:16 kostas * lib/meas/hadron/dilution_quark_source_const_w.cc: fixed bug that made regressions fail 2008-12-01 09:25 kostas * lib/meas/sources/diluteGrid_source_const.cc: bug fix 2008-12-01 09:19 kostas * lib/meas/sources/diluteGrid_source_const.cc: bug fix 2008-11-30 22:18 kostas * lib/meas/inline/hadron/inline_meson_grid_matelem_w.cc: .. 2008-11-30 22:09 kostas * lib/: Makefile.am, meas/inline/hadron/inline_hadron_aggregate.cc, meas/inline/hadron/inline_meson_grid_matelem_w.cc, meas/inline/hadron/inline_meson_grid_matelem_w.h: added meson operators for grid sources 2008-11-29 07:39 kostas * lib/meas/inline/hadron/inline_grid_prop_matelem_w.cc: bug fix 2008-11-28 23:28 kostas * lib/meas/inline/hadron/inline_grid_prop_matelem_w.cc: ... 2008-11-28 13:18 kostas * lib/meas/inline/hadron/inline_grid_prop_matelem_w.cc: ... 2008-11-28 09:48 kostas * lib/meas/: inline/hadron/inline_grid_prop_matelem_w.cc, sources/diluteGrid_source_const.cc: changed source masking 2008-11-28 00:56 kostas * lib/meas/inline/hadron/inline_grid_prop_matelem_w.cc: ... 2008-11-28 00:13 kostas * lib/: Makefile.am, meas/inline/hadron/inline_grid_prop_matelem_w.cc, meas/inline/hadron/inline_grid_prop_matelem_w.h, meas/inline/hadron/inline_grid_prop_w.cc, meas/inline/hadron/inline_grid_prop_w.h, meas/inline/hadron/inline_hadron_aggregate.cc: added more 2008-11-27 00:49 kostas * lib/meas/inline/io/: qio_read_obj_funcmap.cc, qio_write_obj_funcmap.cc: added IO for eigCG vectors (this is tricky... for portability we should convert them to LatticeFermions for saving and when reading back in convert them to EigCG format. For the moment on can only use these vector when running on the same machine geometry as when produced) 2008-11-26 22:22 kostas * lib/: Makefile.am, meas/inline/hadron/inline_grid_prop_w.cc, meas/inline/hadron/inline_grid_prop_w.h, meas/inline/hadron/inline_hadron_aggregate.cc, meas/sources/diluteGrid_source_const.cc, meas/sources/diluteGrid_source_const.h, util/ferm/key_grid_prop.cc, util/ferm/key_grid_prop.h: added grid sources 2008-11-26 01:23 kostas * lib/: Makefile.am, meas/sources/diluteGrid_source_const.cc, meas/sources/diluteGrid_source_const.h, meas/sources/source_const_aggregate.cc, meas/sources/sources.h: added new source 2008-11-25 22:20 kostas * lib/meas/inline/hadron/inline_stoch_hadron_w.cc: improved IO and src caching 2008-11-25 17:31 kostas * lib/meas/hadron/: dilution_quark_source_const_w.cc, dilution_quark_source_const_w.h: added flag to switch off smearing if it is present. This should not affect the past functionality and should not break anything... (I hope!) 2008-11-25 11:15 edwards * tests/spectrum_s/: spectrum_s.out.xml, spectrum_s_HISQ.out.xml: Updated regressions. 2008-11-25 11:10 edwards * tests/chroma/hadron/colorvec_matelem/colorvec_matelem.metric.xml: Fixed metric. 2008-11-25 09:13 bjoo * other_libs/cpp_wilson_dslash/: include/cpp_dslash_qdp_packer.h, include/cpp_dslash_scalar.h, include/shift_table_scalar.h, lib/cpp_dslash_scalar_32bit.cc, lib/cpp_dslash_scalar_64bit.cc, lib/shift_table_scalar.cc, tests/testDslashFull.cc, tests/testvol.h, tests/timeDslash.cc: OK Committing this. The Clover Doesnt work in Scalar QMT Mode just now... 2008-11-24 23:50 edwards * tests/chroma/hadron/colorvec_matelem/: colorvec_matelem.ini.xml, colorvec_matelem.out.xml: Updated regressions. 2008-11-22 17:18 edwards * tests/chroma/hadron/colorvec_matelem/: colorvec_matelem.ini.xml, colorvec_matelem.out.xml: Fixed regression. 2008-11-22 17:17 edwards * lib/meas/inline/hadron/inline_static_prop_colorvec_w.cc: Fixed. Now passes gauge invariance. 2008-11-22 14:14 edwards * lib/: Makefile.am, meas/inline/hadron/inline_hadron_aggregate.cc, meas/inline/hadron/inline_static_prop_colorvec_w.cc, meas/inline/hadron/inline_static_prop_colorvec_w.h: Added inline_static_prop_colorvec - a static quark prop. 2008-11-22 14:13 edwards * lib/meas/smear/: displace.cc, displace.h: Added displace of LatticeColorMatrix. 2008-11-22 14:12 edwards * tests/chroma/hadron/colorvec_matelem/: colorvec_matelem.ini.xml, colorvec_matelem.metric.xml, colorvec_matelem.out.xml: Added new static prop tests. 2008-11-22 00:05 kostas * lib/meas/inline/hadron/inline_stoch_hadron_w.cc: fixed xml user data 2008-11-21 23:45 kostas * lib/meas/inline/hadron/inline_stoch_hadron_w.cc: hope it works now... 2008-11-21 22:17 kostas * lib/meas/inline/hadron/inline_stoch_hadron_w.cc: added sol-src mesons 2008-11-21 12:30 kostas * lib/meas/inline/hadron/inline_stoch_hadron_w.cc: now baryons are in (changed to hash tables which probably is not a good idea for baryons...) 2008-11-19 22:53 kostas * lib/meas/inline/hadron/inline_prop_3pt_w.cc: added gauge info in the header 2008-11-19 13:58 kostas * lib/meas/inline/hadron/: inline_stoch_hadron_w.cc, inline_stoch_hadron_w.h: ... 2008-11-18 22:33 kostas * lib/meas/inline/hadron/: inline_prop_3pt_w.h, inline_stoch_hadron_w.cc, inline_stoch_hadron_w.h: fixed compilation bug and added stuff 2008-11-18 17:28 kostas * lib/meas/inline/hadron/inline_prop_3pt_w.cc: now one can have as many quarks as you want. The operator specifies the insertion time and the code will insert the operator to all quarks that have this time as source. If none is found the code will die... 2008-11-17 13:22 kostas * lib/meas/inline/hadron/inline_prop_3pt_w.cc: fixed the problem... now I need to take care of the case where multiple timeslices exist in the dilution scheam. This will allow insertion of derivative operators with time links 2008-11-16 23:44 kostas * aclocal.m4, configure, lib/meas/inline/hadron/inline_prop_3pt_w.cc: hopefully fixed prop_3pt seg-fault 2008-11-16 12:02 bjoo * AUTHORS, COPYING, INSTALL, Makefile.am, NEWS, README, TODO, acinclude.m4, aclocal.m4, chroma-config.in, configure, configure.ac, lib/Makefile.am, lib/update/molecdyn/integrator/integrator_aggregate.cc, lib/update/molecdyn/integrator/lcm_sts_min_norm2_recursive_dtau.cc, lib/update/molecdyn/integrator/lcm_sts_min_norm2_recursive_dtau.h, lib/update/molecdyn/integrator/lcm_tst_min_norm2_recursive_dtau.cc, lib/update/molecdyn/integrator/lcm_tst_min_norm2_recursive_dtau.h, tests/t_leapfrog/regres.pl, tests/t_leapfrog/t_leapfrog.sts_min_norm_2_dtau.ini.xml, tests/t_leapfrog/t_leapfrog.sts_min_norm_2_dtau.log.xml, tests/t_leapfrog/t_leapfrog.tst_min_norm_2_dtau.ini.xml, tests/t_leapfrog/t_leapfrog.tst_min_norm_2_dtau.log.xml: Added STS and TST Min Norm 2 integrators that are based on delta_tau_max rather than on n_steps 2008-11-12 10:31 edwards * scripts/check_regres_runner.pl: Changed to support output_dir. 2008-11-11 19:25 edwards * tests/chroma/hadron/: stoch_group_baryon/make_baryon_ops.metric.xml, stoch_group_baryon/regres.pl, stoch_group_baryon/stoch_group_baryon.out.xml, stoch_group_meson/make_meson_ops.metric.xml, stoch_group_meson/regres.pl: Fixed regressions. 2008-11-11 18:13 edwards * scripts/run_chroma_xmldiff.pl: Added support for an output_dir. 2008-11-11 16:49 edwards * tests/chroma/hadron/sink_smear/sink-deriv.out.xml: Updated regression output. 2008-11-11 16:48 edwards * tests/chroma/hadron/make_source/source-deriv.out.xml: Updated regression tests. 2008-11-11 16:44 tag chroma3-31-1 2008-11-11 16:44 edwards * aclocal.m4, configure: Induced changes 2008-11-11 16:44 edwards * configure.ac: Changed to 3.31.1 2008-11-11 16:43 edwards * NEWS: Info on 3.31.1 2008-11-11 16:41 edwards * tests/chroma/hadron/: building_blocks/bb-deriv.out.xml, seqsource/seqsource-derivmeson.out.xml: Updated regression tests. 2008-11-11 16:31 edwards * aclocal.m4, configure: Induced changes 2008-11-11 16:27 edwards * lib/: meas/hadron/deriv_meson_seqsrc_w.cc, meas/hadron/deriv_meson_seqsrc_w.h, meas/smear/deriv_quark_displacement_w.cc, util/ferm/etensor.cc, util/ferm/etensor.h: Changed ETensor to the correct form (arxiv:0707.4162v2) involving sqrt(2)'s. The old form has +-1 (wrong). Overhauled the derivative mesons so that all the 3pt seqsrcs go through a few basic routines. The old and new codes pass the seqprop tests (meaning 3pt at source is equal to 2pt at sink) for every 3pt and every valid direction. Checked the building blocks (using strip_buildingblocks) for sink_mom=100, mom2_max=1, for all 3-pt sources and directions. The only difference between old and new is in the E irreps which is the expected result. Do not have another verification for the seqprops for the "E", other than to check the 2pt themselves. 2008-11-11 11:55 tag chroma3-31-0 2008-11-11 11:55 edwards * NEWS: Info on 3.31.0 2008-11-11 11:53 edwards * configure: Induced changes 2008-11-11 11:53 edwards * configure.ac: Oops, changed to 3.31.0 2008-11-11 11:50 edwards * aclocal.m4: Induced changes 2008-11-11 11:50 edwards * configure.ac: Changed to 3.32.0 2008-11-10 17:05 jbulava * lib/meas/smear/vector_quark_smearing.h: Fixed a bug in getDecayExtent() 2008-11-10 12:59 bjoo * lib/: actions/ferm/fermacts/clover_fermact_params_w.cc, actions/ferm/fermacts/clover_fermact_params_w.h, actions/ferm/linop/eoprec_clover_linop_w.cc, update/molecdyn/monomial/eoprec_constdet_two_flavor_ratio_conv_conv_monomial_w.cc: Added optional twisted M to the clover LinOp. Relaxed Fermion Action in the hasenbusch monomial to not need a constant determinant -- otherwise it can't do clover. Checked the conventions: Action <=> numerator in determinant <=> denominator in action. ActionPrec <=> denominator in determinant. Numerator in action 2008-11-09 19:15 kostas * tests/chroma/hadron/make_source/dilute-smear.ini.xml: sample input for diluted zN smeared source 2008-11-09 19:04 kostas * aclocal.m4, configure, lib/meas/sources/dilutezN_source_const.cc, lib/meas/sources/dilutezN_source_const.h: added smeared diluted source 2008-11-04 13:43 edwards * lib/: io/qprop_io.cc, meas/hadron/dilution_quark_source_const_w.cc, meas/hadron/stoch_cond_cont_w.cc, meas/inline/hadron/inline_hadspec_w.cc, meas/inline/hadron/inline_heavyhadspec_w.cc, meas/inline/hadron/inline_static_light_spec_w.cc, meas/inline/hadron/inline_stoch_baryon_w.cc, meas/inline/hadron/inline_stoch_meson_w.cc, meas/sinks/pt_sink_smearing.cc, meas/sinks/pt_sink_smearing.h, meas/sinks/sh_sink_smearing.cc, meas/sinks/sh_sink_smearing.h, meas/sinks/wall_sink_smearing.cc, meas/sinks/wall_sink_smearing.h, meas/smear/ape_link_smearing.cc, meas/smear/ape_link_smearing.h, meas/smear/gamma_displacement_w.cc, meas/smear/gamma_displacement_w.h, meas/smear/gaus_quark_smearing.cc, meas/smear/gaus_quark_smearing.h, meas/smear/hyp_link_smearing.cc, meas/smear/hyp_link_smearing.h, meas/smear/link_smearing_aggregate.cc, meas/smear/no_link_smearing.cc, meas/smear/no_link_smearing.h, meas/smear/no_quark_displacement.cc, meas/smear/no_quark_displacement.h, meas/smear/no_quark_smearing.cc, meas/smear/no_quark_smearing.h, meas/smear/quark_displacement_aggregate.cc, meas/smear/quark_smearing_aggregate.cc, meas/smear/simple_quark_displacement.cc, meas/smear/simple_quark_displacement.h, meas/smear/stout_link_smearing.cc, meas/smear/stout_link_smearing.h, meas/smear/vector_quark_smearing.cc, meas/smear/vector_quark_smearing.h, meas/sources/dilutezN_source_const.cc, meas/sources/dilutezN_source_const.h, meas/sources/mom_source_const.cc, meas/sources/mom_source_const.h, meas/sources/partwall_source_const.cc, meas/sources/partwall_source_const.h, meas/sources/pt_source_const.cc, meas/sources/pt_source_const.h, meas/sources/pt_source_smearing.cc, meas/sources/pt_source_smearing.h, meas/sources/rndz2wall_source_const.cc, meas/sources/rndz2wall_source_const.h, meas/sources/sf_pt_source_const.cc, meas/sources/sf_pt_source_const.h, meas/sources/sf_sh_source_const.cc, meas/sources/sf_sh_source_const.h, meas/sources/sf_wall_source_const.cc, meas/sources/sf_wall_source_const.h, meas/sources/sh_source_const.cc, meas/sources/sh_source_const.h, meas/sources/sh_source_smearing.cc, meas/sources/sh_source_smearing.h, meas/sources/wall_source_const.cc, meas/sources/wall_source_const.h: Removed use of "extern string name" from the measurement routines. Now use an explicit getName() function. 2008-11-04 13:42 edwards * lib/actions/ferm/: fermacts/eoprec_twm_fermact_array_w.cc, fermacts/eoprec_twm_fermact_array_w.h, fermacts/unprec_twm_fermact_array_w.cc, fermacts/unprec_twm_fermact_array_w.h, linop/eoprec_twm_linop_array_w.cc, linop/eoprec_twm_linop_array_w.h: First start at a twisted mass in array form. 2008-11-04 12:26 edwards * lib/meas/smear/: vector_quark_smearing.cc, vector_quark_smearing.h, vector_smear.cc, vector_smear.h: Did some indenting. 2008-11-01 21:19 edwards * scripts/test_runners/7n_mpirun_rsh_runner.sh.in: Changed regression nodes. 2008-10-30 10:57 edwards * lib/meas/inline/hadron/inline_unit_prop_colorvec_w.cc: Bug fix. 2008-10-30 10:47 edwards * lib/meas/inline/io/inline_eigen_lime_colvec_read_obj.cc: Put in checks on eigenvalues tag name. 2008-10-30 10:30 edwards * aclocal.m4, configure: Induced changes 2008-10-30 10:30 edwards * lib/Makefile.am: Added vector_smear and vector_quark_smearing. 2008-10-29 16:30 edwards * lib/meas/inline/hadron/inline_prop_3pt_w.cc: Bug fix. Removed a conj around the solution vector. 2008-10-29 15:42 jbulava * lib/meas/smear/: quark_smearing_aggregate.cc, vector_quark_smearing.cc, vector_quark_smearing.h, vector_smear.cc, vector_smear.h: support for a quark smearing scheme which consits of an outer product of subset lattice color vectors. This scheme also contains exponential smearing weights. 2008-10-28 22:12 edwards * lib/meas/inline/hadron/inline_hadron_aggregate.cc: Turned on UnitPropColorVec. 2008-10-28 17:36 edwards * lib/Makefile.am: Added inline_unit_prop_colorvec. 2008-10-28 17:34 edwards * lib/meas/inline/hadron/: inline_unit_prop_colorvec_w.cc, inline_unit_prop_colorvec_w.h: Propagator that is the identity matrix. 2008-10-24 11:26 edwards * tests/chroma/hadron/colorvec_matelem/colorvec_matelem.out.xml: Updated regression. 2008-10-24 10:13 jbulava * tests/chroma/hadron/stoch_group_baryon/: stoch_group_baryon.ini.pl, stoch_group_baryon.ini.xml: Forgot to check in the changes to the perl script and input file yesterday. 2008-10-23 15:32 jbulava * lib/meas/inline/hadron/inline_stoch_group_baryon_w.cc: I think I fixed the long standing bug. The input xml files will change however. 2008-10-19 01:19 kostas * lib/meas/inline/hadron/inline_prop_3pt_w.cc: working 2008-10-19 00:48 kostas * aclocal.m4, configure, lib/Makefile.am, lib/meas/inline/hadron/inline_hadron_aggregate.cc, lib/meas/inline/hadron/inline_prop_3pt_w.cc, lib/meas/inline/hadron/inline_prop_3pt_w.h: compiles now 2008-10-18 10:18 kostas * lib/meas/inline/hadron/inline_prop_3pt_w.cc: ... 2008-10-18 00:15 kostas * lib/meas/inline/hadron/: inline_prop_3pt_w.cc, inline_prop_3pt_w.h: ... 2008-10-15 16:09 edwards * lib/meas/inline/hadron/inline_genprop_matelem_colorvec_w.cc: Added missing "mass_label" xml input. 2008-10-15 14:56 kostas * lib/meas/inline/hadron/: inline_prop_3pt_w.cc, inline_prop_3pt_w.h: [no log message] 2008-10-15 12:08 edwards * lib/Makefile.am: Removed spurious backslash. 2008-10-08 15:42 bjoo * lib/: Makefile.am, central_tprec_fermact_w.h, central_tprec_linop.h, iluprec_s_cprec_t_wilstype_fermact_w.h: Some more mods 2008-10-08 15:40 bjoo * lib/actions/ferm/: fermacts/fermacts_aggregate_w.cc, fermacts/fermacts_w.h, fermacts/ilu2prec_s_cprec_t_clover_fermact_w.cc, fermacts/ilu2prec_s_cprec_t_clover_fermact_w.h, fermacts/ilu2prec_s_cprec_t_wilson_fermact_w.cc, fermacts/ilu2prec_s_cprec_t_wilson_fermact_w.h, invert/minvcg2_accum.cc, linop/ilu2prec_s_cprec_t_clover_linop_w.cc, linop/ilu2prec_s_cprec_t_clover_linop_w.h, linop/ilu2prec_s_cprec_t_wilson_linop_w.cc, linop/ilu2prec_s_cprec_t_wilson_linop_w.h, linop/ilu2prec_s_cprec_t_wilsonlike_linop_w.h, linop/iluprec_s_cprec_t_wilsonlike_linop_w.h, linop/linop_w.h, qprop/central_tprec_fermact_qprop_w.cc: Added Mike style preconditioning 2008-10-06 11:52 jbulava * lib/meas/inline/io/inline_eigen_lime_colvec_read_obj.cc: Fixed the output of laplace_eigs. Induced changes in the reader here. 2008-10-04 15:49 edwards * tests/chroma/hadron/colorvec_matelem/colorvec_matelem.out.xml: Updated regression output. 2008-10-04 15:38 edwards * tests/chroma/hadron/colorvec_matelem/: colorvec_matelem.ini.xml, colorvec_matelem.out.xml: Changed first task to a unit vectors. 2008-10-02 10:51 bjoo * other_libs/cpp_wilson_dslash/: configure, configure.ac, tests/testClover.cc, tests/timeClover.cc: stuff 2008-10-02 10:51 bjoo * other_libs/cpp_wilson_dslash/include/: Makefile.am, cpp_clover_site_apply_32bit.h, cpp_clover_site_apply_32bit_c.h, cpp_clover_site_apply_32bit_sse.h, cpp_clover_site_apply_64bit.h, cpp_clover_site_apply_64bit_c.h, cpp_clover_site_apply_64bit_sse.h, dslash_config_internal.h.in: Added SSE clover applies. Single prec one seems slow still, needs improving 2008-10-01 16:54 edwards * tests/chroma/hadron/colorvec_matelem/colorvec_matelem.out.xml: Fixed regression output. 2008-10-01 16:50 edwards * lib/meas/inline/hadron/inline_genprop_matelem_colorvec_w.cc: Added missing pop(xml). 2008-09-27 23:13 edwards * lib/meas/inline/hadron/inline_genprop_matelem_colorvec_w.cc: Fixed xml output. 2008-09-27 01:14 edwards * lib/meas/inline/hadron/: inline_genprop_matelem_colorvec_w.cc, inline_genprop_matelem_colorvec_w.h, inline_hadron_aggregate.cc: First running version of inline_genprop_matelem. Hooked it in. 2008-09-27 01:14 edwards * lib/meas/inline/hadron/inline_meson_matelem_colorvec_w.cc: Simplified the check of the displacements. 2008-09-27 01:13 edwards * lib/meas/smear/: displace.cc, displace.h: More displace array path variants. 2008-09-27 01:12 edwards * lib/Makefile.am: Added inline_genprop_matelem 2008-09-27 01:12 edwards * tests/chroma/hadron/colorvec_matelem/: colorvec_matelem.ini.xml, colorvec_matelem.out.xml: New regression output. 2008-09-26 17:15 edwards * lib/meas/inline/hadron/inline_prop_matelem_colorvec_w.cc: Changed cache size and page size of DB 2008-09-26 16:44 edwards * lib/meas/inline/hadron/inline_baryon_matelem_colorvec_w.cc: Changed DB cache size to 10MB 2008-09-26 16:43 edwards * lib/meas/inline/hadron/inline_meson_matelem_colorvec_w.cc: Changed DB cache size to 10MB. 2008-09-26 15:57 tag chroma3-30-4 2008-09-26 15:57 edwards * aclocal.m4, configure: Induced changes 2008-09-26 15:57 edwards * NEWS: Info on 3.31.4 2008-09-26 15:56 edwards * configure.ac: Changed to 3.31.4 2008-09-26 15:54 edwards * lib/meas/inline/hadron/: inline_baryon_matelem_colorvec_w.cc, inline_genprop_matelem_colorvec_w.cc, inline_genprop_matelem_colorvec_w.h, inline_meson_matelem_colorvec_w.cc, inline_prop_matelem_colorvec_w.cc: Changed data format for prop_matelem, meson_matelem, baryon_matelem. Now use a fixed size db. The colorvec indices are pushed down into the value. 2008-09-26 15:53 edwards * lib/meas/smear/: displace.cc, displace.h: Added a displace for paths of displacements. 2008-09-26 15:53 edwards * lib/meas/smear/: displacement.cc, displacement.h: Some rearrangements. No real change. 2008-09-26 15:48 tag chroma3-30-3 2008-09-26 15:48 edwards * aclocal.m4, configure: Induced changes 2008-09-26 15:48 edwards * NEWS: Info on 3.31.3 2008-09-26 15:47 edwards * configure.ac: Changed to 3.31.3 2008-09-26 15:47 edwards * configure.ac: Changed to 3.31.1 2008-09-26 11:56 bjoo * other_libs/cpp_wilson_dslash/: include/Makefile.am, include/cpp_clover.h, tests/testClover.cc, tests/timeClover.cc: Minor Tidyup. 2008-09-26 11:45 bjoo * other_libs/cpp_wilson_dslash/: include/Makefile.am, include/cpp_clover_odd_odd_parscalar_32bit.h, include/cpp_clover_odd_odd_parscalar_64bit.h, include/cpp_clover_parscalar.h, include/cpp_clover_site_apply_32bit.h, include/cpp_clover_site_apply_64bit.h, include/cpp_dslash_parscalar_decomp_64bit_c.h, include/cpp_dslash_parscalar_decomp_64bit_sse2.h, include/cpp_dslash_parscalar_mvv_recons_64bit_c.h, include/cpp_dslash_parscalar_mvv_recons_64bit_sse2.h, include/cpp_dslash_parscalar_recons_32bit_c.h, include/cpp_dslash_parscalar_recons_32bit_sse2.h, include/cpp_dslash_parscalar_recons_64bit_c.h, include/cpp_dslash_parscalar_recons_64bit_sse2.h, include/cpp_dslash_parscalar_utils_32bit.h, include/cpp_dslash_parscalar_utils_64bit.h, include/dispatch_parscalar.h, lib/Makefile.am, lib/cpp_clover_parscalar_32bit.cc, lib/cpp_clover_parscalar_64bit.cc, lib/cpp_clover_scalar_32bit.cc, lib/cpp_clover_scalar_64bit.cc, lib/cpp_dslash_parscalar_32bit.cc, lib/cpp_dslash_parscalar_64bit.cc, lib/cpp_dslash_parscalar_utils_32bit.cc, lib/cpp_dslash_parscalar_utils_64bit.cc, lib/dispatch_parscalar.cc, lib/dispatch_parscalar_openmp.cc, lib/dispatch_parscalar_qmt.cc, tests/testClover.cc, tests/timeClover.cc: First cut at the clover stuff 2008-09-25 21:19 jbulava * lib/util/ferm/subset_vectors.cc: Fixed xml io for eigenvalue weights. 2008-09-25 15:59 edwards * lib/meas/inline/io/inline_eigen_lime_colvec_read_obj.cc: Fixed pathname. 2008-09-24 16:01 bjoo * other_libs/cpp_wilson_dslash/: aclocal.m4, configure, include/Makefile.am, include/cpp_clover_scalar.h, include/cpp_clover_site_apply_32bit.h, include/cpp_clover_site_apply_64bit.h, include/cpp_clover_types.h, include/dispatch_scalar.h, lib/Makefile.am, lib/cpp_clover_scalar_32bit.cc, lib/cpp_clover_scalar_64bit.cc, lib/dispatch_scalar.cc, lib/dispatch_scalar_openmp.cc, lib/dispatch_scalar_qmt.cc, tests/Makefile.am, tests/t_clover.cc, tests/testClover.cc, tests/testClover.h, tests/testvol.h, tests/timeClover.cc, tests/timeClover.h, tests/time_clover.cc: Added scalar clover stuff 2008-09-22 23:10 edwards * tests/chroma/hadron/colorvec_matelem/: colorvec_matelem.ini.xml, colorvec_matelem.out.xml: Added a second time source to the tests. 2008-09-22 13:23 bjoo * other_libs/cpp_wilson_dslash/: aclocal.m4, configure, include/cache.h, lib/shift_table_scalar.cc, tests/testvol.h, tests/timeDslash.cc: OK 2008-09-16 11:13 bjoo * other_libs/cpp_wilson_dslash/include/shift_table_3d_scalar.h: Modified this for compilation with newerr gcc and Intel compilers 2008-09-16 11:11 bjoo * other_libs/cpp_wilson_dslash/include/: cpp_dslash_matvec32bit_c.h, cpp_dslash_matvec64bit_c.h, cpp_dslash_scalar_32bit_c.h, cpp_dslash_scalar_64bit_c.h: Rearranged matmults. Rearranged storage order on scalar targets 2008-09-15 15:44 bjoo * other_libs/cpp_wilson_dslash/include/cpp_dslash_matvec64bit_c.h: Fully Unrolled 64bit matmult 2008-09-15 14:01 bjoo * other_libs/cpp_wilson_dslash/include/: cpp_dslash_scalar_types.h, cpp_dslash_types.h: Oops 2008-09-15 13:10 bjoo * other_libs/cpp_wilson_dslash/include/: cpp_dslash_scalar_32bit.h, cpp_dslash_scalar_64bit.h: Hopefully no longer broken 2008-09-15 13:09 bjoo * other_libs/cpp_wilson_dslash/: configure, configure.ac, include/Makefile.am, include/cpp_dslash_parscalar_utils_32bit.h, include/cpp_dslash_parscalar_utils_64bit.h, include/cpp_dslash_scalar_32bit.h, include/cpp_dslash_scalar_32bit_sse.h, include/cpp_dslash_scalar_64bit.h, include/cpp_dslash_scalar_64bit_sse.h, include/dslash_config_internal.h.in, lib/cpp_dslash_3d_scalar_32bit.cc, lib/cpp_dslash_3d_scalar_64bit.cc, lib/cpp_dslash_scalar_32bit.cc, lib/cpp_dslash_scalar_64bit.cc: Added automagic, but broken 2008-09-14 11:33 edwards * tests/chroma/io/qio_write_obj/: qio_write_obj.ini.xml, qio_write_obj.out.xml: Updated regressions. 2008-09-14 11:27 edwards * tests/chroma/hadron/colorvec_matelem/colorvec_matelem.metric.xml: Updated according to new regressions. 2008-09-13 22:26 edwards * lib/meas/inline/io/: inline_io_aggregate.cc, inline_rng.cc, inline_rng.h: Added inline_rng - set the RNG seed. 2008-09-13 22:25 edwards * lib/Makefile.am: Added inline_rng.{h,cc}. 2008-09-13 17:40 edwards * lib/meas/inline/hadron/inline_meson_matelem_colorvec_w.cc: Added a comment. 2008-09-13 17:39 edwards * lib/meas/inline/hadron/inline_gauge_transf_obj.cc: Added gauge rotation of SubsetVectors. 2008-09-13 17:35 jbulava * tests/chroma/hadron/stoch_group_baryon/: stoch_group_baryon.ini.pl, stoch_group_baryon.ini.xml: Temporarily diabled the test of STOCH_GROUP_BARYON 2008-09-13 16:18 edwards * lib/meas/inline/io/qio_read_obj_funcmap.cc: Fixed the subsetvectors reader. 2008-09-13 16:17 edwards * tests/chroma/hadron/colorvec_matelem/: colorvec_matelem.ini.xml, colorvec_matelem.out.xml: Updated regression tests. 2008-09-13 15:57 edwards * lib/util/ferm/: subset_vectors.cc, subset_vectors.h: New class for holding subsets of vectors and their associate weights. 2008-09-13 15:56 edwards * lib/meas/inline/: hadron/inline_baryon_matelem_colorvec_w.cc, hadron/inline_meson_matelem_colorvec_w.cc, hadron/inline_prop_colorvec_w.cc, hadron/inline_prop_matelem_colorvec_w.cc, io/inline_eigen_bin_colvec_read_obj.cc, io/inline_eigen_lime_colvec_read_obj.cc, io/inline_gaussian_obj.cc, io/qio_read_obj_funcmap.cc, io/qio_write_obj_funcmap.cc: Changed all the uses of EigenInfo for holding time sliced lattice color vectors to a new SubsetVectors class. Added the weights into the meta-data within the dbs. 2008-09-13 15:54 edwards * lib/Makefile.am: Added subset_vectors.{h,cc} 2008-09-13 15:15 jbulava * lib/meas/inline/hadron/inline_stoch_group_baryon_w.cc: Fixed the segfault for version=1. version=2 works fine as well. Xml for this version forthcoming 2008-09-12 18:59 bjoo * other_libs/cpp_wilson_dslash/: include/Makefile.am, include/cpp_dslash_matvec32bit_c.h, include/cpp_dslash_matvec64bit_c.h, include/cpp_dslash_parscalar.h, include/cpp_dslash_parscalar_decomp_32bit_c.h, include/cpp_dslash_parscalar_decomp_32bit_sse2.h, include/cpp_dslash_parscalar_decomp_64bit_c.h, include/cpp_dslash_parscalar_decomp_64bit_sse2.h, include/cpp_dslash_parscalar_decomp_hvv_32bit_c.h, include/cpp_dslash_parscalar_decomp_hvv_32bit_sse2.h, include/cpp_dslash_parscalar_decomp_hvv_64bit_c.h, include/cpp_dslash_parscalar_decomp_hvv_64bit_sse2.h, include/cpp_dslash_parscalar_mvv_recons_32bit_c.h, include/cpp_dslash_parscalar_mvv_recons_32bit_sse2.h, include/cpp_dslash_parscalar_mvv_recons_64bit_c.h, include/cpp_dslash_parscalar_mvv_recons_64bit_sse2.h, include/cpp_dslash_parscalar_recons_32bit_c.h, include/cpp_dslash_parscalar_recons_32bit_sse2.h, include/cpp_dslash_parscalar_recons_64bit_c.h, include/cpp_dslash_parscalar_recons_64bit_sse2.h, include/cpp_dslash_parscalar_types.h, include/cpp_dslash_parscalar_utils_32bit.h, include/cpp_dslash_parscalar_utils_64bit.h, include/cpp_dslash_scalar.h, include/cpp_dslash_scalar_32bit.h, include/cpp_dslash_scalar_32bit_c.h, include/cpp_dslash_scalar_64bit.h, include/cpp_dslash_scalar_64bit_c.h, lib/cpp_dslash_3d_scalar_32bit.cc, lib/cpp_dslash_3d_scalar_64bit.cc, lib/cpp_dslash_parscalar_32bit.cc, lib/cpp_dslash_parscalar_3d_32bit.cc, lib/cpp_dslash_parscalar_3d_64bit.cc, lib/cpp_dslash_parscalar_64bit.cc, lib/cpp_dslash_scalar_32bit.cc, lib/cpp_dslash_scalar_64bit.cc, tests/testDslash3D.cc, tests/testDslashFull.cc: Added C equiv for scalar and parscalar. Fixed dp tests which were not really testing anything. Automagic needed to select sse version or C version. C version hardwired for now. Want to unroll loops in the 64bit matmults 2008-09-12 16:14 jbulava * lib/Makefile.am: Induced changes 2008-09-12 16:10 edwards * lib/meas/inline/io/inline_gaussian_obj.cc: Added a unit initialization of eigeinfo for latticecolorvector. 2008-09-12 15:47 jbulava * lib/meas/inline/io/: inline_eigen_lime_colvec_read_obj.cc, inline_eigen_lime_colvec_read_obj.h, inline_io_aggregate.cc: Added routines to handle io for eigenvectors in a lime file. 2008-09-11 19:46 bjoo * other_libs/cpp_wilson_dslash/include/: cpp_dslash_scalar_32bit_c.h, cpp_dslash_scalar_64bit_c.h: C-versions with no SSE 2008-09-10 17:27 kostas * lib/meas/inline/hadron/inline_qqqNucNuc_w.cc: fixed an other bug 2008-09-10 17:24 kostas * tests/chroma/hadron/qqqNucNuc/qqqNucNuc.out.xml: new output 2008-09-10 10:44 edwards * lib/meas/inline/hadron/inline_prop_matelem_colorvec_w.cc: Changed header line of task (for output). 2008-09-09 17:11 kostas * lib/meas/inline/hadron/inline_qqqNucNuc_w.cc: fixed an other bug 2008-09-09 16:35 kostas * lib/meas/inline/hadron/inline_qqqNucNuc_w.cc: fixed a bug... 2008-09-09 16:30 kostas * lib/meas/: hadron/qqq_w.cc, hadron/qqq_w.h, inline/hadron/inline_qqqNucNuc_w.cc, inline/hadron/inline_qqqNucNuc_w.h: added Decuplet to NPLQCD code 2008-09-08 17:39 edwards * tests/regres.pl: Changed stoch_meson and stoch_baryon regres dirs to stoch_group_meson and stoch_group_baryon. 2008-09-08 17:38 edwards * tests/chroma/hadron/stoch_group_baryon/: make_baryon_ops.metric.xml, regres.pl: Update regression tests. 2008-09-08 17:37 edwards * tests/chroma/hadron/stoch_group_meson/: make_meson_ops.metric.xml, regres.pl, stoch_group_meson.metric.xml: Updated regression tests. 2008-09-08 17:37 edwards * scripts/run_chroma_xmldiff.pl: Added ability to copy over auxilliary files. 2008-09-08 16:05 bjoo * lib/: actions/ferm/fermacts/fermacts_aggregate_s.cc, actions/ferm/fermacts/fermacts_aggregate_w.cc, actions/ferm/invert/multi_syssolver_mdagm_cg.h, update/molecdyn/monomial/one_flavor_rat_monomial_w.h: Committing hooked in accumulating solver into 4D rat_one_flavor monomial, actions etc 2008-09-08 14:40 bjoo * lib/actions/ferm/invert/minvcg2_accum.cc, lib/actions/ferm/invert/minvcg_accumulate_array.cc, mainprogs/tests/t_solver_accum.cc: I changed behaviour - I used the norm incorrectly. I hope this is now fixed 2008-09-08 12:03 bjoo * tests/t_solver_accum.ini.xml: Input file for t_solver_accum.cc 2008-09-08 12:01 bjoo * mainprogs/tests/t_solver_accum.cc: Test Program 2008-09-08 12:00 bjoo * lib/fermact.h, lib/stagtype_fermact_s.h, lib/syssolver.h, lib/wilstype_fermact_w.h, lib/actions/ferm/invert/minvcg_accumulate_array.cc, mainprogs/tests/Makefile.am: Accumulating solver ought to work now 2008-09-06 14:36 bjoo * lib/: actions/ferm/fermacts/klein_gordon_fermact_s.cc, actions/ferm/qprop/quarkprop4_s.cc, actions/ferm/qprop/quarkprop4_w.cc, Makefile.am: Enabled accumulate versions of the arrays in the qprop files, Makefile 2008-09-06 14:35 bjoo * lib/actions/ferm/invert/: minvcg2_accum.cc, minvcg_accumulate_array.cc, minvcg_accumulate_array.h, multi_syssolver_mdagm_accumulate_aggregate.cc, multi_syssolver_mdagm_accumulate_factory.h, multi_syssolver_mdagm_aggregate.cc, multi_syssolver_mdagm_cg_accumulate.cc, multi_syssolver_mdagm_cg_accumulate_array.cc, multi_syssolver_mdagm_cg_accumulate_array.h: Added initial cut of MdagM versions of the accumulate solvers for arrays 2008-09-05 09:59 edwards * lib/meas/hadron/: hybmeson_w.cc, hybmeson_w.h: Did some indenting. 2008-09-04 15:13 edwards * tests/chroma/hadron/colorvec_matelem/: colorvec_matelem.ini.xml, colorvec_matelem.out.xml: Added some more displacements. 2008-09-04 15:11 edwards * tests/chroma/hadron/colorvec_matelem/: colorvec_matelem.ini.xml, colorvec_matelem.out.xml: Added all 2 link displacements for test. 2008-09-03 09:59 bjoo * other_libs/cpp_wilson_dslash/include/: shift_table_3d_parscalar.h, shift_table_parscalar.h: For weird reasons there were oopsies here 2008-09-03 09:50 bjoo * other_libs/cpp_wilson_dslash/tests/timeDslash3D.cc: Ooops. Had wrong flopcount in the single prec test here 2008-09-02 16:10 bjoo * lib/: Makefile.am, syssolver.h: Added Accumulating Syssolver structure 2008-09-02 16:10 bjoo * lib/actions/ferm/invert/: minvcg2_accum.cc, minvcg2_accum.h, multi_syssolver_mdagm.h, multi_syssolver_mdagm_accumulate.h, multi_syssolver_mdagm_accumulate_aggregate.cc, multi_syssolver_mdagm_accumulate_aggregate.h, multi_syssolver_mdagm_accumulate_factory.h, multi_syssolver_mdagm_cg.h, multi_syssolver_mdagm_cg_accumulate.cc, multi_syssolver_mdagm_cg_accumulate.h: Added Accumulating Syssolver first cut. 4D only so far 2008-08-31 21:44 edwards * lib/meas/inline/hadron/: inline_genprop_matelem_colorvec_w.cc, inline_genprop_matelem_colorvec_w.h: First start at a generalized propagator. 2008-08-31 21:44 edwards * lib/meas/inline/hadron/inline_prop_matelem_colorvec_w.cc: Write out lattice size in db file. 2008-08-31 21:43 edwards * lib/meas/inline/hadron/: inline_baryon_matelem_colorvec_w.cc, inline_meson_matelem_colorvec_w.cc: Changed no-displacement to be an empty array. 2008-08-26 22:11 edwards * lib/meas/hadron/heavy_hadrons_su3_w.cc: Corrected some arguments to the QllBlock constructors as per the request from Will Detmold. 2008-08-26 16:12 edwards * lib/meas/inline/hadron/inline_baryon_matelem_colorvec_w.cc: Changed the cache and page size for the DB. 2008-08-26 15:37 edwards * lib/meas/inline/hadron/inline_meson_matelem_colorvec_w.cc: Changed to use a fixed cache and page size. 2008-08-26 09:24 tag start 2008-08-26 09:24 bjoo * other_libs/cpp_wilson_dslash/: AUTHORS, COPYING, INSTALL, Makefile.am, NEWS, README, acinclude.m4, aclocal.m4, configure, configure.ac, config/config.guess, config/config.sub, config/depcomp, config/install-sh, config/missing, include/Makefile.am, include/cache.h, include/cpp_dslash.h, include/cpp_dslash_parscalar.h, include/cpp_dslash_parscalar_decomp_32bit_sse2.h, include/cpp_dslash_parscalar_decomp_64bit_sse2.h, include/cpp_dslash_parscalar_decomp_hvv_32bit_sse2.h, include/cpp_dslash_parscalar_decomp_hvv_64bit_sse2.h, include/cpp_dslash_parscalar_mvv_recons_32bit_sse2.h, include/cpp_dslash_parscalar_mvv_recons_64bit_sse2.h, include/cpp_dslash_parscalar_recons_32bit_sse2.h, include/cpp_dslash_parscalar_recons_64bit_sse2.h, include/cpp_dslash_parscalar_types.h, include/cpp_dslash_parscalar_utils_32bit.h, include/cpp_dslash_parscalar_utils_64bit.h, include/cpp_dslash_qdp_packer.h, include/cpp_dslash_scalar.h, include/cpp_dslash_scalar_32bit.h, include/cpp_dslash_scalar_64bit.h, include/cpp_dslash_scalar_types.h, include/dispatch_parscalar.h, include/dispatch_scalar.h, include/dslash_config.h, include/dslash_config_internal.h.in, include/shift_table_3d_parscalar.h, include/shift_table_3d_scalar.h, include/shift_table_parscalar.h, include/shift_table_parscalar_types.h, include/shift_table_scalar.h, include/sse_sign_32bit.h, include/sse_sign_64bit.h, include/tables_parscalar.h, lib/Makefile.am, lib/cpp_dslash_3d_scalar_32bit.cc, lib/cpp_dslash_3d_scalar_64bit.cc, lib/cpp_dslash_parscalar_32bit.cc, lib/cpp_dslash_parscalar_3d_32bit.cc, lib/cpp_dslash_parscalar_3d_64bit.cc, lib/cpp_dslash_parscalar_64bit.cc, lib/cpp_dslash_scalar_32bit.cc, lib/cpp_dslash_scalar_64bit.cc, lib/dispatch_parscalar.cc, lib/dispatch_parscalar_openmp.cc, lib/dispatch_parscalar_qmt.cc, lib/dispatch_scalar.cc, lib/dispatch_scalar_openmp.cc, lib/dispatch_scalar_qmt.cc, lib/qdp_packer_3d.cc, lib/qdp_packer_nopad.cc, lib/shift_table_scalar.cc, tests/Makefile.am, tests/dslash_3d_w.cc, tests/dslash_3d_w.h, tests/dslashm_w.cc, tests/dslashm_w.h, tests/reunit.cc, tests/reunit.h, tests/sse32.h, tests/sse64.h, tests/t_dslash.cc, tests/t_dslash_3d.cc, tests/t_site_ops_parscalar.cc, tests/t_site_ops_scalar.cc, tests/testDecomp.h, tests/testDecomp32bit.cc, tests/testDecomp64bit.cc, tests/testDecompHvv.h, tests/testDecompHvv32bit.cc, tests/testDecompHvv64bit.cc, tests/testDslash3D.cc, tests/testDslash3D.h, tests/testDslashFull.cc, tests/testDslashFull.h, tests/testMvvRecons.h, tests/testMvvRecons32bit.cc, tests/testMvvRecons64bit.cc, tests/testRecons.h, tests/testRecons32bit.cc, tests/testRecons64bit.cc, tests/testSiteDslash.h, tests/testSiteDslash32bit.cc, tests/testSiteDslash64bit.cc, tests/testvol.h, tests/timeDecomp.cc, tests/timeDecomp.h, tests/timeDslash.cc, tests/timeDslash.h, tests/timeDslash3D.cc, tests/timeDslash3D.h, tests/time_decomp.cc, tests/time_dslash.cc, tests/time_dslash_3d.cc, tests/unittest.h: Initial import 2008-08-26 09:24 bjoo * other_libs/cpp_wilson_dslash/: AUTHORS, COPYING, INSTALL, Makefile.am, NEWS, README, acinclude.m4, aclocal.m4, configure, configure.ac, config/config.guess, config/config.sub, config/depcomp, config/install-sh, config/missing, include/Makefile.am, include/cache.h, include/cpp_dslash.h, include/cpp_dslash_parscalar.h, include/cpp_dslash_parscalar_decomp_32bit_sse2.h, include/cpp_dslash_parscalar_decomp_64bit_sse2.h, include/cpp_dslash_parscalar_decomp_hvv_32bit_sse2.h, include/cpp_dslash_parscalar_decomp_hvv_64bit_sse2.h, include/cpp_dslash_parscalar_mvv_recons_32bit_sse2.h, include/cpp_dslash_parscalar_mvv_recons_64bit_sse2.h, include/cpp_dslash_parscalar_recons_32bit_sse2.h, include/cpp_dslash_parscalar_recons_64bit_sse2.h, include/cpp_dslash_parscalar_types.h, include/cpp_dslash_parscalar_utils_32bit.h, include/cpp_dslash_parscalar_utils_64bit.h, include/cpp_dslash_qdp_packer.h, include/cpp_dslash_scalar.h, include/cpp_dslash_scalar_32bit.h, include/cpp_dslash_scalar_64bit.h, include/cpp_dslash_scalar_types.h, include/dispatch_parscalar.h, include/dispatch_scalar.h, include/dslash_config.h, include/dslash_config_internal.h.in, include/shift_table_3d_parscalar.h, include/shift_table_3d_scalar.h, include/shift_table_parscalar.h, include/shift_table_parscalar_types.h, include/shift_table_scalar.h, include/sse_sign_32bit.h, include/sse_sign_64bit.h, include/tables_parscalar.h, lib/Makefile.am, lib/cpp_dslash_3d_scalar_32bit.cc, lib/cpp_dslash_3d_scalar_64bit.cc, lib/cpp_dslash_parscalar_32bit.cc, lib/cpp_dslash_parscalar_3d_32bit.cc, lib/cpp_dslash_parscalar_3d_64bit.cc, lib/cpp_dslash_parscalar_64bit.cc, lib/cpp_dslash_scalar_32bit.cc, lib/cpp_dslash_scalar_64bit.cc, lib/dispatch_parscalar.cc, lib/dispatch_parscalar_openmp.cc, lib/dispatch_parscalar_qmt.cc, lib/dispatch_scalar.cc, lib/dispatch_scalar_openmp.cc, lib/dispatch_scalar_qmt.cc, lib/qdp_packer_3d.cc, lib/qdp_packer_nopad.cc, lib/shift_table_scalar.cc, tests/Makefile.am, tests/dslash_3d_w.cc, tests/dslash_3d_w.h, tests/dslashm_w.cc, tests/dslashm_w.h, tests/reunit.cc, tests/reunit.h, tests/sse32.h, tests/sse64.h, tests/t_dslash.cc, tests/t_dslash_3d.cc, tests/t_site_ops_parscalar.cc, tests/t_site_ops_scalar.cc, tests/testDecomp.h, tests/testDecomp32bit.cc, tests/testDecomp64bit.cc, tests/testDecompHvv.h, tests/testDecompHvv32bit.cc, tests/testDecompHvv64bit.cc, tests/testDslash3D.cc, tests/testDslash3D.h, tests/testDslashFull.cc, tests/testDslashFull.h, tests/testMvvRecons.h, tests/testMvvRecons32bit.cc, tests/testMvvRecons64bit.cc, tests/testRecons.h, tests/testRecons32bit.cc, tests/testRecons64bit.cc, tests/testSiteDslash.h, tests/testSiteDslash32bit.cc, tests/testSiteDslash64bit.cc, tests/testvol.h, tests/timeDecomp.cc, tests/timeDecomp.h, tests/timeDslash.cc, tests/timeDslash.h, tests/timeDslash3D.cc, tests/timeDslash3D.h, tests/time_decomp.cc, tests/time_dslash.cc, tests/time_dslash_3d.cc, tests/unittest.h: Initial revision 2008-08-21 17:11 edwards * lib/meas/inline/io/: inline_gaussian_obj.cc, qio_read_obj_funcmap.cc, qio_write_obj_funcmap.cc: Added new gaussian into of a MapObject for the keypropcolorvec. 2008-08-21 17:10 edwards * tests/chroma/hadron/colorvec_matelem/: colorvec_matelem.ini.xml, colorvec_matelem.metric.xml, colorvec_matelem.out.xml: Added new tasks. 2008-08-21 13:45 edwards * lib/meas/inline/hadron/inline_prop_matelem_colorvec_w.cc: Changed storage order for props. Now, write/read an entire NxN matrix for each spins source and sink component. 2008-08-19 00:59 edwards * lib/meas/inline/hadron/inline_prop_matelem_colorvec_w.cc: Changed to using a fixed record DB. 2008-08-18 15:45 jbulava * lib/meas/inline/hadron/inline_stoch_group_baryon_w.cc: cleaned up the added sft options 2008-08-18 14:23 jbulava * lib/: meas/inline/hadron/inline_stoch_group_baryon_w.cc, meas/inline/hadron/inline_stoch_group_baryon_w.h, util/ft/sftmom.cc, util/ft/sftmom.h: Added an additional constructor to sftmom class that allows a list of momenta to be calculated rather than all momenta less that a max value. 2008-08-18 14:10 edwards * lib/meas/inline/io/qio_read_obj_funcmap.cc: Added a check if buffer_id exists for ReadMapObject. The map allows me to keep reading into an existing map. 2008-08-18 10:53 edwards * tests/chroma/hadron/colorvec_matelem/colorvec_matelem.metric.xml: Fixed path. 2008-08-17 11:13 edwards * tests/chroma/hadron/colorvec_matelem/colorvec_matelem.metric.xml: Changed metric to new task order. 2008-08-16 01:08 edwards * lib/util/ferm/map_obj.h: Added iterators (begin and end), and add size() function. 2008-08-16 01:07 edwards * lib/meas/inline/hadron/inline_prop_colorvec_w.cc: Added XML file and record xml for output propagator. 2008-08-16 01:06 edwards * lib/meas/inline/io/: qio_read_obj_funcmap.cc, qio_write_obj_funcmap.cc: Added functions to support writing and reading MapObject . 2008-08-16 01:05 edwards * tests/chroma/hadron/colorvec_matelem/: colorvec_matelem.ini.xml, colorvec_matelem.out.xml: Added new IO tasks. 2008-08-14 11:08 edwards * lib/meas/inline/hadron/inline_meson_matelem_colorvec_w.cc: Added proper check of momentum and displacements for the type_of_data flag. 2008-08-13 23:17 edwards * lib/meas/inline/hadron/inline_meson_matelem_colorvec_w.cc: Turned back on the optimizations for sparsity of the contractions. 2008-08-12 15:52 bjoo * lib/meas/inline/io/: qio_read_obj_funcmap.cc, qio_write_obj_funcmap.cc: Untemplated the reader/writer for EigenInfo to cure SDSC Build problem. I dont think there was actually any problem with the code so I resent the duplication, but the compiler on BGL bombed and I guess that is the decider. Also removed a duplicate registration from the writer funcmap 2008-08-11 23:42 edwards * lib/meas/inline/hadron/inline_meson_matelem_colorvec_w.cc: Turned off optimizations for the moment. 2008-08-11 06:45 mcneile * lib/actions/ferm/qprop/eoprec_staggered_qprop.h: I am fixing a bug where the minimum number of iterations is not passed to the inverter. 2008-08-06 13:58 edwards * tests/chroma/hadron/colorvec_matelem/: colorvec_matelem.ini.xml, colorvec_matelem.out.xml: Updated regression tests. 2008-08-06 13:58 edwards * lib/meas/inline/hadron/: inline_baryon_matelem_colorvec_w.cc, inline_baryon_matelem_colorvec_w.h, inline_meson_matelem_colorvec_w.cc, inline_meson_matelem_colorvec_w.h: Added optimizations to output values. 2008-08-06 11:27 edwards * tests/chroma/hadron/colorvec_matelem/: colorvec_matelem.metric.xml, regres.pl: Fixed. 2008-08-06 11:24 edwards * tests/chroma/hadron/colorvec_matelem/regres.pl: Regression test. 2008-08-06 11:20 edwards * lib/meas/inline/hadron/: inline_baryon_matelem_colorvec_w.cc, inline_meson_matelem_colorvec_w.cc, inline_prop_matelem_colorvec_w.cc, inline_prop_matelem_colorvec_w.h: Switched to using BinaryVarDB (Berkeley DB) as the new storage method. 2008-08-06 11:19 edwards * lib/: Makefile.am, meas/smear/disp_colvec_map.cc, meas/smear/disp_colvec_map.h: Added disp_colvec_map - holds displaced colorvectors out of an array. 2008-08-06 11:18 edwards * tests/: regres.pl, chroma/hadron/colorvec_matelem/colorvec_matelem.ini.xml, chroma/hadron/colorvec_matelem/colorvec_matelem.metric.xml, chroma/hadron/colorvec_matelem/colorvec_matelem.out.xml: Hooked in new regressions. 2008-08-05 00:17 edwards * lib/Makefile.am: Added key_val_db.h 2008-08-05 00:15 edwards * lib/util/ferm/key_val_db.h: Provides a Serializable harness for chroma objects. 2008-08-02 23:26 edwards * lib/chroma_config_internal.h.in, configure: Induced changes. 2008-08-02 23:25 edwards * aclocal.m4: Induced changes 2008-08-02 23:25 edwards * mainprogs/tests/t_db.cc: Moved to qdp++. 2008-08-02 23:25 edwards * configure.ac, lib/Makefile.am, mainprogs/main/Makefile.am, mainprogs/tests/Makefile.am, other_libs/Makefile.am: Removed from chroma the configuring of ffdb-lite - moved it to QDP++. Now, pick up from qdp-config a new --db-enabled flag (that is yes/no), and if yes then turn on an automake flag. 2008-08-02 23:14 tag chroma3-30-2 2008-08-02 23:14 edwards * NEWS: Fixed info on 3.30.2 2008-08-02 23:08 edwards * NEWS: Info on 3.30.1 2008-07-31 22:43 bjoo * other_libs/sse_wilson_dslash/lib/: sse_su3dslash_32bit_parscalar.c, sse_su3dslash_64bit_parscalar.c: Ooops. timeDecomp should see the chis now 2008-07-30 16:25 bjoo * other_libs/sse_wilson_dslash/: aclocal.m4, configure, configure.ac, include/shift_tables_parscalar.h, include/sse_config_internal.h.in, lib/shift_tables_parscalar.c, lib/sse_su3dslash_32bit_parscalar.c, lib/sse_su3dslash_64bit_parscalar.c, tests/Makefile.am, tests/timeDslash.cc: OK, I rearranged the comms in the non 3d guys. The offset table is now an actual pointer table into the chis and the send and receive buffers directly. The comms bufs no longer live in the chi1 and chi2 arrays. The chi1 and chi2 arrays are consequentially now one 3rd their previous size and so cache locality ought to be better. I did this mainly so that I can play games with the alignment/placement of the comms buffers. This may or may not be helpful on the Cray machines or so. I also put in autoconf hooks to enable and disable the compute or comms parts for diagnostics. These are off by default. The code appears to work correctly 2008-07-30 15:27 tag chroma3-30-1 2008-07-30 15:27 edwards * mainprogs/tests/t_db.cc: Working. 2008-07-23 22:53 edwards * configure: Induced changes. 2008-07-23 22:51 edwards * aclocal.m4: Induced changes 2008-07-23 22:51 edwards * mainprogs/tests/t_db.cc: Start of Berkeley DB tester. 2008-07-23 22:51 edwards * mainprogs/tests/Makefile.am: Added DB flags. Added t_db.cc 2008-07-23 22:49 edwards * configure.ac: Added a --enable-db to force the correct paths to Berkeley DB if needed. Fixed up the handling of db-lite. 2008-07-22 13:50 edwards * lib/Makefile.am: Turned on BUILD_FFDB_LITE. 2008-07-22 13:41 bjoo * lib/update/molecdyn/monomial/: unprec_one_flavor_rat_monomial_w.cc, unprec_one_flavor_ratio_rat_conv_monomial_w.cc, unprec_one_flavor_ratio_rat_rat_monomial_w.cc: Removed downcasts in unprec rat monomials to allow use of temp_prec type stuff 2008-07-22 12:03 edwards * aclocal.m4, lib/chroma_config_internal.h.in, configure: Induced changes 2008-07-22 12:03 edwards * configure.ac: Changed to 3.31.0 2008-07-22 11:53 edwards * aclocal.m4: Induced changes 2008-07-22 11:52 edwards * mainprogs/tests/Makefile.am: Added optional build for ffdb-lite. 2008-07-22 11:50 edwards * mainprogs/main/Makefile.am, other_libs/Makefile.am: Added optional builds for ffdb-lite. 2008-07-22 11:49 edwards * configure.ac: Added enable for ffdb-lite. 2008-07-21 14:44 kostas * aclocal.m4, configure, lib/Makefile.am, lib/meas/hadron/hadron_w.h, lib/meas/inline/hadron/inline_hadron_aggregate.cc: Will's static light code 2008-07-21 14:15 tag chroma3-30-0 2008-07-21 14:15 kostas * lib/meas/inline/hadron/: inline_heavyhadspec_w.cc, inline_heavyhadspec_w.h, inline_static_light_spec_w.cc, inline_static_light_spec_w.h, inline_stoch_hadron_w.cc: added Will's static light potentials 2008-07-21 13:59 kostas * lib/meas/hadron/: heavy_hadron_potentials_w.cc, heavy_hadron_potentials_w.h, heavy_hadrons_su3_w.cc, heavy_hadrons_su3_w.h: Will's static light potentials and spectrum 2008-07-20 22:33 edwards * lib/util/ferm/: staggered_operators_s.cc, staggered_operators_s.h, tdiractodr.cc, tdiractodr.h: Some small code cleanups - no functional change. 2008-07-20 22:32 edwards * tests/chroma/hadron/colorvec_matelem/: colorvec_matelem.ini.xml, colorvec_matelem.out.xml: New regression input and output. 2008-07-20 22:32 edwards * lib/: Makefile.am, util/ferm/key_prop_colorvec.cc, util/ferm/key_prop_colorvec.h, util/ferm/map_obj.h: Added key_prop_colorvec and map_obj. The latter is a wrapper over std::map, and the former uses them. 2008-07-20 22:30 edwards * lib/meas/inline/hadron/: inline_hadron_aggregate.cc, inline_prop_colorvec_w.cc, inline_prop_matelem_colorvec_w.cc, inline_prop_matelem_colorvec_w.h: Split apart the prop_matelem_colorvec code into a separate code that computes just the solution vectors, and the old prop_matelem_colorvec just does the contractions. 2008-07-20 22:16 edwards * lib/meas/inline/hadron/: inline_prop_colorvec_w.cc, inline_prop_colorvec_w.h: Calculates just the propagator on a colorvector - no final contraction. 2008-07-02 17:22 edwards * lib/meas/inline/hadron/inline_meson_matelem_colorvec_w.cc: Small cleanup on initialization of displacements. 2008-07-02 17:21 edwards * lib/meas/inline/hadron/: inline_baryon_matelem_colorvec_w.cc, inline_baryon_matelem_colorvec_w.h, inline_hadron_aggregate.cc: Added inline_baryon_matelem_colorvec_w 2008-07-02 17:21 edwards * lib/Makefile.am: Added inline_baryon_matelem_colorvec.{h,cc} 2008-06-30 11:09 edwards * lib/meas/inline/hadron/inline_meson_matelem_colorvec_w.cc: Changed some print statements. Commented out more timing for maps. 2008-06-30 10:14 edwards * lib/meas/inline/hadron/inline_meson_matelem_colorvec_w.cc: Removed timing printout from map call - too much stuff. 2008-06-29 23:58 edwards * lib/meas/inline/hadron/inline_meson_matelem_colorvec_w.cc: Commented out xml debugging of meson object. 2008-06-29 23:57 edwards * lib/meas/inline/hadron/inline_prop_matelem_colorvec_w.cc: Commented out XML debugging or prop objects. 2008-06-29 17:26 edwards * lib/meas/inline/io/inline_eigen_bin_colvec_read_obj.cc: Fixed writing of record_xml. 2008-06-29 16:33 edwards * lib/meas/eig/: gramschm.cc, gramschm.h: Added suppose for LatticeColorVector. 2008-06-29 16:23 edwards * tests/chroma/hadron/colorvec_matelem/: colorvec_matelem.ini.xml, colorvec_matelem.out.xml: New regression for colorvector matrix elements. 2008-06-29 16:17 edwards * lib/meas/inline/io/: inline_eigen_bin_colvec_read_obj.cc, inline_eigen_bin_colvec_read_obj.h: Changed to read an array of filenames. 2008-06-29 16:17 edwards * lib/meas/inline/io/inline_gaussian_obj.cc: Added orthogonalization of evs in init for EigenInfo. 2008-06-29 16:16 edwards * lib/meas/inline/io/inline_io_aggregate.cc: Added InlineEigenBinColVecReadNamedObjEnv 2008-06-28 23:06 edwards * lib/meas/inline/hadron/: inline_prop_matelem_colorvec_w.cc, inline_prop_matelem_colorvec_w.h: Now write propagator matrix elements to a lime file. 2008-06-28 23:06 edwards * lib/meas/inline/hadron/: inline_meson_matelem_colorvec_w.cc, inline_meson_matelem_colorvec_w.h: Got rid of a separate displacement file. Now take it from the input xml. 2008-06-27 16:30 bjoo * tests/regres.pl: Oops. Wasn't supposed to check in this 2008-06-27 16:24 bjoo * configure, configure.ac, lib/Makefile.am, lib/chroma_config_internal.h.in, lib/actions/ferm/invert/invcg2.cc, lib/actions/ferm/linop/clover_term_w.h, mainprogs/tests/t_clover.cc, tests/regres.pl: Added SSED CLover 2008-06-27 16:22 bjoo * lib/actions/ferm/linop/: clover_apply_ssed.cc, clover_term_ssed.cc, clover_term_ssed.h: Added SSE Double Prec Kernels for applying clover 2008-06-27 11:19 edwards * configure: Induced changes 2008-06-27 11:16 edwards * aclocal.m4: Induced changes 2008-06-27 11:08 edwards * lib/Makefile.am: Commented out FFDB lite. 2008-06-27 05:48 mcneile * tests/spectrum_s/: spectrum_s.ini.xml, spectrum_s.out.xml, spectrum_s_HISQ.ini.xml, spectrum_s_HISQ.out.xml: Added new parameters. THis should fix the regression failures (possibly). 2008-06-27 05:34 mcneile * lib/meas/inline/hadron_s/: inline_spectrum_s.cc, inline_spectrum_s.h, util_compute_quark_prop_s.cc, util_compute_quark_prop_s.h: I have added code for the noisy wall source. 2008-06-27 02:15 edwards * lib/meas/inline/hadron/inline_prop_matelem_colorvec_w.cc: Made a write group for the prop mat elem. 2008-06-27 02:14 edwards * lib/meas/inline/hadron/inline_meson_matelem_colorvec_w.cc: Added total number of elements to binary payload. 2008-06-26 11:23 mcneile * tests/spectrum_s/: spectrum_s.ini.xml, spectrum_s_HISQ.ini.xml: Added new arguments. 2008-06-26 11:20 mcneile * lib/meas/inline/hadron_s/: inline_spectrum_s.cc, inline_spectrum_s.h, util_compute_quark_prop_s.cc: I have added calls for Wilson loops adn charm mesons. 2008-06-26 11:12 mcneile * lib/Makefile.am: I have added routine for second local pion. 2008-06-26 11:10 mcneile * lib/meas/hadron/: g4g5_x_g4g5_local.cc, g4g5_x_g4g5_local.h: A routine to compute the g4g5 cross g4g5 local pion. 2008-06-26 11:08 mcneile * lib/meas/hadron/: vector_meson_s.cc, vector_meson_s.h: I have fixed a bug in this routine. 2008-06-26 11:04 mcneile * lib/meas/hadron/: pion_local_s.cc, pion_local_s.h: I have added momentum to this routine. 2008-06-26 11:02 mcneile * lib/Makefile.am: Added Wilson loop code. 2008-06-26 10:59 mcneile * lib/meas/glue/glue.h: Load in the new Wilson loop routines. 2008-06-26 10:58 mcneile * lib/meas/glue/: wloop.cc, wloop.h: Some Wilson loop routines. These are used to compute alpha_s the HPQCD way. Perhaps these are already computed elsewhere, but I couldn't undertsnad the existing code and was nervous about calls to axial guage fixing routines. 2008-06-24 16:57 edwards * lib/util/gauge/sunfill.cc: Removed templates since no longer needed. 2008-06-21 01:14 edwards * lib/meas/inline/hadron/inline_meson_matelem_colorvec_w.cc: Needed to initialize the objects in the displacement map. 2008-06-21 00:26 edwards * lib/meas/inline/hadron/inline_hadron_aggregate.cc: Added inline_meson_matelem_colorvec. 2008-06-21 00:20 edwards * lib/Makefile.am: Added inline_meson_matelem_colorvec_w. 2008-06-21 00:19 edwards * lib/meas/inline/hadron/: inline_meson_matelem_colorvec_w.cc, inline_meson_matelem_colorvec_w.h: First version. Compute meson operators via colorvector matrix elements. 2008-06-21 00:19 edwards * lib/meas/inline/hadron/: inline_prop_matelem_colorvec_w.h, inline_prop_matelem_colorvec_w.cc: Added array of t_sources. 2008-06-20 20:43 bjoo * lib/actions/ferm/invert/minvcg2.cc: Moved things around to potentially improve cache reuse 2008-06-20 11:17 edwards * lib/meas/inline/hadron/inline_stoch_group_meson_w.cc: Fixed source indices in contractOp. 2008-06-18 17:38 edwards * lib/meas/inline/io/: inline_eigen_bin_colvec_read_obj.cc, inline_eigen_bin_colvec_read_obj.h, inline_nersc_read_obj.h: Reads a binary dump of an LatticeColorVector and eigenvalues. 2008-06-18 17:37 edwards * lib/Makefile.am: Added inline_eigen_bin_colvec_read_obj.{h,cc} 2008-06-18 11:06 edwards * tests/spectrum_s/: spectrum_s.out.xml, spectrum_s_HISQ.out.xml: Updated for new tags in ProgramInfo. 2008-06-18 11:03 edwards * tests/hmc/: hmc.prec_wilson.log.xml, hmc.prec_wilson.out.xml, hmc.prec_wilson_repro.log.xml, hmc.prec_wilson_repro.out.xml: Updated for new tags in ProgramInfo. 2008-06-18 11:00 edwards * tests/chroma/hadron/propagator/: unprec-zolo-ev-multi.ini.xml, unprec-zolo-ev-multi.out.xml: Updated regression for new EigenInfo tags. 2008-06-17 17:05 edwards * tests/chroma/eig/: ritz_Hw-v1.ini.xml, ritz_Hw-v1.out.xml: Updated to use new tags. 2008-06-17 16:54 edwards * lib/meas/inline/hadron/inline_prop_matelem_colorvec_w.cc: Fixed location of closing namespace. 2008-06-17 16:50 edwards * lib/actions/ferm/fermstates/eigen_state.h: Now uses EigenInfo as a template. 2008-06-17 16:41 edwards * lib/meas/inline/hadron/inline_hadron_aggregate.cc: Added PropMatElemColorVec 2008-06-17 13:46 edwards * lib/: meas/inline/hadron/inline_prop_matelem_colorvec_w.cc, meas/inline/hadron/inline_prop_matelem_colorvec_w.h, Makefile.am: Added new colorvector matrix element of a propagator. 2008-06-17 12:10 edwards * lib/meas/inline/io/: qio_read_obj_funcmap.cc, qio_write_obj_funcmap.cc: Now use templates directly in callbacks for EigenInfo. 2008-06-17 12:10 edwards * lib/meas/inline/io/inline_gaussian_obj.cc: New eigeninfo generator. 2008-06-17 12:09 edwards * tests/chroma/io/qio_write_obj/: qio_write_obj.ini.xml, qio_write_obj.out.xml: Updated to use new eigeninfo stuff. 2008-06-17 11:36 edwards * lib/: meas/inline/eig/inline_ritz_H_w.cc, meas/inline/io/qio_read_obj_funcmap.cc, meas/inline/io/qio_write_obj_funcmap.cc, util/ferm/eigeninfo.h: Changed EigenInfo to be a template instead of hard-wiring LatticeFermion. The eigenvalues are always RealD, though. 2008-06-06 13:24 bjoo * tests/t_remez.ini.xml: Added an own directory for t_remez, so I can remove this 2008-06-06 13:23 bjoo * tests/t_remez/: remez_light_action.ini.xml, remez_light_force.ini.xml, remez_strange_action.ini.xml, remez_strange_force.ini.xml: Sample inputs for t_remez 2008-06-06 13:15 bjoo * mainprogs/tests/t_remez.cc: Made t_remez input more like the monomial input. Made output directly usable in monomials (modulo removal of root tag) 2008-06-05 15:58 edwards * tests/chroma/: gfix/coulgauge/coulgauge.out.xml, glue/fuzwilp/fuzwilp.out.xml, glue/gaugestate/gaugestate.out.xml, glue/qtop_naive/qtop_naive.out.xml, glue/wilslp/wilslp.out.xml, hadron_s/make_source/make_source_s.out.xml, hadron_s/propagator/asqtad.out.xml, hadron_s/propagator/klein_gordon.out.xml, hadron_s/sink_smear/sink_smearing_s.out.xml, io/nersc_read_obj/nersc_read_obj.out.xml, io/nersc_write_obj/nersc_write_obj.out.xml, io/qio_read_obj/qio_read_obj.out.xml, io/qio_write_obj/qio_write_obj.out.xml, io/szin_read_obj/szin_read_obj.out.xml, io/szin_write_obj/szin_write_obj.out.xml, io/usqcd_ddpairs_prop/usqcd_prop_readwrite_internal.out.xml, schrfun/schrfun-hadspec.out.xml, schrfun/schrfun-pcac.out.xml, smear/link_smear/link_smear.out.xml: Updated regressions yet again. 2008-06-04 23:33 edwards * tests/chroma/: eig/eigbnds.out.xml, eig/ritz_Hw-v1.out.xml, gfix/coulgauge/coulgauge.out.xml, glue/fuzwilp/fuzwilp.out.xml, glue/gaugestate/gaugestate.out.xml, glue/qtop_naive/qtop_naive.out.xml, glue/wilslp/wilslp.out.xml, hadron/bar3ptfn/bar3ptfn.out.xml, hadron/building_blocks/bb-baryon.out.xml, hadron/building_blocks/bb-deriv.out.xml, hadron/building_blocks/bb-meson.out.xml, hadron/fermstate/fermstate.out.xml, hadron/gauge_transf/gauge_transf.out.xml, hadron/hadron_contract/meson_2pt/meson_2pt.out.xml, hadron/hadron_contract/stoch_condensates/stoch_condensates.out.xml, hadron/hadspec/hadspec.out.xml, hadron/make_source/dilute.out.xml, hadron/make_source/make_source.out.xml, hadron/make_source/source-deriv.out.xml, hadron/make_source/source-displace.out.xml, hadron/mesonspec/mesonspec.out.xml, hadron/mres/mres.out.xml, hadron/noisy_building_blocks/nbb.out.xml, hadron/propagator/eo3dprec_s_cprec_t_clover.out.xml, hadron/propagator/eo3dprec_s_cprec_t_wilson.out.xml, hadron/propagator/iluprec_s_cprec_t_clover.bicgstab.out.xml, hadron/propagator/iluprec_s_cprec_t_clover.out.xml, hadron/propagator/iluprec_s_cprec_t_clover_schr1link.out.xml, hadron/propagator/iluprec_s_cprec_t_clover_schr2link.out.xml, hadron/propagator/iluprec_s_cprec_t_clover_schr2link_space.out.xml, hadron/propagator/iluprec_s_cprec_t_wilson.out.xml, hadron/propagator/iluprec_s_cprec_t_wilson_schr1link.out.xml, hadron/propagator/iluprec_s_cprec_t_wilson_schr2link.out.xml, hadron/propagator/iluprec_s_cprec_t_wilson_schr2link_space.out.xml, hadron/propagator/prec_clover-stout3d.bicgstab.out.xml, hadron/propagator/prec_clover-stout3d.mr.out.xml, hadron/propagator/prec_clover-stout3d.out.xml, hadron/propagator/prec_clover.eigcg.out.xml, hadron/propagator/prec_clover.out.xml, hadron/propagator/prec_dwf.eigcg.out.xml, hadron/propagator/prec_dwf.out.xml, hadron/propagator/prec_ht_contfrac5d.out.xml, hadron/propagator/prec_ovext.out.xml, hadron/propagator/prec_ovlap_contfrac5d.out.xml, hadron/propagator/prec_parwilson.out.xml, hadron/propagator/prec_wilson-smearing.out.xml, hadron/propagator/prec_wilson-twisted.out.xml, hadron/propagator/prec_wilson.2+2.out.xml, hadron/propagator/prec_wilson.ferm.out.xml, hadron/propagator/prec_wilson.out.xml, hadron/propagator/prec_zolo_nef.out.xml, hadron/propagator/unprec-ovlap-zolo4d.out.xml, hadron/propagator/unprec-zolo-ev-multi.out.xml, hadron/propagator/unprec_clover.out.xml, hadron/propagator/unprec_dwftransf.out.xml, hadron/propagator/unprec_graphene.out.xml, hadron/propagator/unprec_hamberwu.out.xml, hadron/propagator/unprec_ovext.out.xml, hadron/propagator/unprec_ovlap_contfrac5d.out.xml, hadron/propagator/unprec_s_cprec_t_wilson.out.xml, hadron/propagator/unprec_s_cprec_t_wilson_schr1link.out.xml, hadron/propagator/unprec_s_cprec_t_wilson_schr2link.out.xml, hadron/propagator/unprec_s_cprec_t_wilson_schr2link_space.out.xml, hadron/propagator/unprec_wilson.out.xml, hadron/propagator/unprec_zolo_nef.out.xml, hadron/qqq/qqdiquark.out.xml, hadron/qqq/qqq.out.xml, hadron/qqqNucNuc/qqqNucNuc.out.xml, hadron/seqsource/seqsource-baryon.out.xml, hadron/seqsource/seqsource-derivmeson.out.xml, hadron/seqsource/seqsource-meson.out.xml, hadron/seqsource/seqsource-photon.out.xml, hadron/sink_smear/sink-deriv.out.xml, hadron/sink_smear/sink-displace.out.xml, hadron/sink_smear/sink_smearing.out.xml, hadron/static_light/static_light.dat.xml, hadron/static_light/static_light.out.xml, hadron/static_light/static_light_pot.dat.xml, hadron/static_light/static_light_pot.out.xml, hadron/stoch_baryon/stoch_baryon.out.xml, hadron/stoch_meson/stoch_meson.out.xml: Updated regressions yet again for new tags in PrintGeom group. 2008-06-04 23:08 edwards * tests/chroma/hadron/stoch_group_baryon/stoch_group_baryon.out.xml: Updated. 2008-06-04 22:47 edwards * tests/chroma/hadron/noisy_building_blocks/: nbb.dat_0.xml, nbb.dat_1.xml: Don't need these. 2008-06-04 22:46 edwards * tests/chroma/hadron/noisy_building_blocks/: nbb.dat_0.xml, nbb.dat_1.xml, nbb.ini.xml, nbb.out.xml: Updated regressions. 2008-06-04 22:23 edwards * tests/chroma/: eig/eigbnds.out.xml, eig/ritz_Hw-v1.out.xml, gfix/coulgauge/coulgauge.out.xml, glue/fuzwilp/fuzwilp.out.xml, glue/gaugestate/gaugestate.out.xml, glue/qtop_naive/qtop_naive.out.xml, glue/wilslp/wilslp.out.xml, hadron/bar3ptfn/bar3ptfn.out.xml, hadron/building_blocks/bb-baryon.out.xml, hadron/building_blocks/bb-deriv.out.xml, hadron/building_blocks/bb-meson.out.xml, hadron/fermstate/fermstate.out.xml, hadron/hadron_contract/meson_2pt/meson_2pt.out.xml, hadron/hadron_contract/stoch_condensates/stoch_condensates.out.xml, hadron/hadspec/hadspec.out.xml, hadron/make_source/dilute.out.xml, hadron/make_source/make_source.out.xml, hadron/make_source/source-deriv.out.xml, hadron/make_source/source-displace.out.xml, hadron/mesonspec/mesonspec.out.xml, hadron/mres/mres.out.xml, hadron/noisy_building_blocks/nbb.out.xml: Updated regressions for new PrintInfo group. 2008-06-04 16:30 edwards * tests/: chroma/eig/eigbnds.out.xml, chroma/eig/ritz_Hw-v1.out.xml, chroma/gfix/coulgauge/coulgauge.out.xml, chroma/glue/fuzwilp/fuzwilp.out.xml, chroma/glue/gaugestate/gaugestate.out.xml, chroma/glue/qtop_naive/qtop_naive.out.xml, chroma/glue/wilslp/wilslp.out.xml, chroma/hadron/bar3ptfn/bar3ptfn.out.xml, chroma/hadron/building_blocks/bb-baryon.out.xml, chroma/hadron/building_blocks/bb-deriv.out.xml, chroma/hadron/building_blocks/bb-meson.out.xml, chroma/hadron/fermstate/fermstate.out.xml, chroma/hadron/hadron_contract/meson_2pt/meson_2pt.out.xml, chroma/hadron/hadron_contract/stoch_condensates/stoch_condensates.out.xml, chroma/hadron/hadspec/hadspec.out.xml, chroma/hadron/make_source/dilute.out.xml, chroma/hadron/make_source/make_source.out.xml, chroma/hadron/make_source/source-deriv.out.xml, chroma/hadron/make_source/source-displace.out.xml, chroma/hadron/mesonspec/mesonspec.out.xml, chroma/hadron/mres/mres.out.xml, chroma/hadron/noisy_building_blocks/nbb.out.xml, chroma/hadron/propagator/eo3dprec_s_cprec_t_clover.out.xml, chroma/hadron/propagator/eo3dprec_s_cprec_t_wilson.out.xml, chroma/hadron/propagator/iluprec_s_cprec_t_clover.bicgstab.out.xml, chroma/hadron/propagator/iluprec_s_cprec_t_clover.out.xml, chroma/hadron/propagator/iluprec_s_cprec_t_clover_schr1link.out.xml, chroma/hadron/propagator/iluprec_s_cprec_t_clover_schr2link.out.xml, chroma/hadron/propagator/iluprec_s_cprec_t_clover_schr2link_space.out.xml, chroma/hadron/propagator/iluprec_s_cprec_t_wilson.out.xml, chroma/hadron/propagator/iluprec_s_cprec_t_wilson_schr1link.out.xml, chroma/hadron/propagator/iluprec_s_cprec_t_wilson_schr2link.out.xml, chroma/hadron/propagator/iluprec_s_cprec_t_wilson_schr2link_space.out.xml, chroma/hadron/propagator/prec_clover-stout3d.bicgstab.out.xml, chroma/hadron/propagator/prec_clover-stout3d.mr.out.xml, chroma/hadron/propagator/prec_clover-stout3d.out.xml, chroma/hadron/propagator/prec_clover.eigcg.out.xml, chroma/hadron/propagator/prec_clover.out.xml, chroma/hadron/propagator/prec_dwf.eigcg.out.xml, chroma/hadron/propagator/prec_dwf.out.xml, chroma/hadron/propagator/prec_ht_contfrac5d.out.xml, chroma/hadron/propagator/prec_ovext.out.xml, chroma/hadron/propagator/prec_ovlap_contfrac5d.out.xml, chroma/hadron/propagator/prec_parwilson.out.xml, chroma/hadron/propagator/prec_wilson-smearing.out.xml, chroma/hadron/propagator/prec_wilson-twisted.out.xml, chroma/hadron/propagator/prec_wilson.2+2.out.xml, chroma/hadron/propagator/prec_wilson.ferm.out.xml, chroma/hadron/propagator/prec_wilson.out.xml, chroma/hadron/propagator/prec_zolo_nef.out.xml, chroma/hadron/propagator/unprec-ovlap-zolo4d.out.xml, chroma/hadron/propagator/unprec-zolo-ev-multi.out.xml, chroma/hadron/propagator/unprec_clover.out.xml, chroma/hadron/propagator/unprec_dwftransf.out.xml, chroma/hadron/propagator/unprec_graphene.out.xml, chroma/hadron/propagator/unprec_hamberwu.out.xml, chroma/hadron/propagator/unprec_ovext.out.xml, chroma/hadron/propagator/unprec_ovlap_contfrac5d.out.xml, chroma/hadron/propagator/unprec_s_cprec_t_wilson.out.xml, chroma/hadron/propagator/unprec_s_cprec_t_wilson_schr1link.out.xml, chroma/hadron/propagator/unprec_s_cprec_t_wilson_schr2link.out.xml, chroma/hadron/propagator/unprec_s_cprec_t_wilson_schr2link_space.out.xml, chroma/hadron/propagator/unprec_wilson.out.xml, chroma/hadron/propagator/unprec_zolo_nef.out.xml, chroma/hadron/qqq/qqdiquark.out.xml, chroma/hadron/qqq/qqq.out.xml, chroma/hadron/qqqNucNuc/qqqNucNuc.out.xml, chroma/hadron/seqsource/seqsource-baryon.out.xml, chroma/hadron/seqsource/seqsource-derivmeson.out.xml, chroma/hadron/seqsource/seqsource-meson.out.xml, chroma/hadron/seqsource/seqsource-photon.out.xml, chroma/hadron/sink_smear/sink-deriv.out.xml, chroma/hadron/sink_smear/sink-displace.out.xml, chroma/hadron/sink_smear/sink_smearing.out.xml, chroma/hadron/static_light/static_light.out.xml, chroma/hadron/static_light/static_light_pot.out.xml, chroma/hadron/stoch_baryon/stoch_baryon.out.xml, chroma/hadron/stoch_group_baryon/stoch_group_baryon.out.xml, hmc/hmc.prec_wilson.out.xml, hmc/hmc.prec_wilson_repro.out.xml, purgaug/purgaug.2+2.1loop.out.xml, purgaug/purgaug.2+2.out.xml, purgaug/purgaug.out.xml, purgaug/purgaug.sfnonpt.out.xml, spectrum_s/spectrum_s.out.xml: Updated regressions to have the new PrintInfo group. 2008-06-04 10:44 kostas * lib/meas/sources/rndz2wall_source_const.cc: fixed handling of random seed to have the same behavior as dilutedZN source 2008-06-03 23:24 edwards * tests/chroma/hadron/stoch_group_meson/: stoch_group_meson.ini.pl, stoch_group_meson.ini.xml, stoch_group_meson.out.xml: Changed input arguments for annihilation operator. 2008-06-03 23:19 edwards * lib/meas/inline/hadron/inline_stoch_group_meson_w.h: Added creation and annihilation operator contraction controls. 2008-06-03 23:17 edwards * lib/Makefile.am: Added enum_mesonop_io.{h,cc}. 2008-06-03 23:16 edwards * lib/io/enum_io/: enum_mesonop_io.cc, enum_mesonop_io.h: Enums for type of contraction for meson stochastic operators. 2008-06-03 23:16 edwards * lib/meas/inline/hadron/inline_stoch_group_meson_w.cc: Added creation and annihilation operator contraction controls. 2008-06-03 23:15 edwards * tests/chroma/hadron/stoch_group_meson/: stoch_group_meson.ini.pl, stoch_group_meson.ini.xml, stoch_group_meson.out.xml: New creation and annihilation op enums. 2008-06-02 12:33 bjoo * tests/t_leapfrog/: regres.pl, t_leapfrog.prec_1flav_wilson-readcoeffs.ini.xml, t_leapfrog.prec_1flav_wilson-readcoeffs.log.xml: Added regression for reading coefficient from the file 2008-06-02 12:18 bjoo * mainprogs/tests/t_remez.cc: t_remez.cc now handles -ve powers in numerator and denominator too 2008-06-02 12:18 bjoo * lib/update/molecdyn/monomial/read_rat_approx.cc: read_rat_approx.cc 2008-06-02 12:17 bjoo * tests/t_remez.ini.xml: Temporary add of input file for new t_remez. Will make proper regressions at some point 2008-06-02 11:44 bjoo * mainprogs/tests/t_remez.cc: t_remez changed to compute arbitrary Remez coeffs 2008-06-02 11:44 bjoo * lib/Makefile.am: Makefile.am updated 2008-06-02 11:42 bjoo * lib/update/molecdyn/monomial/: rat_approx_aggregate.cc, read_rat_approx.cc, read_rat_approx.h: Added readers for rat approx 2008-05-30 14:53 edwards * lib/util/info/proginfo.cc: Added basePrecision to output. 2008-05-30 14:50 edwards * configure: Induced changes 2008-05-30 14:47 edwards * aclocal.m4: Induced changes 2008-05-30 14:45 edwards * lib/update/molecdyn/monomial/two_flavor_ratio_conv_conv_monomial_w.h: Removed getX. 2008-05-30 14:44 edwards * aclocal.m4: Induced changes 2008-05-30 14:42 edwards * NEWS: Info on 3.30.0 2008-05-30 14:40 edwards * configure.ac: Changed to 3.30.0 2008-05-28 23:58 edwards * lib/update/molecdyn/monomial/: eoprec_constdet_two_flavor_monomial_w.h, two_flavor_monomial_w.h: Got rid of getX. This saves a "state" construction. 2008-05-28 23:29 edwards * lib/update/molecdyn/monomial/two_flavor_monomial5d_w.h: Fixed missing contruction of getPhi() fields. Now appears to work. Removed getX. 2008-05-28 23:28 edwards * lib/actions/ferm/invert/invcg2_array.cc: Added property size check on linop and rhs. 2008-05-28 23:28 edwards * lib/update/molecdyn/predictor/zero_guess_predictor.h: Added error check. 2008-05-28 23:27 edwards * tests/t_leapfrog/: t_leapfrog.prec_contfrac.ini.xml, t_leapfrog.prec_contfrac.log.xml, t_leapfrog.prec_dwf.ini.xml, t_leapfrog.prec_dwf.log.xml, t_leapfrog.unprec_dwf.ini.xml, t_leapfrog.unprec_dwf.log.xml: Updated regression output for the case where the 2 flavor 5D monomial no longer has a Pauli-Villars term implicitly subtracted out. 2008-05-27 13:40 edwards * tests/t_leapfrog/: t_leapfrog.parwilson_minimal_norm_2nd_order_integrator_mts.ini.xml, t_leapfrog.parwilson_minimal_norm_2nd_order_integrator_mts.log.xml, t_leapfrog.parwilson_minimal_norm_2nd_order_qpq_integrator_mts.ini.xml, t_leapfrog.parwilson_minimal_norm_2nd_order_qpq_integrator_mts.log.xml, t_leapfrog.parwilson_pqp_integrator_mts.ini.xml, t_leapfrog.parwilson_pqp_integrator_mts.log.xml, t_leapfrog.prec_1flav_dwf.ini.xml, t_leapfrog.prec_1flav_dwf.log.xml, t_leapfrog.prec_hasenbusch5d_dwf.log.xml, t_leapfrog.prec_hasenbusch_wilson.ini.xml, t_leapfrog.prec_hasenbusch_wilson.log.xml, t_leapfrog.unprec_hasenbusch5d_dwf.ini.xml, t_leapfrog.unprec_hasenbusch5d_dwf.log.xml, t_leapfrog.unprec_hasenbusch_wilson.ini.xml, t_leapfrog.unprec_hasenbusch_wilson.log.xml: Updated to use new structure of monomials. 2008-05-24 01:14 edwards * tests/t_leapfrog/t_leapfrog.prec_1flav_dwf.ini.xml: Fixed tag. 2008-05-24 01:10 edwards * tests/t_leapfrog/t_leapfrog.prec_1flav_wilson.ini.xml: Updated to new monomial structure. 2008-05-24 00:58 edwards * tests/t_leapfrog/: t_leapfrog.prec_1flav_dwf.ini.xml, t_leapfrog.prec_1flav_wilson.ini.xml: New input tags. 2008-05-24 00:41 edwards * tests/t_leapfrog/t_leapfrog.prec_hasenbusch5d_dwf.ini.xml: Switched form of input. 2008-05-24 00:29 edwards * lib/update/molecdyn/monomial/: one_flavor_rat_monomial_params_w.cc, one_flavor_ratio_rat_conv_monomial_params_w.cc, one_flavor_ratio_rat_rat_monomial_params_w.cc, two_flavor_ratio_conv_conv_monomial_params_w.cc, two_flavor_ratio_conv_rat_monomial_params_w.cc: Changed Numerator and Denominator to Action and PrecAction as per picky requests. 2008-05-23 17:34 edwards * tests/t_leapfrog/: t_leapfrog.prec_1flav_dwf.ini.xml, t_leapfrog.prec_1flav_dwf.log.xml, t_leapfrog.prec_1flav_wilson.ini.xml, t_leapfrog.prec_1flav_wilson.log.xml: New monomial input structure. 2008-05-23 17:32 edwards * lib/Makefile.am: Added new monomials. 2008-05-23 17:31 edwards * lib/update/molecdyn/monomial/: comp_approx.cc, comp_approx.h, eoprec_constdet_one_flavor_rat_monomial5d_w.cc, eoprec_constdet_one_flavor_rat_monomial5d_w.h, eoprec_constdet_one_flavor_rat_monomial_w.cc, eoprec_constdet_one_flavor_rat_monomial_w.h, eoprec_constdet_one_flavor_ratio_rat_conv_monomial5d_w.cc, eoprec_constdet_one_flavor_ratio_rat_conv_monomial5d_w.h, eoprec_constdet_one_flavor_ratio_rat_conv_monomial_w.cc, eoprec_constdet_one_flavor_ratio_rat_conv_monomial_w.h, eoprec_constdet_one_flavor_ratio_rat_rat_monomial5d_w.cc, eoprec_constdet_one_flavor_ratio_rat_rat_monomial5d_w.h, eoprec_constdet_one_flavor_ratio_rat_rat_monomial_w.cc, eoprec_constdet_one_flavor_ratio_rat_rat_monomial_w.h, eoprec_constdet_two_flavor_hasenbusch_monomial5d_w.cc, eoprec_constdet_two_flavor_hasenbusch_monomial5d_w.h, eoprec_constdet_two_flavor_hasenbusch_monomial_w.cc, eoprec_constdet_two_flavor_hasenbusch_monomial_w.h, eoprec_constdet_two_flavor_monomial5d_w.h, eoprec_constdet_two_flavor_monomial_w.cc, eoprec_constdet_two_flavor_monomial_w.h, eoprec_constdet_two_flavor_polynomial_monomial_w.cc, eoprec_constdet_two_flavor_polynomial_monomial_w.h, eoprec_constdet_two_flavor_polyprec_monomial_w.cc, eoprec_constdet_two_flavor_polyprec_monomial_w.h, eoprec_constdet_two_flavor_ratio_conv_conv_monomial5d_w.cc, eoprec_constdet_two_flavor_ratio_conv_conv_monomial5d_w.h, eoprec_constdet_two_flavor_ratio_conv_conv_monomial_w.cc, eoprec_constdet_two_flavor_ratio_conv_conv_monomial_w.h, eoprec_constdet_two_flavor_ratio_conv_rat_monomial5d_w.cc, eoprec_constdet_two_flavor_ratio_conv_rat_monomial5d_w.h, eoprec_constdet_two_flavor_ratio_conv_rat_monomial_w.cc, eoprec_constdet_two_flavor_ratio_conv_rat_monomial_w.h, genapprox.cc, genapprox.h, monomial_aggregate_w.cc, monomial_w.h, one_flavor_rat_monomial5d_params_w.cc, one_flavor_rat_monomial5d_params_w.h, one_flavor_rat_monomial5d_w.h, one_flavor_rat_monomial_params_w.cc, one_flavor_rat_monomial_params_w.h, one_flavor_rat_monomial_w.h, one_flavor_ratio_rat_conv_monomial5d_w.h, one_flavor_ratio_rat_conv_monomial_params_w.cc, one_flavor_ratio_rat_conv_monomial_params_w.h, one_flavor_ratio_rat_conv_monomial_w.h, one_flavor_ratio_rat_rat_monomial5d_w.h, one_flavor_ratio_rat_rat_monomial_params_w.cc, one_flavor_ratio_rat_rat_monomial_params_w.h, one_flavor_ratio_rat_rat_monomial_w.h, rat_approx.h, rat_approx_aggregate.cc, rat_approx_aggregate.h, rat_approx_factory.h, remez_rat_approx.cc, remez_rat_approx.h, two_flavor_hasenbusch_monomial5d_w.h, two_flavor_hasenbusch_monomial_params_w.cc, two_flavor_hasenbusch_monomial_params_w.h, two_flavor_hasenbusch_monomial_w.h, two_flavor_monomial5d_w.h, two_flavor_monomial_w.h, two_flavor_ratio_conv_conv_monomial5d_w.h, two_flavor_ratio_conv_conv_monomial_params_w.cc, two_flavor_ratio_conv_conv_monomial_params_w.h, two_flavor_ratio_conv_conv_monomial_w.h, two_flavor_ratio_conv_rat_monomial5d_w.h, two_flavor_ratio_conv_rat_monomial_params_w.cc, two_flavor_ratio_conv_rat_monomial_params_w.h, two_flavor_ratio_conv_rat_monomial_w.h, unprec_one_flavor_rat_monomial5d_w.cc, unprec_one_flavor_rat_monomial5d_w.h, unprec_one_flavor_rat_monomial_w.cc, unprec_one_flavor_rat_monomial_w.h, unprec_one_flavor_ratio_rat_conv_monomial5d_w.cc, unprec_one_flavor_ratio_rat_conv_monomial5d_w.h, unprec_one_flavor_ratio_rat_conv_monomial_w.cc, unprec_one_flavor_ratio_rat_conv_monomial_w.h, unprec_one_flavor_ratio_rat_rat_monomial5d_w.cc, unprec_one_flavor_ratio_rat_rat_monomial5d_w.h, unprec_one_flavor_ratio_rat_rat_monomial_w.cc, unprec_one_flavor_ratio_rat_rat_monomial_w.h, unprec_two_flavor_hasenbusch_monomial5d_w.cc, unprec_two_flavor_hasenbusch_monomial5d_w.h, unprec_two_flavor_hasenbusch_monomial_w.cc, unprec_two_flavor_hasenbusch_monomial_w.h, unprec_two_flavor_monomial5d_w.h, unprec_two_flavor_monomial_w.h, unprec_two_flavor_ratio_conv_conv_monomial5d_w.cc, unprec_two_flavor_ratio_conv_conv_monomial5d_w.h, unprec_two_flavor_ratio_conv_conv_monomial_w.cc, unprec_two_flavor_ratio_conv_conv_monomial_w.h, unprec_two_flavor_ratio_conv_rat_monomial5d_w.cc, unprec_two_flavor_ratio_conv_rat_monomial5d_w.h, unprec_two_flavor_ratio_conv_rat_monomial_w.cc, unprec_two_flavor_ratio_conv_rat_monomial_w.h: Major overhaul of monomial structure which are now of the form pseudoferm term tag A=M^dag*M chi*A_1^-1*chi two_flavor chi*M_2*A_1^-1*M_2^dag*chi two_flavor_ratio_conv_conv chi*R(A_2)*A_1^-1*R(A_2)*chi two_flavor_ratio_conv_rat chi*R(A_1)*chi one_flavor_rat chi*M_2*R(A_1)*M_2^dag*chi one_flavor_ratio_rat_conv chi*R(A_2)*R(A_1)*R(M_2)*chi one_flavor_ratio_rat_rat This structure exists for both 4D and 5D variants. Not all are implemented at the level of the derivatives, but can be. The 5D monomials no longer have an explicit reference to the Pauli-Villars (PV) linOpPV. That linOp is now added as an appropriate separate monomial or the M_2 term. This is handled simply by giving a DWF-like fermact with a quark mass of 1, or it might require a kind of PV fermact in the case of some of the more esoteric 5D actions. 2008-05-23 14:56 bjoo * tests/t_leapfrog/t_leapfrog.metric.xml: Loosened this criterion 1 order of magnitude 2008-05-23 14:40 edwards * lib/update/molecdyn/monomial/: fixed_random_ferm_monomial.cc, fixed_random_ferm_monomial.h: Removed exposed "name" from next to the registration function. 2008-05-23 14:39 edwards * lib/update/molecdyn/monomial/: central_tprec_logdet_tt_monomial_w.cc, central_tprec_logdet_tt_monomial_w.h, eoprec_logdet_ee_monomial_w.cc, eoprec_logdet_ee_monomial_w.h, eoprec_logdet_two_flavor_monomial_w.cc, eoprec_logdet_two_flavor_monomial_w.h: Removed the exposed "name" from the registration. Now private to the cc file. 2008-05-23 07:37 tag chroma3-29-2 2008-05-23 07:37 bjoo * lib/actions/ferm/: fermacts/clover_fermact_params_w.cc, fermacts/clover_fermact_params_w.h, linop/clover_term_qdp_w.cc: Added zero energy to clover logdet 2008-05-22 14:50 caubin * lib/meas/hadron/: delta_2pt_w.cc, delta_2pt_w.h: Added parity choice when doing minimal necessary contractions. 2008-05-22 11:13 edwards * NEWS: Changed to 3.29.2 2008-05-22 11:10 edwards * aclocal.m4, configure: Induced changes 2008-05-22 11:09 edwards * configure.ac: Changed to 3.29.2 2008-05-22 11:07 edwards * README: Now updated. 2008-05-22 11:05 edwards * README: Updates. 2008-05-22 10:58 edwards * NEWS: Info on 3.29.1 2008-05-22 10:51 edwards * aclocal.m4: Induced changes 2008-05-22 10:49 edwards * configure.ac: Changed to 3.29.1 2008-05-22 10:33 edwards * aclocal.m4: Induced changes 2008-05-21 13:07 bjoo * aclocal.m4, configure, lib/actions/gauge/gaugeacts/aniso_sym_gaugeact_params.cc, lib/actions/gauge/gaugeacts/aniso_sym_gaugeact_params.h, lib/actions/gauge/gaugeacts/aniso_sym_spatial_gaugeact.cc, lib/actions/gauge/gaugeacts/aniso_sym_temporal_gaugeact.cc, lib/update/molecdyn/hamiltonian/exact_hamiltonian.h, lib/update/molecdyn/monomial/eoprec_constdet_two_flavor_monomial_w.h, lib/update/molecdyn/monomial/one_flavor_rat_monomial_w.h, tests/regres.pl, tests/chroma/io/usqcd_ddpairs_prop/usqcd_prop_readwrite_internal.metric.xml, tests/t_leapfrog/t_leapfrog.metric.xml: Added some precision related tweaks into some monomials and the HMC 2008-05-21 11:54 bjoo * tests/t_leapfrog/: t_leapfrog.metric.xml, t_leapfrog.prec_contfrac.ini.xml, t_leapfrog.prec_contfrac.log.xml: Changed metric to check individual KE and PE changes rather than overall change. Sometimes the overall change is only good to 1 sig fig - this is bad 2008-05-21 11:15 bjoo * tests/t_leapfrog/: regres.pl, t_leapfrog.2+2_gaugeact.log.xml, t_leapfrog.aniso_spectrum.log.xml, t_leapfrog.aniso_sym_spatial.log.xml, t_leapfrog.aniso_sym_spatial_plus_temporal.log.xml, t_leapfrog.aniso_sym_temporal.log.xml, t_leapfrog.fixed_X_action_stout.log.xml, t_leapfrog.lw.sfnonpt.log.xml, t_leapfrog.metric.xml, t_leapfrog.parwilson_minimal_norm_2nd_order_integrator_mts.log.xml, t_leapfrog.parwilson_minimal_norm_2nd_order_qpq_integrator_mts.log.xml, t_leapfrog.parwilson_pqp_integrator_mts.log.xml, t_leapfrog.prec_1flav_wilson.log.xml, t_leapfrog.prec_2flav_clover.log.xml, t_leapfrog.prec_2flav_clover.sfnonpt.log.xml, t_leapfrog.prec_2flav_clover_ee_oo.log.xml, t_leapfrog.prec_clover_stout.log.xml, t_leapfrog.prec_contfrac.log.xml, t_leapfrog.prec_dwf.log.xml, t_leapfrog.prec_hasenbusch5d_dwf.log.xml, t_leapfrog.prec_hasenbusch_wilson.log.xml, t_leapfrog.prec_parwilson.log.xml, t_leapfrog.prec_slrc.log.xml, t_leapfrog.prec_slrc.sfnonpt.log.xml, t_leapfrog.prec_wilson.bicgstab.log.xml, t_leapfrog.prec_wilson.log.xml, t_leapfrog.rect_gaugeact.log.xml, t_leapfrog.rect_gaugeact_1.log.xml, t_leapfrog.rect_gaugeact_aniso.log.xml, t_leapfrog.rect_gaugeact_c1t0.log.xml, t_leapfrog.rect_gaugeact_omit2linkT.log.xml, t_leapfrog.two_plaq_spatial_gaugeact.log.xml, t_leapfrog.unprec_clover.log.xml, t_leapfrog.unprec_dwf.log.xml, t_leapfrog.unprec_hasenbusch5d_dwf.log.xml, t_leapfrog.unprec_hasenbusch_wilson.log.xml, t_leapfrog.unprec_wilson.log.xml, t_leapfrog.wilson_gaugeact.log.xml, t_leapfrog.wilson_gaugeact_aniso_mom.log.xml, t_leapfrog.wilson_gaugeact_st.log.xml: Regenerated the regressions, and added a metric that checks on Delta H. This is so that we can check on changes to the energy calc routines - that need to change the deltaH-s invariant 2008-05-21 10:09 bjoo * mainprogs/tests/t_leapfrog.cc: Added a DeltaH in the log for t_leafprog. 2008-05-20 14:23 kostas * lib/meas/hadron/barspinmat_w.cc: add fix to FRANKLIN gcc compiler bug 2008-05-20 14:18 kostas * lib/meas/hadron/: delta_2pt_w.cc, delta_2pt_w.h: added minimal set of contractions 2008-05-16 17:53 edwards * lib/Makefile.am: Added inline_rotate_spin_w.cc 2008-05-16 17:50 edwards * lib/meas/inline/hadron/: inline_hadron_aggregate.cc, inline_rotate_spin_w.cc, inline_rotate_spin_w.h: Added a spin rotation. 2008-05-14 15:24 bjoo * tests/regres.pl: Oops 2008-05-14 15:24 bjoo * aclocal.m4, configure, lib/central_tprec_linop.h, lib/meas/hadron/hadron_contract.cc, lib/update/molecdyn/hamiltonian/exact_hamiltonian.cc, lib/update/molecdyn/monomial/two_flavor_hasenbusch_monomial5d_w.h, mainprogs/tests/t_clover.cc, tests/regres.pl: Added a bunch of include typeinfos so that bad cast would work with gcc-4 2008-05-14 10:16 kostas * tests/chroma/hadron/qqqNucNuc/: qqqNucNuc_all.ini.xml, qqqNucNuc_all.out.xml, qqqNucNuc_vector.ini.xml, qqqNucNuc_vector.out.xml: added input and output for new features 2008-05-14 10:08 kostas * lib/meas/inline/hadron/inline_qqqNucNuc_w.cc: added doubly charmed baryons 2008-05-14 08:32 bjoo * tests/chroma/hadron/qqqNucNuc/qqqNucNuc.out.xml: New output containing the doVectorMeson tag put in by Kostas 2008-05-14 00:13 edwards * lib/update/molecdyn/monomial/: force_monitors.cc, force_monitors.h, remez_coeff.h, remez_gmp.h, remez_stub.h: Changed doxygen comments. 2008-05-13 22:52 kostas * lib/meas/inline/hadron/inline_qqqNucNuc_w.h: added flag for verctor mesons 2008-05-13 22:51 kostas * lib/meas/inline/hadron/inline_qqqNucNuc_w.cc: fixed a bug 2008-05-13 22:39 kostas * lib/meas/inline/hadron/inline_qqqNucNuc_w.cc: added flag for doing vector mesons 2008-05-13 17:59 kostas * lib/meas/inline/hadron/inline_qqqNucNuc_w.cc: fixed bugs 2008-05-13 17:53 kostas * lib/meas/inline/hadron/inline_qqqNucNuc_w.cc: added charmed mesons 2008-05-13 17:31 kostas * lib/meas/inline/hadron/inline_qqqNucNuc_w.cc: added charmed baryons 2008-05-12 15:03 bjoo * AUTHORS, COPYING, INSTALL, Makefile.am, NEWS, README, TODO, acinclude.m4, aclocal.m4, chroma-config.in, configure, configure.ac: Added stuff 2008-05-12 14:57 bjoo * mainprogs/tests/: Makefile.am, t_clover.cc: Clover Operator Benchmarker added 2008-05-12 11:00 bjoo * lib/actions/ferm/linop/eoprec_clover_linop_ssecombined_w.cc: Tried to rearrange clover operator() pulling out the preposting of receives to the operator level and before the clover applies 2008-05-12 10:50 bjoo * other_libs/sse_wilson_dslash/: include/sse_dslash.h, lib/sse_su3dslash_32bit_parscalar.c, lib/sse_su3dslash_32bit_scalar.c, lib/sse_su3dslash_64bit_parscalar.c, lib/sse_su3dslash_64bit_scalar.c: Exposed preposting of receives 2008-05-08 23:58 kostas * aclocal.m4, configure, lib/Makefile.am, lib/meas/hadron/simple_hadron_operator_w.cc, lib/meas/hadron/simple_hadron_operator_w.h, lib/meas/inline/hadron/inline_stoch_hadron_w.cc: added new codes 2008-05-08 04:35 edwards * lib/update/molecdyn/monomial/two_flavor_hasenbusch_monomial5d_w.h: Changed a comment - we are not directly using pauli-villars here. 2008-05-07 10:44 tag chroma3-29-1 2008-05-07 10:44 bjoo * lib/actions/ferm/qprop/mdwf_solver.cc: Changed logging option 2008-05-06 21:12 bjoo * lib/actions/ferm/: fermacts/clover_fermact_params_w.cc, fermacts/clover_fermact_params_w.h, linop/central_tprec_nospin_utils.h, linop/eo3dprec_s_cprec_t_clover_linop_w.cc, linop/eo3dprec_s_cprec_t_clover_linop_w.h, linop/eo3dprec_s_cprec_t_wilson_linop_w.cc, linop/eo3dprec_s_cprec_t_wilson_linop_w.h, linop/iluprec_s_cprec_t_clover_linop_w.cc, linop/iluprec_s_cprec_t_clover_linop_w.h, linop/iluprec_s_cprec_t_wilson_linop_w.h, linop/iluprec_s_cprec_t_wilsonlike_linop_w.h, linop/unprec_s_cprec_t_wilson_linop_w.cc, linop/unprec_s_cprec_t_wilson_linop_w.h: Added support for temp prec. MaxNorm trick 2008-05-06 09:25 tag chroma3-29-0 2008-05-06 09:25 bjoo * NEWS, configure, lib/actions/ferm/qprop/mdwf_solver.cc, lib/actions/ferm/qprop/mdwf_solver.h: Makefile.in 2008-05-06 09:24 bjoo * configure.ac: configure.ac next 2008-05-06 09:23 bjoo * lib/Makefile.am: Makefiles.ams first 2008-05-06 07:45 bjoo * lib/: Makefile.am, actions/ferm/qprop/mdwf_solver.h: Fixed a Makefile.am oops 2008-05-05 16:12 bjoo * lib/actions/ferm/qprop/mdwf_solver.h: Added Flopcounting to MDWF Solver 2008-05-05 15:33 bjoo * NEWS, chroma-config.in, configure, lib/chroma_config_internal.h.in: Added ShamirDWF interface to MDWF Library from MIT. Double Prec only until mixed precision issues are resolved 2008-05-05 15:27 bjoo * configure.ac, lib/Makefile.am, mainprogs/main/Makefile.am, mainprogs/tests/Makefile.am: MDWF Changes 2008-05-05 15:18 bjoo * lib/actions/ferm/qprop/mdwf_solver.h: This seems to work. I am committing only the double precision variant just now, modulo sorting out why the mixed versions don't work 2008-05-05 15:11 bjoo * lib/actions/ferm/qprop/dwf_qpropt_w.h: dwf_qpropt_w.h changed to allow new MDWF solver for DWF Props 2008-05-04 10:21 bjoo * tests/chroma/io/usqcd_ddpairs_prop/usqcd_prop_readwrite_internal.metric.xml: Loosened comparison criteria on this test from 1e-8 to 1e-6 2008-05-02 19:53 tag chroma3-28-5 2008-05-02 19:53 bjoo * NEWS, tests/chroma/io/usqcd_ddpairs_prop/usqcd_prop_readwrite_internal.ini.xml, tests/chroma/io/usqcd_ddpairs_prop/usqcd_prop_readwrite_internal.metric.xml, tests/chroma/io/usqcd_ddpairs_prop/usqcd_prop_readwrite_internal.out.xml: Updated PROP reader writer internal test 2008-05-02 17:34 kostas * lib/meas/inline/hadron/: inline_stoch_hadron_w.cc, inline_stoch_hadron_w.h: next step 2008-05-02 17:10 bjoo * NEWS: NEWS chroma now needs qdp1-26-0 to build 2008-05-02 17:03 bjoo * NEWS, lib/meas/inline/io/inline_usqcd_read_ddpairs_prop.cc, lib/meas/inline/io/inline_usqcd_read_ddpairs_prop.h, lib/meas/inline/io/inline_usqcd_write_ddpairs_prop.cc, tests/regres.pl: OK! This is version 3.28.5 2008-05-02 17:01 bjoo * tests/chroma/io/usqcd_ddpairs_prop/regres.pl: Makefile 2008-05-02 16:58 bjoo * configure.ac, configure: Phased commits 1 2008-05-02 16:41 bjoo * tests/chroma/io/usqcd_ddpairs_prop/: README, usqcd_ddpairs_prop_read_foreign.ini.xml, usqcd_ddpairs_prop_read_inheader.ini.xml, usqcd_prop_readwrite_internal.ini.xml, usqcd_prop_readwrite_internal.metric.xml, usqcd_prop_readwrite_internal.out.xml: Added testfiles 2008-05-01 15:32 bjoo * lib/meas/inline/io/: inline_usqcd_read_ddpairs_prop.cc, inline_usqcd_read_ddpairs_prop.h, inline_usqcd_write_ddpairs_prop.cc, inline_usqcd_write_ddpairs_prop.h: Reader and Writer now both do something. Writing and Reading back seems OK for prop, but source is corrupted. 2008-04-29 16:21 kostas * lib/meas/inline/hadron/: inline_qqqNucNuc_w.cc, inline_stoch_hadron_w.cc: slight fixes... 2008-04-29 08:24 edwards * tests/chroma/hadron/stoch_group_baryon/: make_baryon_ops.ini.pl, make_baryon_ops.ini.xml, make_baryon_ops.out.xml, stoch_group_baryon.out.xml: Now have a whole chain. Can run chroma for stoch_group_baryon to make its output, then run make_baryon_ops on the result. 2008-04-29 08:20 edwards * tests/chroma/hadron/stoch_group_baryon/: Nucleon_G1g_1, Nucleon_elem, Single_Site, Singly_Displaced, make_baryon_ops.ini.pl, make_baryon_ops.ini.xml, stoch_group_baryon.ini.pl, stoch_group_baryon.ini.xml, stoch_group_baryon.out.xml: New input and output tests. 2008-04-29 07:51 edwards * lib/meas/inline/hadron/inline_stoch_group_baryon_w.cc: Indented. 2008-04-29 07:46 edwards * tests/chroma/hadron/stoch_group_baryon/: create_chroma_xml_small_eo.pl, make_baryon_ops.ini.pl, stoch_group_baryon.ini.pl, stoch_group_baryon.new.ini.xml: New input file setup. 2008-04-29 07:46 edwards * mainprogs/make_ops/: Makefile, make_make_ops_input.pl, make_ops.cc: Moved make_ops/make_ops.cc to main/make_baryon_ops.cc Moved the input files to chroma/tests/chroma/hadron/stoch_group_baryon. 2008-04-29 07:45 edwards * mainprogs/main/make_baryon_ops.cc: Moved chroma/mainprogs/make_ops/make_ops.cc to this make_baryon_ops.cc 2008-04-29 07:44 edwards * mainprogs/main/Makefile.am: Added make_baryon_ops. 2008-04-29 07:34 edwards * lib/meas/inline/hadron/make_inline_stoch_group_baryon_input.pl: Moved to the chroma/tests/chroma/hadron/stoch_group_baryon dir. 2008-04-29 07:34 edwards * lib/meas/inline/hadron/inline_stoch_group_meson_w.cc: Removed some unused diagnostic stuff. 2008-04-28 16:23 bjoo * lib/meas/inline/io/: inline_usqcd_read_ddpairs_prop.cc, inline_usqcd_read_ddpairs_prop.h: Seems to read the DD Pairs 2008-04-26 13:03 kostas * lib/meas/inline/hadron/inline_stoch_hadron_w.cc: small fix 2008-04-25 15:27 bjoo * lib/meas/inline/io/: inline_usqcd_read_ddpairs_prop.cc, inline_usqcd_write_ddpairs_prop.cc: Stuff 2008-04-25 14:30 bjoo * lib/meas/inline/io/: inline_usqcd_write_ddpairs_prop.cc, inline_usqcd_write_ddpairs_prop.h: Shell for Prop Writers (they don't actually work yet) 2008-04-25 14:29 bjoo * lib/: Makefile.am, meas/inline/io/inline_io_aggregate.cc: Added shell for QIO Writer 2008-04-25 14:08 bjoo * lib/Makefile.am, lib/meas/inline/io/inline_io_aggregate.cc, lib/meas/inline/io/inline_usqcd_read_ddpairs_prop.cc, lib/meas/inline/io/inline_usqcd_read_ddpairs_prop.h, other_libs/qdp-lapack/configure, other_libs/sse_wilson_dslash/aclocal.m4, other_libs/sse_wilson_dslash/configure: Initial shell measurement to read USQCD DD Pair Propagator Format 2008-04-25 01:46 edwards * lib/meas/inline/hadron/inline_stoch_group_meson_w.cc, mainprogs/main/make_meson_ops.cc: Switched to general array of displacements for right quark, and none for the left quark. 2008-04-25 01:45 edwards * tests/chroma/hadron/stoch_group_meson/: make_meson_ops.ini.pl, make_meson_ops.ini.xml, make_meson_ops.out.xml, stoch_group_meson.ini.pl, stoch_group_meson.ini.xml, stoch_group_meson.out.xml, test_meson, two_displace: Switched to general displacements for right quark and none on the first quark. 2008-04-24 23:56 edwards * lib/meas/inline/hadron/inline_stoch_group_meson_w.cc: Put a gamma_5 on the source 0 quarks. This allows us to compute eta^dag_1 * [some gamma and U] * gamma_5 * eta_0 and similarly for the annihilation operator. 2008-04-24 23:55 edwards * tests/chroma/hadron/stoch_group_meson/stoch_group_meson.out.xml: New elemental op output. 2008-04-24 23:40 kostas * lib/meas/inline/hadron/inline_stoch_hadron_w.cc: little more progress 2008-04-24 22:52 edwards * mainprogs/main/make_meson_ops.cc: Fixed how dilutions are checked. In the meson case, the left and right of the source correspond to the right and left quarks of the sink. 2008-04-24 22:51 edwards * tests/chroma/hadron/stoch_group_meson/: create_chroma_xml_small_eo.pl, make_meson_ops.ini.pl, make_meson_ops.ini.xml, make_meson_ops.out.xml, stoch_group_meson.ini.pl, stoch_group_meson.out.xml, test_meson: Fixed input and output for make_meson_ops. Now seems to run. Renamed perl generator file to the make_meson_ops.ini.pl name. 2008-04-24 11:57 jbulava * lib/meas/inline/hadron/make_inline_stoch_group_baryon_input.pl: added perl script to generate input for inline_stoch_group_baryon_w.cc 2008-04-24 10:26 jbulava * lib/meas/inline/hadron/inline_stoch_group_baryon_w.cc, other_libs/qdp-lapack/aclocal.m4: Updated inline_stoch_group_baryon 2008-04-24 10:17 edwards * lib/meas/: glue/qnaive.cc, glue/qnaive.h, inline/glue/inline_glue_aggregate.h, inline/glue/inline_qnaive.cc, inline/glue/inline_qnaive.h: Added author names and cvs tags. 2008-04-24 10:14 edwards * lib/meas/inline/glue/inline_qnaive.cc: Added author notice. 2008-04-24 10:13 edwards * lib/meas/glue/qnaive.cc: Added an author notice. 2008-04-24 10:10 edwards * tests/chroma/glue/qtop_naive/qtop_naive.out.xml: New regression output. 2008-04-24 10:07 edwards * aclocal.m4, configure: Induced changes 2008-04-24 10:07 edwards * lib/Makefile.am: Added qtop_naive and inline_qtop_naive. 2008-04-24 10:07 edwards * lib/meas/inline/glue/: inline_glue_aggregate.cc, inline_glue_aggregate.h, inline_qnaive.cc, inline_qnaive.h: New qtop_naive codes. 2008-04-24 10:07 edwards * lib/meas/inline/hadron/inline_stoch_group_meson_w.cc: Small changes in comments. 2008-04-24 10:06 edwards * tests/chroma/hadron/stoch_group_meson/: create_chroma_xml_small_eo.pl, make_meson_ops.ini.pl, make_meson_ops.ini.xml, make_meson_ops.out.xml, stoch_group_meson.ini.xml, stoch_group_meson.out.xml, test_meson, two_displace: New test input/output.. 2008-04-24 10:04 edwards * tests/chroma/glue/qtop_naive/: qtop_naive.metric.xml, regres.pl: Added qtop_naive regression. 2008-04-24 10:04 edwards * tests/regres.pl: Added qtop_naive 2008-04-24 09:55 edwards * lib/meas/glue/: qnaive.cc, qnaive.h: New version of qnaive from C. Hagen. 2008-04-24 09:45 edwards * tests/chroma/glue/qtop_naive/qtop_naive.ini.xml: First version. 2008-04-24 01:41 kostas * lib/meas/inline/hadron/inline_stoch_hadron_w.cc: [no log message] 2008-04-24 01:34 kostas * lib/meas/inline/hadron/inline_stoch_hadron_w.cc: [no log message] 2008-04-24 01:20 kostas * aclocal.m4, configure, lib/Makefile.am, lib/meas/inline/hadron/inline_hadron_aggregate.cc, lib/meas/inline/hadron/inline_stoch_hadron_w.cc, lib/meas/inline/hadron/inline_stoch_hadron_w.h: added stoch_hadron to the compilation chain 2008-04-23 23:13 edwards * mainprogs/main/: Makefile.am, make_meson_ops.cc: Added make_meson_ops.cc 2008-04-23 16:05 bjoo * other_libs/qdp-lapack/configure: Automake remade this? 2008-04-23 15:14 bjoo * other_libs/sse_wilson_dslash/tests/: timeDslash.cc, timeDslash3D.cc: No way to call a QMP barrier from the scalar code. Replaced with an Internal::globalSum 2008-04-23 14:10 bjoo * other_libs/sse_wilson_dslash/: lib/sse_su3dslash_32bit_parscalar_3d.c, tests/testvol.h, tests/timeDslash.cc, tests/timeDslash3D.cc: Diddled around some. Added some new options, that have yet to make it into the configure. 2008-04-23 09:43 edwards * tests/: chroma/glue/wilslp/wilslp.out.xml, purgaug/purgaug.2+2.1loop.out.xml, purgaug/purgaug.2+2.out.xml, purgaug/purgaug.out.xml, purgaug/purgaug.sfnonpt.out.xml: Updated. 2008-04-23 00:06 kostas * lib/meas/inline/hadron/inline_stoch_baryon_w.cc: added BinaryWriter 2008-04-22 23:56 edwards * tests/chroma/hadron/stoch_group_meson/: stoch_group_meson.out.xml, two_displace: Shortened elemental op file. 2008-04-22 23:54 edwards * tests/chroma/hadron/stoch_group_meson/: stoch_group_meson.out.xml, two_displace: Use correct form of elemental op file. 2008-04-22 22:58 edwards * tests/chroma/hadron/stoch_group_meson/stoch_group_meson.out.xml: New output 2008-04-22 22:57 edwards * lib/meas/inline/hadron/inline_stoch_group_meson_w.cc: Got rid of permutations/orderings. Seems to run. Possibly correct. The creation op = eta^dag*eta and the annih op = psi^dag*psi. 2008-04-22 00:32 kostas * other_libs/qdp-lapack/: configure, configure.ac, include/qdp-lapack_config_internal.h.in, include/qdp-lapack_numerical.h: autoconf stuff 2008-04-21 23:50 kostas * other_libs/qdp-lapack/lib/: eigpcg.c, Complex.c, IncrEigpcg.c, numerical.c, ortho.c, restart_X.c, wtime.c: [no log message] 2008-04-21 15:13 bjoo * other_libs/sse_wilson_dslash/: aclocal.m4, configure, lib/sse_su3dslash_32bit_parscalar.c, tests/testvol.h, tests/timeDslash.cc: Cray type stuff 2008-04-20 23:20 edwards * lib/meas/inline/hadron/inline_stoch_group_meson_w.cc: Removed some code that isn't used. 2008-04-20 23:19 edwards * lib/meas/inline/hadron/inline_stoch_group_meson_w.cc: First version. It runs, but is not correct yet. 2008-04-20 23:19 edwards * lib/meas/hadron/: dilution_quark_source_const_w.cc, dilution_quark_source_const_w.h, dilution_scheme.h, dilution_scheme_aggregate.cc: Did some indenting so I could figure out what this code is doing... 2008-04-20 23:18 edwards * tests/chroma/hadron/stoch_group_meson/: create_chroma_xml_small_eo.pl, regres.pl, stoch_group_meson.ini.xml, stoch_group_meson.out.xml, two_displace: First version. 2008-04-20 12:03 edwards * other_libs/qdp-lapack/configure: Induced changes. 2008-04-20 12:00 edwards * aclocal.m4, configure: Induced changes 2008-04-20 12:00 edwards * lib/Makefile.am: Added inline_stoch_group_meson_w.* 2008-04-20 11:59 edwards * lib/meas/inline/hadron/: inline_hadron_aggregate.cc, inline_stoch_group_meson_w.cc, inline_stoch_group_meson_w.h: Copied over the current stoch_group_baryon onto the stoch_group_meson, and renamed all the appropriate bits to be 2 quarks. 2008-04-20 11:46 edwards * lib/meas/inline/hadron/inline_stoch_group_baryon_w.h: Simplified the include files - less dependencies. 2008-04-18 23:13 edwards * lib/meas/inline/glue/inline_wilslp.cc: Added printing of Mesplq before and after creategaugestate call. 2008-04-18 23:12 edwards * lib/actions/ferm/fermstates/stout_fermstate_params.cc: Added test if there are both orthog_dir and smear_in_this_dirP flag turned on. 2008-04-17 23:16 kostas * other_libs/qdp-lapack/lib/: eigpcg.c, numerical.c: ... 2008-04-17 16:15 kostas * other_libs/qdp-lapack/lib/numerical.c: commented out the CDOTC since it crashes the CRAY... 2008-04-17 01:22 kostas * other_libs/qdp-lapack/: include/qdp-lapack_numerical.h, lib/eigpcg.c, lib/numerical.c: some more fixes and improvements 2008-04-15 23:24 kostas * other_libs/qdp-lapack/: include/qdp-lapack_numerical.h, lib/numerical.c: fixed global sum 2008-04-15 22:09 kostas * other_libs/qdp-lapack/AUTHORS: .. 2008-04-15 22:00 kostas * aclocal.m4, configure, configure.ac, lib/chroma_config_internal.h.in: autoconf stuff for enabling optimized eigcg 2008-04-15 10:24 kostas * other_libs/qdp-lapack/lib/: IncrEigpcg.c, IncrEigpcg_stub.c, numerical.c: more QMP stuff: 2008-04-15 10:17 kostas * other_libs/qdp-lapack/: acinclude.m4, aclocal.m4, configure, configure.ac, include/qdp-lapack_numerical.h, lib/Makefile.am: autoconf stuff 2008-04-13 17:07 bjoo * other_libs/sse_wilson_dslash/: configure, configure.ac, include/sse_config_internal.h.in, lib/dispatch_parscalar.c, lib/dispatch_scalar.c, tests/testDslash3D.cc, tests/testDslashFull.cc, tests/testvol.h, tests/timeDslash.cc, tests/timeDslash3D.cc: Added openMP support. Thanks Xu 2008-04-09 23:16 kostas * lib/actions/ferm/invert/inv_eigcg2.cc: [no log message] 2008-04-09 23:01 kostas * lib/actions/ferm/invert/: inv_eigcg2.cc, inv_eigcg2.h, syssolver_linop_eigcg_qdp.cc: optimization of the QDP eigcg 2008-04-09 09:11 kostas * lib/actions/ferm/invert/syssolver_linop_eigcg_qdp.cc: yet an other restart bug.. 2008-04-09 08:39 kostas * lib/actions/ferm/invert/syssolver_linop_eigcg_qdp.cc: fixed restarting 2008-04-09 00:59 kostas * lib/actions/ferm/invert/syssolver_linop_eigcg_qdp.cc: fix 2008-04-09 00:49 kostas * lib/actions/ferm/invert/: inv_eigcg2.cc, inv_eigcg2.h, syssolver_eigcg_params.cc, syssolver_eigcg_params.h, syssolver_linop_OPTeigcg.cc, syssolver_linop_eigcg.h, syssolver_linop_eigcg_array.cc, syssolver_linop_eigcg_qdp.cc: made OPTeigcg and eigcg params to be the same. improved a bit the old eigcg 2008-04-07 15:19 jbulava * mainprogs/make_ops/: Makefile, make_ops.cc: Fixed bug in make_ops.cc 2008-04-07 01:04 edwards * lib/actions/ferm/invert/syssolver_linop_eigcg.cc: Moved to syssolver_linop_eig_qdp.cc 2008-04-07 00:58 edwards * lib/actions/ferm/invert/: syssolver_linop_aggregate.cc, syssolver_linop_eigcg.h, syssolver_linop_eigcg_qdp.cc, syssolver_linop_eigcg_qdp.h: Added syssolver_linop_eigcg_qdp.{h,cc}, and syssolver_linop_eigcg.h which is now a wrapper for the register of the appropriate optimized inverter. 2008-04-07 00:57 edwards * lib/Makefile.am: Added syssolver_linop_eigcg_qdp.{h,cc} and a wrapper for the syssolver_linop_eigcg.h 2008-04-05 15:04 edwards * lib/actions/ferm/invert/: multi_syssolver_linop_mr.h, multi_syssolver_mdagm_cg.h, multi_syssolver_mdagm_cg_array.h, syssolver_linop_OPTeigcg.h, syssolver_linop_bicgstab.h, syssolver_linop_cg.h, syssolver_linop_cg_array.h, syssolver_linop_cg_timing.h, syssolver_linop_eigcg.h, syssolver_linop_eigcg_array.h, syssolver_linop_mr.h, syssolver_mdagm_bicgstab.h, syssolver_mdagm_cg.h, syssolver_mdagm_cg_array.h, syssolver_mdagm_cg_timing.h, syssolver_mdagm_mr.h, syssolver_polyprec_cg.h: Removed the "name" from the export in the Env. It's not needed. Just the register function is the relevant bit. 2008-04-05 15:04 edwards * configure: Induced changes. 2008-04-05 15:02 edwards * aclocal.m4: Induced changes 2008-04-05 15:02 edwards * configure.ac, lib/Makefile.am, lib/chroma_config_internal.h.in: Added configuration control for compiling lapack related routines. 2008-04-05 14:59 edwards * other_libs/qdp-lapack/lib/: IncrEigpcg_stub.c, Makefile.am: Added IncrEigpcg_stub.c 2008-04-05 09:45 edwards * lib/actions/ferm/invert/syssolver_linop_OPTeigcg.cc: Replace a LatticeFermion with the template type "T". 2008-04-05 00:10 kostas * lib/actions/ferm/invert/syssolver_linop_OPTeigcg.cc: fixed merging problem... 2008-04-05 00:07 kostas * lib/actions/ferm/invert/syssolver_linop_OPTeigcg.cc: andreas's fixes 2008-04-04 23:54 kostas * other_libs/qdp-lapack/include/: qdp-lapack_eigpcg.h, qdp-lapack_numerical.h, qdp-lapack_wtime.h: andreas's fixes 2008-04-04 23:53 kostas * other_libs/qdp-lapack/lib/: eigpcg.c, numerical.c: andrea's fixes 2008-04-04 23:42 kostas * other_libs/qdp-lapack/lib/IncrEigpcg.c: [no log message] 2008-04-03 22:30 kostas * other_libs/qdp-lapack/lib/eigpcg.c: ... 2008-04-03 22:23 kostas * lib/actions/ferm/invert/syssolver_linop_OPTeigcg.cc: fixed one last bug 2008-04-03 11:58 kostas * lib/Makefile.am, lib/actions/ferm/invert/containers.h, lib/actions/ferm/invert/syssolver_OPTeigcg_params.cc, lib/actions/ferm/invert/syssolver_OPTeigcg_params.h, lib/actions/ferm/invert/syssolver_linop_OPTeigcg.cc, lib/actions/ferm/invert/syssolver_linop_OPTeigcg.h, other_libs/qdp-lapack/lib/IncrEigpcg.c: still debugging 2008-04-03 00:27 kostas * lib/actions/ferm/invert/syssolver_linop_OPTeigcg.cc: ...still working on it... 2008-04-02 23:07 kostas * other_libs/qdp-lapack/lib/: cdotcsub.f, eigpcg.c: fixed yet on other bug 2008-04-02 22:22 kostas * lib/actions/ferm/invert/syssolver_eigcg_params.cc: ... little bug fixed 2008-04-02 13:55 kostas * other_libs/qdp-lapack/: configure, configure.ac, include/qdp-lapack_wtime.h, lib/Makefile.am, lib/cdotcsub.f, lib/wtime.c, lib/zdotcsub.f: added missing source and autoconf for fortran 2008-04-02 13:54 kostas * lib/actions/ferm/invert/syssolver_linop_OPTeigcg.cc: now compiles and links 2008-04-02 13:05 kostas * lib/actions/ferm/invert/: syssolver_linop_OPTeigcg.cc, syssolver_linop_aggregate.cc: liked it in.. 2008-04-02 12:45 kostas * lib/actions/ferm/invert/syssolver_linop_OPTeigcg.cc: compiles now... 2008-04-02 08:24 kostas * lib/actions/ferm/invert/syssolver_linop_OPTeigcg.cc: fixed an other error... still not compiling 2008-04-02 00:08 kostas * lib/actions/ferm/invert/syssolver_linop_OPTeigcg.cc: fixed several arguments of the call to IncrEigcg including the MatrixMatvec. Now it fails to complie the MatrixMatvec routine if I comment in the IncrEigpcg 2008-04-01 23:16 kostas * lib/actions/ferm/invert/syssolver_linop_OPTeigcg.cc: fixed the float but the MatrixMatvec does not work... Commented out the IncrEigCG 2008-04-01 22:55 kostas * lib/actions/ferm/invert/containers.h: Evals are floats 2008-04-01 22:45 kostas * other_libs/qdp-lapack/lib/: IncrEigpcg.c, IncrEigpcg_epsRes.c, Makefile.am: added the -DUSE_QMP flag to automake and QMP_fprintf 2008-04-01 17:18 kostas * other_libs/qdp-lapack/include/: qdp-lapack_Complex.h, qdp-lapack_IncrEigpcg.h, qdp-lapack_eigpcg.h: fixed 2008-04-01 17:16 kostas * lib/actions/ferm/invert/: syssolver_OPTeigcg_params.cc, syssolver_OPTeigcg_params.h, syssolver_linop_OPTeigcg.cc, syssolver_linop_OPTeigcg.h: OPT eigCG linged in 2008-04-01 15:59 kostas * other_libs/qdp-lapack/: include/Makefile.am, include/qdp-lapack_Complex.h, include/qdp-lapack_IncrEigpcg.h, include/qdp-lapack_eigpcg.h, include/qdp-lapack_fortran_lapack.h, include/qdp-lapack_numerical.h, include/qdp-lapack_numerical_private.h, include/qdp-lapack_ortho.h, include/qdp-lapack_restart_X.h, lib/Complex.c, lib/Makefile.am, lib/eigpcg.c, lib/restart_X.c: builds 2008-04-01 15:22 kostas * other_libs/qdp-lapack/lib/: Complex.c, IncrEigpcg.c, IncrEigpcg_epsRes.c, Makefile.am, eigpcg.c, numerical.c, ortho.c, restart_X.c: eigcg 2008-04-01 00:02 kostas * lib/actions/ferm/invert/: syssolver_linop_OPTeigcg.cc, syssolver_linop_OPTeigcg.h: added some improvements for subsets 2008-03-30 23:22 kostas * lib/actions/ferm/invert/: containers.h, syssolver_OPTeigcg_params.cc, syssolver_OPTeigcg_params.h, syssolver_linop_OPTeigcg.cc, syssolver_linop_OPTeigcg.h: started the linking with the optimized EigCG 2008-03-29 15:15 mcneile * lib/actions/ferm/linop/improvement_terms_s.h: Added new prototype for naik links with coefficient as argument. 2008-03-29 01:02 kostas * lib/actions/ferm/invert/syssolver_eigcg_params.cc: little bug... 2008-03-29 00:00 kostas * lib/meas/inline/hadron/inline_qqqNucNuc_w.cc: added vector messons 2008-03-28 23:41 kostas * lib/actions/ferm/invert/: syssolver_eigcg_params.cc, syssolver_eigcg_params.h, syssolver_linop_eigcg.cc, syssolver_linop_eigcg_array.cc: added multiple restart 2008-03-28 23:40 kostas * lib/meas/hadron/: qqbar_w.cc, qqbar_w.h: added vector mesons 2008-03-27 06:37 mcneile * docs/readme_hisq: Updated "documentation". 2008-03-27 06:19 mcneile * lib/actions/ferm/linop/naik_term_s.cc: There is a version of the code that takes a parameter for the Naik term. Umm too much cut and pasty. 2008-03-27 06:17 mcneile * lib/actions/ferm/fermacts/hisq_fermact_s.cc: I have added the mass dependent correction to Naik term as a parameter. 2008-03-26 10:24 mcneile * tests/spectrum_s/: regres.pl, spectrum_s_HISQ.ini.xml, spectrum_s_HISQ.out.xml: These are the regression tests for the HISQ inverter. The ode has been checked against Eduardos's on a small lattice. 2008-03-25 07:16 mcneile * tests/spectrum_s/: spectrum_s.ini.xml, spectrum_s.out.xml: The format of the files has slighty changed so that we can choose ASQTAS or HISQ at run time. This will also allow me to put the HISQ code into the regression framework. 2008-03-25 07:09 mcneile * lib/meas/hadron/stag_scalars_s.cc: Eric has updated the comments on the operators. 2008-03-25 07:02 mcneile * mainprogs/main/spectrum_s.cc: I have added the linkage hack so that we can choose between HISQ/ASTAD at run time. UMM, no doubt this means we can't compile on the QCDOC anymore. 2008-03-25 06:58 mcneile * lib/meas/inline/hadron_s/: inline_spectrum_s.cc, inline_spectrum_s.h: The code has been updated so that the either HISQ or ASQTAD can be choosen. 2008-03-25 06:53 mcneile * lib/actions/ferm/fermacts/: hisq_fermact_params_s.cc, hisq_fermact_params_s.h: Added parameter for the dispersion relation. 2008-03-25 06:51 mcneile * lib/actions/ferm/fermacts/hisq_fermact_s.cc: I have added a hook for the epsilon term in the Naik term. This is not working yet. 2008-03-25 06:46 mcneile * lib/actions/ferm/invert/: invcg1.cc, invcg1.h: I have added code to do a minimum number of iterations. The defaults should be sensible. This is nedded for charm. 2008-03-25 06:43 mcneile * lib/actions/ferm/invert/: syssolver_cg_params.cc, syssolver_cg_params.h: Added a minimum interation counter (default zero). This is useful for charm (honestly). 2008-03-18 12:59 edwards * lib/meas/inline/io/qio_read_obj_funcmap.cc: Added RitzPairs. 2008-03-17 11:27 edwards * tests/chroma/hadron/propagator/prec_clover.eigcg.out.xml: Updated regression. 2008-03-17 11:22 edwards * lib/meas/: inline/hadron/inline_stoch_group_meson_w.cc, inline/hadron/inline_stoch_group_meson_w.h, hadron/meson_spec_2pt_w.cc, hadron/meson_spec_2pt_w.h: First version. 2008-03-11 20:48 bjoo * other_libs/sse_wilson_dslash/tests/: timeDecomp.cc, timeDecomp.h, time_decomp.cc: An extra test to check on prefetching - not much use but want make check to be happy 2008-03-11 17:37 mcneile * mainprogs/tests/: DATA_v3, t_propagator_s.cc: I have cleaned up the file and program. 2008-03-11 17:02 mcneile * mainprogs/tests/: DATA_v3, t_propagator_s.cc: These use the new factory function for the improved staggered actions. 2008-03-11 16:57 mcneile * lib/actions/ferm/fermacts/fermacts_aggregate_s.cc: I have added HISQ to this. 2008-03-11 15:45 bjoo * other_libs/sse_wilson_dslash/: include/dispatch_parscalar.h, lib/shift_tables_parscalar.c, lib/sse_su3dslash_32bit_parscalar.c, tests/Makefile.am, tests/testvol.h, tests/timeDslash.cc: Added prefetching to 2cb 4d dslash single prec only. Appears to help on 7n on up to 32 cpus and we need to check on other architectures 2008-03-11 15:42 jbulava * lib/meas/inline/hadron/inline_stoch_group_baryon_w.cc, mainprogs/make_ops/make_ops.cc: make_ops.cc now outputs one file for each t0. Minor changes to inline_stoch_group_baryon 2008-03-10 13:32 bjoo * lib/: Makefile.am, actions/ferm/invert/minvcg2.cc, actions/ferm/invert/minvcg2.h, actions/ferm/invert/multi_syssolver_mdagm_cg.h, actions/ferm/qprop/quarkprop4_w.cc: Added MinvCG2 2008-03-07 11:47 jbulava * lib/meas/hadron/dilution_quark_source_const_w.cc, lib/meas/hadron/dilution_quark_source_const_w.h, lib/meas/hadron/dilution_scheme.h, lib/meas/inline/hadron/inline_stoch_group_baryon_w.cc, lib/meas/inline/hadron/inline_stoch_group_baryon_w.h, mainprogs/make_ops/Makefile, mainprogs/make_ops/make_ops.cc: Handled the kappa/mass ambiquitity in prop headers 2008-03-07 10:37 edwards * tests/chroma/hadron/propagator/prec_clover.eigcg.ini.xml: Use the correct params for eigcg to actually do something. 2008-03-05 16:52 bjoo * tests/spectrum_s/DATA_v3: Input data for t_propagator_s 2008-03-05 16:50 bjoo * mainprogs/tests/t_propagator_s.cc: Moving t_propagator_s to using factories 2008-03-05 16:12 bjoo * mainprogs/tests/t_propagator_s.cc: Cursory modifications for Craig 2008-03-05 14:45 bjoo * other_libs/sse_wilson_dslash/: lib/shift_tables_parscalar.c, lib/shift_tables_parscalar_3d.c, lib/shift_tables_scalar.c, lib/shift_tables_scalar_3d.c, lib/sse_su3dslash_32bit_parscalar.c, lib/sse_su3dslash_32bit_parscalar_3d.c, lib/sse_su3dslash_32bit_scalar.c, lib/sse_su3dslash_32bit_scalar_3d.c, lib/sse_su3dslash_64bit_parscalar.c, lib/sse_su3dslash_64bit_parscalar_3d.c, lib/sse_su3dslash_64bit_scalar.c, lib/sse_su3dslash_64bit_scalar_3d.c, tests/testDslash3D.cc, tests/testDslashFull.cc: Scalar and parscalar single and double both work, and I can change the order of working through the coordinates when setting up the site table 2008-03-04 17:38 tag chroma3-28-4 2008-03-04 17:38 bjoo * lib/actions/ferm/linop/: lwldslash_3d_sse_w.cc, lwldslash_array_sse_w.cc, lwldslash_w_sse.cc: Added changes for new dslash. Now needs qdp1-25-2 at least 2008-03-04 17:09 bjoo * other_libs/sse_wilson_dslash/: tests/testDslash3D.cc, tests/timeDslash3D.cc, include/sse_dslash_3d.h, lib/sse_su3dslash_32bit_parscalar_3d.c: Fixed a prototype leftover from testing 2008-03-04 16:50 bjoo * other_libs/sse_wilson_dslash/: configure, configure.ac, include/shift_tables_parscalar.h, include/shift_tables_scalar.h, include/sse_dslash.h, include/sse_dslash_3d.h, lib/shift_tables_parscalar.c, lib/shift_tables_parscalar_3d.c, lib/shift_tables_scalar.c, lib/shift_tables_scalar_3d.c, lib/sse_su3dslash_32bit_parscalar.c, lib/sse_su3dslash_32bit_parscalar_3d.c, lib/sse_su3dslash_32bit_scalar.c, lib/sse_su3dslash_32bit_scalar_3d.c, lib/sse_su3dslash_64bit_parscalar.c, lib/sse_su3dslash_64bit_parscalar_3d.c, lib/sse_su3dslash_64bit_scalar.c, lib/sse_su3dslash_64bit_scalar_3d.c, tests/t_dslash.cc, tests/t_dslash_3d.cc, tests/testDslash3D.cc, tests/testDslashFull.cc, tests/testvol.h, tests/timeDslash.cc, tests/timeDslash3D.cc, tests/time_dslash.cc, tests/time_dslash_3d.cc, tests/scripts/do_all.sh, tests/scripts/test_all.sh, tests/scripts/test_all_3d.sh: Passes many tests. Works entirely off site tables 2008-02-24 06:34 mcneile * lib/meas/inline/hadron_s/inline_spectrum_s.h: More stuff for binary writers 2008-02-24 06:32 mcneile * lib/meas/inline/hadron_s/inline_spectrum_s.cc: Use binary writers to dump intermediate results. 2008-02-24 06:29 mcneile * lib/meas/hadron/: loops_s.h, ks_local_loops.cc, ks_local_loops.h: Added binary write of intermediate results to reduce performance problems with XML. 2008-02-19 16:11 edwards * lib/actions/ferm/fermstates/extfield_fermstate_w.cc: Removed old comment and ifdef guard. No functional change. 2008-02-19 11:23 tag chroma3-28-3 2008-02-19 11:23 bjoo * configure: Induced Changes 2008-02-19 11:22 bjoo * configure.ac: Updated configure.ac to 3.28.3 2008-02-19 11:21 bjoo * lib/util/gauge/stout_utils.cc: Added decimal points to the corner cases. 2008-02-19 10:19 tag chroma3-28-2 2008-02-19 10:19 bjoo * configure, configure.ac: Bumped version number and associated changes 2008-02-19 10:00 bjoo * chroma-config.in, configure, configure.ac: Fixed Chroma config maybe 2008-02-18 15:45 kostas * lib/actions/ferm/fermstates/: extfield_aggregate_w.cc, extfield_aggregate_w.h: patch up B field and shift E field 2008-02-17 07:09 mcneile * docs/readme_hisq: Some notes on the HISQ inverter. 2008-02-17 06:42 mcneile * lib/actions/ferm/fermacts/hisq_fermact_s.cc: REmoved include file that I use for debugging. 2008-02-16 11:51 mcneile * lib/actions/ferm/fermacts/hisq_fermact_s.cc: This version of the code has been successfully tested against Eduardo's HISQ inverter. Staggered phases suck. They are enough to drive one to drink or into that nasty DWF business (m_res, L5, etc) I sm still note sure that the antreperoiduc boundary conditions are in correctly. 2008-02-16 11:21 mcneile * lib/actions/ferm/fermacts/hisq_fermact_s.cc: This version has debug hooks in it. 2008-02-09 14:33 edwards * tests/chroma/hadron_s/propagator/: klein_gordon.ini.xml, klein_gordon.out.xml: Increased precision. 2008-02-06 13:55 edwards * lib/meas/inline/schrfun/inline_sfpcac_w.cc: Fixed name of XML group in case xml_file is non-empty. 2008-02-04 14:23 kostas * lib/actions/ferm/fermstates/: extfield_aggregate_w.cc, extfield_aggregate_w.h: added linear electric field 2008-02-01 18:10 jbulava * lib/meas/inline/hadron/inline_stoch_group_baryon_w.cc, mainprogs/make_ops/make_ops.cc: More changes to i/o. 2008-02-01 12:01 tag chroma3-28-1 2008-02-01 12:01 edwards * aclocal.m4, configure: Induced changes 2008-02-01 12:01 edwards * NEWS: Info on 3.28.1. 2008-02-01 11:58 edwards * configure.ac: Changed to 3.28.1 2008-02-01 11:54 edwards * tests/chroma/smear/link_smear/link_smear.metric.xml: Removed unused metric cases. 2008-01-31 09:55 edwards * tests/purgaug/: purgaug.2+2.ini.xml, purgaug.2+2.out.xml: Updated. 2008-01-31 09:48 edwards * tests/chroma/: smear/link_smear/link_smear.out.xml, eig/eigbnds.out.xml: Updated. 2008-01-31 09:45 edwards * tests/chroma/hadron/propagator/prec_wilson-smearing.out.xml: Updated regression. 2008-01-30 23:36 edwards * tests/t_leapfrog/t_leapfrog.2+2_gaugeact.log.xml: Updated to new input form. 2008-01-30 23:35 edwards * tests/t_leapfrog/t_leapfrog.2+2_gaugeact.ini.xml: Fixed input for this type of gaugeact. 2008-01-30 23:31 jbulava * lib/meas/inline/hadron/inline_stoch_group_baryon_w.cc, mainprogs/make_ops/make_make_ops_input.pl, mainprogs/make_ops/make_ops.cc: make_ops.cc runs. small changes to inline_stoch code for timing. 2008-01-30 13:29 bjoo * lib/meas/inline/eig/: inline_eigbnds.cc, inline_eigbnds.h: Added separate hi residua to eigenbounds parameters. Should be backwards compatible 2008-01-30 02:24 kostas * lib/actions/ferm/invert/inv_eigcg2.cc: switched on the OLD inv_eigCG ... seems to work... something is wrong with the new one... 2008-01-29 18:09 jbulava * lib/meas/inline/hadron/inline_stoch_group_baryon_w.cc, mainprogs/make_ops/make_ops.cc: More work on make_ops.cc. Added more info to elem. op. files. 2008-01-28 17:55 jbulava * lib/meas/hadron/dilution_quark_source_const_w.h, lib/meas/hadron/dilution_scheme.h, lib/meas/inline/hadron/inline_stoch_group_baryon_w.cc, mainprogs/make_ops/make_ops.cc: Added some more info to operator lime files. More progress on make_ops. 2008-01-25 17:23 edwards * mainprogs/tests/t_stout_state.cc: Changed to use the stout_smear within the lib/util/gauge/stout_utils group of functions. 2008-01-25 17:22 edwards * lib/: chroma_config_internal.h.in, util/gauge/gauge.h, util/gauge/stout_utils.cc, util/gauge/stout_utils.h: Added a stout_smear function to stout_utils that's just a wrapper over the usual functions. This is to provide the single link functionality to those main programs that seemed to want to test use it. 2008-01-24 15:47 jbulava * lib/meas/: hadron/dilution_quark_source_const_w.cc, hadron/dilution_quark_source_const_w.h, hadron/dilution_scheme.h, inline/hadron/inline_stoch_group_baryon_v3_w.cc, inline/hadron/inline_stoch_group_baryon_v3_w.h, inline/hadron/inline_stoch_group_baryon_w.cc: Included more sanity checks. 2008-01-24 10:18 edwards * lib/actions/ferm/linop/: dslash_array_w.h, dslash_w.h, lwldslash_array_sse_old_w.cc, lwldslash_array_sse_old_w.h, lwldslash_w_sse_old.cc, lwldslash_w_sse_old.h: Removed the old sse codes and switches. 2008-01-24 09:51 edwards * tests/chroma/smear/link_smear/: link_smear.ini.xml, link_smear.out.xml: Removed OLD case. Regenerated output. 2008-01-24 09:50 edwards * lib/: Makefile.am, meas/smear/link_smearing_aggregate.cc, meas/smear/smear.h, meas/smear/stout_link_smearing.cc, meas/smear/stout_link_smearing.h, meas/smear/stout_link_smearing_old.cc, meas/smear/stout_link_smearing_old.h, meas/smear/stout_smear.cc, meas/smear/stout_smear.h, meas/smear/stout_smear_old.cc, meas/smear/stout_smear_old.h: Removed stout_smear* and stout_link_smearing_old.* . The malfeature where the rho in stout_smearing has a sign flip has been removed. The stout_link_smearing now goes through the lib/util/gauge/stout_utils routines. 2008-01-23 17:25 edwards * mainprogs/: main/Makefile.am, tests/Makefile.am: Removed intel_sse_old stuff. 2008-01-23 17:24 edwards * aclocal.m4, configure: Induced changes 2008-01-23 17:24 edwards * AUTHORS, COPYING: aclocal.m4 2008-01-23 17:19 edwards * configure.ac, lib/Makefile.am: Removed old intel_sse code and options. 2008-01-23 14:04 bjoo * lib/meas/smear/stout_smear.cc: Took - sign back out of stout smear 2008-01-23 13:23 bjoo * lib/update/molecdyn/monomial/: one_flavor_rat_monomial_w.h, unprec_one_flavor_rat_monomial_w.cc, unprec_one_flavor_rat_monomial_w.h: Monomial changes for temp preconditioning 2008-01-23 10:44 edwards * tests/purgaug/regres.pl: Added wilson_coarse_fine_1loop test. 2008-01-23 10:43 edwards * tests/purgaug/: purgaug.2+2.1loop.ini.xml, purgaug.2+2.1loop.metric.xml, purgaug.2+2.1loop.out.xml, purgaug.2+2.ini.xml, purgaug.2+2.out.xml: Copied 2+2 to a 1-loop version and changed the original to use general coefficients. 2008-01-23 10:41 edwards * lib/actions/gauge/gaugeacts/gaugeacts_aggregate.cc: Added wilson_coarse_fine_1loop 2008-01-23 10:39 edwards * lib/actions/gauge/gaugeacts/wilson_coarse_fine_gaugeact.cc: Fix. 2008-01-23 10:36 edwards * lib/actions/gauge/gaugeacts/: wilson_coarse_fine_1loop_gaugeact.cc, wilson_coarse_fine_1loop_gaugeact.h, wilson_coarse_fine_gaugeact.cc, wilson_coarse_fine_gaugeact.h: Copied wilson_coarse_fine_gaugeact to a 1loop version and changed the original to use general (non-pertubative) coefficients. 2008-01-23 10:35 edwards * lib/Makefile.am: Copy wilson_coarse_fine_gaugeact to a wilson_coarse_fine_1loop_gaugeact and changed the original to use geneneral (non-perturbative) coefficients. 2008-01-22 22:25 edwards * NEWS: Added missing info on 3.27.1 2008-01-22 16:23 jbulava * lib/meas/: hadron/dilution_quark_source_const_w.cc, inline/hadron/inline_stoch_group_baryon_w.cc: Fixed some run-time errors. 2008-01-22 11:43 tag chroma3-28-0 2008-01-22 11:43 edwards * tests/chroma/hadron/propagator/: prec_wilson.2+2.ini.xml, prec_wilson.2+2.out.xml: Updated a bit. 2008-01-22 11:33 edwards * NEWS: Info on 3.28.0 2008-01-22 10:51 edwards * tests/t_leapfrog/t_leapfrog.2+2_gaugeact.log.xml: Updated output. 2008-01-21 17:24 edwards * aclocal.m4, configure: Induced changes 2008-01-21 17:22 edwards * configure.ac: Change mpirun runner to a 6n_mpirun. 2008-01-21 17:21 edwards * scripts/test_runners/6n_mpirun_rsh_runner.sh.in: New 6n runner (taken from 7n). Identical runner environment between 6n and 7n now. 2008-01-21 16:45 edwards * tests/t_leapfrog/: regres.pl, t_leapfrog.2+2_gaugeact.ini.xml, t_leapfrog.2+2_gaugeact.log.xml, t_leapfrog.2+2_gaugeact.metric.xml, t_leapfrog.plaq_cf_gaugeact.ini.xml, t_leapfrog.plaq_cf_gaugeact.log.xml, t_leapfrog.plaq_cf_gaugeact.metric.xml: Replaced with 2+2 gaugeact. 2008-01-21 15:41 edwards * lib/io/: aniso_io.cc, aniso_io.h: Added makeFermCoeffs to convert AnisoParam to a multi1d suitable for weights in a Wilson dslash. 2008-01-21 15:40 edwards * lib/Makefile.am: Added coarse fine wilson fermact support. 2008-01-21 15:30 edwards * aclocal.m4, configure: Induced changes 2008-01-21 15:30 edwards * configure.ac: Changed to 3.28.0 2008-01-21 15:29 jbulava * lib/meas/: hadron/dilution_quark_source_const_w.cc, hadron/dilution_quark_source_const_w.h, hadron/dilution_scheme.h, inline/hadron/inline_stoch_group_baryon_w.cc: Included more sanity checks. Also, inline_stoch_group_baryon runs and produces output. 2008-01-21 15:18 edwards * lib/actions/ferm/: fermacts/eoprec_wilson_coarse_fine_fermact_w.cc, fermacts/eoprec_wilson_coarse_fine_fermact_w.h, fermacts/fermacts_aggregate_w.cc, fermacts/wilson_coarse_fine_fermact_params_w.cc, fermacts/wilson_coarse_fine_fermact_params_w.h, linop/clover_term_bagel_clover.cc, linop/eoprec_wilson_linop_w.cc, linop/eoprec_wilson_linop_w.h, linop/lwldslash_3d_qdp_w.cc, linop/lwldslash_3d_qdp_w.h, linop/lwldslash_3d_sse_w.cc, linop/lwldslash_3d_sse_w.h, linop/lwldslash_array_pab_w.cc, linop/lwldslash_array_pab_w.h, linop/lwldslash_array_qdpopt_w.cc, linop/lwldslash_array_qdpopt_w.h, linop/lwldslash_array_sse_old_w.h, linop/lwldslash_array_sse_w.cc, linop/lwldslash_array_sse_w.h, linop/lwldslash_array_w.cc, linop/lwldslash_array_w.h, linop/lwldslash_base_3d_w.cc, linop/lwldslash_base_3d_w.h, linop/lwldslash_base_array_w.cc, linop/lwldslash_base_array_w.h, linop/lwldslash_base_w.cc, linop/lwldslash_base_w.h, linop/lwldslash_qdpopt_w.cc, linop/lwldslash_qdpopt_w.h, linop/lwldslash_w.cc, linop/lwldslash_w.h, linop/lwldslash_w_pab.cc, linop/lwldslash_w_pab.h, linop/lwldslash_w_sse.cc, linop/lwldslash_w_sse.h, linop/lwldslash_w_sse_old.h: Changed internal storage of AnisoParam struct to a simple multi1d in all the WilsonDslash classes. The point is now there is a general reweighting of each derivative term in the dirac ops. That means all the base class and derived types now return this coeff. array. This actually simplifies the derivatives and other constructs like reweighting of the gauge fields. They now assume there is always some weight. Also added a 2+2 (coarse-fine) Wilson fermact ala TrinLat. That was the reason for the change, but actually the rearrangement is a general improvement. 2008-01-21 14:57 edwards * tests/chroma/hadron/propagator/: prec_dwf.eigcg.out.xml, prec_wilson.2+2.ini.xml, prec_wilson.2+2.metric.xml, prec_wilson.2+2.out.xml, regres.pl: Wilson coarse-fine. 2008-01-20 14:47 edwards * lib/actions/gauge/gaugeacts/: plaq_gaugeact.cc, plaq_gaugeact.h: Added, but commented out a "write" for the params. This doesn't work at the moment - no multi2d xml write in qdp++. 2008-01-20 14:46 edwards * lib/actions/gauge/gaugeacts/: gaugeacts_aggregate.cc, wilson_coarse_fine_gaugeact.cc, wilson_coarse_fine_gaugeact.h: Added coarse-fine wilson plaquette gauge action suitable for 2+2 anisotropy. 2008-01-20 14:46 edwards * tests/purgaug/: purgaug.2+2.ini.xml, purgaug.2+2.metric.xml, purgaug.2+2.out.xml, regres.pl: New 2+2 gaugeact. 2008-01-20 12:46 edwards * mainprogs/main/purgaug.cc: Generalized to LinearGaugeAction instead of just a WilsonGaugeAct. 2008-01-20 12:45 edwards * lib/update/heatbath/: mciter.cc, mciter.h: Generalized gauge actions to just LinearGaugeAction. 2008-01-20 12:44 edwards * lib/: actions/gauge/gaugeacts/gaugeacts_aggregate.cc, actions/gauge/gaugeacts/plaq_coarse_fine_gaugeact.cc, actions/gauge/gaugeacts/plaq_coarse_fine_gaugeact.h, Makefile.am: Removed coarse_fine gaugeact. 2008-01-20 12:42 edwards * lib/actions/gauge/gaugeacts/: plaq_gaugeact.cc, plaq_gaugeact.h: Changed to more general coefficient setup. No longer specific to just 3+1 aniso. Now can support any coefficients, but do allow old style constructors for convenience. 2008-01-20 12:40 edwards * tests/purgaug/purgaug.out.xml: Uses new style purgaug action setup. 2008-01-20 11:11 edwards * lib/actions/gauge/gaugeacts/plaq_coarse_fine_gaugeact.cc: Pull out some temporaries. 2008-01-19 22:07 edwards * lib/meas/smear/: link_smearing_aggregate.cc, stout_link_smearing_old.cc, stout_link_smearing_old.h, stout_smear_old.cc, stout_smear_old.h: Added in stout_link_smearing_old - the old buggy version for backwards compatibility. 2008-01-19 22:06 edwards * lib/Makefile.am: Added stout_link_smearing_old and stout_smearing_old - the old buggy versions for backwards compatibility. 2008-01-19 22:03 edwards * tests/chroma/smear/link_smear/: link_smear.ini.xml, link_smear.metric.xml, link_smear.out.xml: Added stout_link_smearing_old. 2008-01-19 16:21 mcneile * lib/actions/ferm/qprop/asqtad_cps_wrapper_qprop.cc: I have removed all the nasty printf statements I now use the double precision version of the level 3 library. This makes a big difference to restarts and things (as might be expected). 2008-01-19 16:18 mcneile * lib/meas/inline/hadron_s/inline_spectrum_s.cc: Fixed restart parameter. 2008-01-18 21:10 jbulava * lib/: Makefile.am, meas/hadron/dilution_quark_source_const_w.cc, meas/hadron/dilution_quark_source_const_w.h, meas/hadron/dilution_scheme_aggregate.cc, meas/inline/hadron/inline_stoch_group_baryon_w.cc: Factory registration issues in inline_stoch_group_baryon_w are ironed out 2008-01-18 13:50 jbulava * lib/meas/: hadron/dilution_quark_source_const_w.cc, hadron/dilution_scheme_aggregate.cc, inline/hadron/inline_stoch_group_baryon_w.cc: [no log message] 2008-01-18 11:43 jbulava * lib/Makefile.am, lib/meas/hadron/dilution_scheme.h, lib/meas/hadron/dilution_scheme_aggregate.cc, lib/meas/inline/hadron/inline_stoch_group_baryon_w.cc, lib/meas/inline/hadron/inline_stoch_group_baryon_w.h, mainprogs/make_ops/make_ops.cc: Fixed dilution stuff and inline_stoch_group_baryon. Everything now compiles on my machine. 2008-01-17 16:49 jbulava * lib/meas/hadron/: dilution_operator.h, dilution_operator_aggregate.cc, dilution_operator_aggregate.h, dilution_operator_factory.h, dilution_quark_source_const_w.h, dilution_scheme.h: [no log message] 2008-01-17 10:09 jbulava * lib/meas/: hadron/dilution_quark_source_const_w.cc, inline/hadron/inline_stoch_group_baryon_w.cc, inline/hadron/inline_stoch_group_baryon_w.h: [no log message] 2008-01-16 15:12 edwards * mainprogs/main/purgaug.cc: Put in more catch-es. 2008-01-16 15:05 edwards * tests/t_leapfrog/regres.pl: Added plaq_cf_gaugeact. 2008-01-16 15:02 edwards * tests/t_leapfrog/: t_leapfrog.plaq_cf_gaugeact.ini.xml, t_leapfrog.plaq_cf_gaugeact.log.xml, t_leapfrog.plaq_cf_gaugeact.metric.xml: Coarse-fine plaquette leapfrog test. 2008-01-16 14:11 edwards * lib/actions/gauge/gaugeacts/plaq_coarse_fine_gaugeact.cc: Added missing read of coarseP. 2008-01-16 14:03 edwards * lib/actions/ferm/invert/inv_eigcg2_array.cc: Fixed a resize. 2008-01-16 14:02 edwards * lib/Makefile.am: Added plaq_coarse_fine_gaugeact. Also rearranged some of the CXXFLAGS and the like. 2008-01-16 14:01 edwards * lib/actions/gauge/gaugeacts/: gaugeacts_aggregate.cc, plaq_coarse_fine_gaugeact.cc, plaq_coarse_fine_gaugeact.h: A new 2+2 style plaquette gaugeact. 2008-01-15 15:40 jbulava * lib/meas/inline/hadron/inline_stoch_group_baryon_v3_w.cc: [no log message] 2008-01-15 14:39 jbulava * lib/meas/: hadron/dilution_quark_source_const_w.cc, inline/hadron/inline_stoch_group_baryon_v3_w.cc: Added Diquark construction for source. 2008-01-14 17:12 kostas * lib/meas/hadron/delta_2pt_w.cc: fixed final bugs.. 2008-01-14 16:56 jbulava * lib/meas/inline/hadron/inline_stoch_group_baryon_v3_w.cc: Sources and sink calculated independently to same memory. 2008-01-13 17:59 edwards * lib/actions/ferm/invert/syssolver_linop_eigcg_array.h: Fixed size-ing. 2008-01-13 17:55 edwards * lib/actions/ferm/invert/: containers.h, syssolver_linop_eigcg_array.h: Fixed initialization. 2008-01-13 17:51 edwards * tests/chroma/hadron/propagator/: prec_dwf.eigcg.ini.xml, prec_dwf.eigcg.metric.xml, prec_dwf.eigcg.out.xml: Start of eigcg for dwf. 2008-01-13 17:44 edwards * lib/Makefile.am: Added eigcg_array versions of inv_eigcg2. 2008-01-13 17:43 edwards * lib/actions/ferm/invert/: inv_eigcg2_array.cc, syssolver_linop_aggregate.cc, syssolver_linop_eigcg_array.cc, syssolver_linop_eigcg_array.h: More fixes. Now compiles and links. 2008-01-13 16:08 edwards * lib/actions/ferm/invert/: containers.h, inv_eigcg2_array.cc, inv_eigcg2_array.h, norm_gram_schm.cc, norm_gram_schm.h, syssolver_linop_eigcg_array.cc, syssolver_linop_eigcg_array.h: Extended to support 5D style arrays. 2008-01-13 15:59 edwards * lib/actions/ferm/invert/inv_eigcg2.cc: Added a doxygen comment. 2008-01-13 13:49 edwards * tests/regres.pl: Commented back out the temporary regression override. 2008-01-11 13:14 kostas * lib/meas/hadron/: barspinmat_w.cc, barspinmat_w.h, delta_2pt_w.cc: fixed bugs and sings... 2008-01-11 10:36 kostas * lib/meas/hadron/dilution_quark_source_const_w.h: fixed typo (time_slices converted to timeslices) 2008-01-10 17:56 jbulava * lib/meas/: hadron/dilution_quark_source_const_w.cc, hadron/dilution_quark_source_const_w.h, inline/hadron/inline_stoch_group_baryon_v3_w.cc: [no log message] 2008-01-10 09:33 bjoo * mainprogs/main/hmc.cc: Fixed missing StopWatch declaration in hmc.cc 2008-01-09 16:15 jbulava * lib/meas/inline/hadron/inline_stoch_group_baryon_v3_w.cc: Finished source operator construction 2008-01-09 14:05 bjoo * lib/central_tprec_linop.h, lib/actions/ferm/linop/central_tprec_nospin_utils.h, lib/actions/ferm/linop/eo3dprec_s_cprec_t_wilson_linop_w.cc, lib/actions/ferm/linop/eo3dprec_s_cprec_t_wilson_linop_w.h, lib/actions/ferm/linop/iluprec_s_cprec_t_clover_linop_w.cc, lib/actions/ferm/linop/iluprec_s_cprec_t_clover_linop_w.h, lib/actions/ferm/linop/iluprec_s_cprec_t_wilson_linop_w.cc, lib/actions/ferm/linop/iluprec_s_cprec_t_wilson_linop_w.h, lib/actions/ferm/linop/iluprec_s_cprec_t_wilsonlike_linop_w.h, lib/actions/ferm/linop/unprec_s_cprec_t_wilson_linop_w.cc, lib/actions/ferm/linop/unprec_s_cprec_t_wilson_linop_w.h, mainprogs/tests/t_temp_prec.cc, tests/regres.pl: Updated a bunch of temp prec stuff 2008-01-09 14:03 bjoo * tests/t_leapfrog/: regres.tprec.pl, t_leapfrog.iluprec_s_cprec_t_clover.ini.xml, t_leapfrog.iluprec_s_cprec_t_clover.log.xml, t_leapfrog.iluprec_s_cprec_t_clover_logdetTT.ini.xml, t_leapfrog.iluprec_s_cprec_t_clover_logdetTT.log.xml, t_leapfrog.iluprec_s_cprec_t_clover_logdetTT_aniso_apbc.ini.xml, t_leapfrog.iluprec_s_cprec_t_clover_logdetTT_aniso_apbc.log.xml, t_leapfrog.iluprec_s_cprec_t_clover_logdetTT_schr1link.ini.xml, t_leapfrog.iluprec_s_cprec_t_clover_logdetTT_schr1link.log.xml, t_leapfrog.iluprec_s_cprec_t_clover_schr1link.ini.xml, t_leapfrog.iluprec_s_cprec_t_clover_schr1link.log.xml, t_leapfrog.iluprec_s_cprec_t_clover_schr2link.ini.xml, t_leapfrog.iluprec_s_cprec_t_clover_schr2link.log.xml, t_leapfrog.iluprec_s_cprec_t_wilson.ini.xml, t_leapfrog.iluprec_s_cprec_t_wilson.log.xml, t_leapfrog.iluprec_s_cprec_t_wilson_logdetTT.ini.xml, t_leapfrog.iluprec_s_cprec_t_wilson_logdetTT.log.xml, t_leapfrog.iluprec_s_cprec_t_wilson_logdetTT_aniso_apbc.ini.xml, t_leapfrog.iluprec_s_cprec_t_wilson_logdetTT_aniso_apbc.log.xml, t_leapfrog.iluprec_s_cprec_t_wilson_logdetTT_schr1link.ini.xml, t_leapfrog.iluprec_s_cprec_t_wilson_logdetTT_schr1link.log.xml, t_leapfrog.iluprec_s_cprec_t_wilson_schr1link.ini.xml, t_leapfrog.iluprec_s_cprec_t_wilson_schr1link.log.xml, t_leapfrog.iluprec_s_cprec_t_wilson_schr2link.ini.xml, t_leapfrog.iluprec_s_cprec_t_wilson_schr2link.log.xml, t_leapfrog.unprec_s_cprec_t_wilson.ini.xml, t_leapfrog.unprec_s_cprec_t_wilson.log.xml, t_leapfrog.unprec_s_cprec_t_wilson.metric.xml, t_leapfrog.unprec_s_cprec_t_wilson_logdetTT.ini.xml, t_leapfrog.unprec_s_cprec_t_wilson_logdetTT.log.xml, t_leapfrog.unprec_s_cprec_t_wilson_logdetTT.metric.xml, t_leapfrog.unprec_s_cprec_t_wilson_logdetTT_aniso_apbc.ini.xml, t_leapfrog.unprec_s_cprec_t_wilson_logdetTT_aniso_apbc.log.xml, t_leapfrog.unprec_s_cprec_t_wilson_logdetTT_aniso_apbc.metric.xml, t_leapfrog.unprec_s_cprec_t_wilson_logdetTT_schr1link.ini.xml, t_leapfrog.unprec_s_cprec_t_wilson_logdetTT_schr1link.log.xml, t_leapfrog.unprec_s_cprec_t_wilson_logdetTT_schr1link.metric.xml, t_leapfrog.unprec_s_cprec_t_wilson_schr1link.ini.xml, t_leapfrog.unprec_s_cprec_t_wilson_schr1link.log.xml, t_leapfrog.unprec_s_cprec_t_wilson_schr2link.ini.xml, t_leapfrog.unprec_s_cprec_t_wilson_schr2link.log.xml: Test Files for TempPrec Fermions 2008-01-09 13:49 edwards * mainprogs/main/hmc.cc: Added measurement of total time of HMC. 2008-01-08 14:06 jbulava * lib/meas/hadron/dilution_quark_source_const_w.h: Changed "dliution_operator" naming convention to "dilution_scheme" 2008-01-08 13:59 jbulava * lib/meas/inline/hadron/: inline_stoch_group_baryon_v3_w.cc, inline_stoch_group_baryon_v3_w.h, inline_stoch_group_baryon_w.cc, inline_stoch_group_baryon_w.h: [no log message] 2008-01-08 12:52 bjoo * tests/chroma/hadron/propagator/: iluprec_s_cprec_t_clover_schr1link.ini.xml, iluprec_s_cprec_t_clover_schr1link.metric.xml, iluprec_s_cprec_t_clover_schr1link.out.xml, iluprec_s_cprec_t_clover_schr2link.ini.xml, iluprec_s_cprec_t_clover_schr2link.metric.xml, iluprec_s_cprec_t_clover_schr2link.out.xml, iluprec_s_cprec_t_clover_schr2link_space.ini.xml, iluprec_s_cprec_t_clover_schr2link_space.metric.xml, iluprec_s_cprec_t_clover_schr2link_space.out.xml, iluprec_s_cprec_t_wilson_schr1link.ini.xml, iluprec_s_cprec_t_wilson_schr1link.metric.xml, iluprec_s_cprec_t_wilson_schr1link.out.xml, iluprec_s_cprec_t_wilson_schr2link.ini.xml, iluprec_s_cprec_t_wilson_schr2link.metric.xml, iluprec_s_cprec_t_wilson_schr2link.out.xml, iluprec_s_cprec_t_wilson_schr2link_space.ini.xml, iluprec_s_cprec_t_wilson_schr2link_space.metric.xml, iluprec_s_cprec_t_wilson_schr2link_space.out.xml, regres.tprec.pl, unprec_s_cprec_t_wilson_schr1link.ini.xml, unprec_s_cprec_t_wilson_schr1link.metric.xml, unprec_s_cprec_t_wilson_schr1link.out.xml, unprec_s_cprec_t_wilson_schr2link.ini.xml, unprec_s_cprec_t_wilson_schr2link.metric.xml, unprec_s_cprec_t_wilson_schr2link.out.xml, unprec_s_cprec_t_wilson_schr2link_space.ini.xml, unprec_s_cprec_t_wilson_schr2link_space.metric.xml, unprec_s_cprec_t_wilson_schr2link_space.out.xml: Regressions for various boundary conditions on temp prec actions 2008-01-07 11:00 jbulava * lib/meas/hadron/dilution_quark_source_const_w.cc: [no log message] 2008-01-07 10:19 jbulava * lib/meas/hadron/: dilution_quark_source_const_w.cc, dilution_quark_source_const_w.h, dilution_scheme.h, dilution_scheme_aggregate.cc, dilution_scheme_aggregate.h, dilution_scheme_factory.h: [no log message] 2008-01-06 10:15 mcneile * lib/meas/gfix/polar_dec.cc: I have now testes the reconstruction of the matrix outside this function. I had flip the order of the eigenvectors for the hermitian matrix. Reconstruction now works. 2008-01-06 06:19 mcneile * lib/actions/ferm/fermacts/hisq_fermact_s.cc: I have cleaned this code. It is still not reproducing Eduardo's numbers. 2008-01-06 06:13 mcneile * lib/actions/ferm/fermacts/hisq_fermact_s.cc: This still doesn't work, but I have fixed a number of bugs problems. 2008-01-06 06:02 mcneile * lib/meas/gfix/polar_dec.cc: There was a bug in this routine. The eigenvalue routines actually produced. A = U^dagger lambda U (where lambda are the eigenvalues) but the buggy code assumed A = U lambda U^dagger v_tmp = v * adj(w_tmp); v = w_tmp * v_tmp - u_tmp; The very useful diagnostic code flagged this up polar_dec::diff_sq 0.0498710271949223 polar_dec::unit_test 0.564576648622344 The two modifications now produce: polar_dec::diff_sq 5.42859407009672e-14 polar_dec::unit_test 3.64462955648059e-13 Also the new version of the code produces a more gauge invariant pion correlator from the HISQ action. 2008-01-04 10:09 mcneile * mainprogs/tests/t_propagator_s.cc: I have hacked this code as starting point to DEBUG the hisq code. 2008-01-04 07:56 mcneile * lib/actions/ferm/qprop/asqtad_cps_wrapper_qprop.cc: I have added an option to restart. Also print out the final residual rescaled by the norm of the source. Ths is needed for noise inversions where the norm of the source is large. 2008-01-04 07:09 mcneile * lib/meas/inline/hadron_s/inline_spectrum_s.cc: I have added a restart parameter to the input file. 2008-01-03 15:06 bjoo * lib/: Makefile.am, actions/ferm/linop/iluprec_s_cprec_t_clover_linop_w.cc, actions/ferm/linop/iluprec_s_cprec_t_clover_linop_w.h, actions/ferm/linop/iluprec_s_cprec_t_wilson_linop_w.cc, actions/ferm/linop/iluprec_s_cprec_t_wilson_linop_w.h, actions/ferm/linop/iluprec_s_cprec_t_wilsonlike_linop_w.h: Refactored to a base class in the ILU Prec case. 2008-01-02 12:05 bjoo * lib/: central_tprec_linop.h, actions/ferm/linop/iluprec_s_cprec_t_clover_linop_w.cc, actions/ferm/linop/iluprec_s_cprec_t_clover_linop_w.h, actions/ferm/linop/iluprec_s_cprec_t_wilson_linop_w.cc, actions/ferm/linop/iluprec_s_cprec_t_wilson_linop_w.h: Added force terms for ILUPrec WIlson and Clover. Both seem to conserve energy. Need more thorough testing 2008-01-01 18:09 edwards * tests/chroma/hadron/propagator/: unprec_graphene.ini.xml, unprec_graphene.out.xml: New output. 2008-01-01 17:59 edwards * tests/t_leapfrog/: t_leapfrog.unprec_graphene.ini.xml, t_leapfrog.unprec_graphene.log.xml: Fixed up output. The dH seems to scale correctly with step size. 2008-01-01 17:49 edwards * tests/chroma/hadron/propagator/: unprec_graphene.ini.xml, unprec_graphene.out.xml: Fixed output. 2008-01-01 17:45 edwards * lib/actions/ferm/linop/unprec_graphene_linop_w.cc: Put in missing mass. 2008-01-01 17:38 edwards * lib/actions/ferm/linop/unprec_graphene_linop_w.cc: Put in isign into the operator(). 2008-01-01 17:19 edwards * tests/: chroma/hadron/propagator/unprec_graphene.out.xml, t_leapfrog/t_leapfrog.unprec_graphene.ini.xml, t_leapfrog/t_leapfrog.unprec_graphene.log.xml, t_leapfrog/t_leapfrog.unprec_graphene.metric.xml: Test input. 2008-01-01 17:13 edwards * lib/actions/ferm/linop/: unprec_graphene_linop_w.cc, unprec_graphene_linop_w.h: Added derivative. 2007-12-31 18:24 edwards * lib/actions/ferm/: fermacts/fermacts_aggregate_w.cc, fermacts/unprec_graphene_fermact_w.cc, fermacts/unprec_graphene_fermact_w.h, linop/unprec_graphene_linop_w.cc, linop/unprec_graphene_linop_w.h: Added graphene fermact and linop. 2007-12-31 18:23 edwards * lib/Makefile.am: Added graphene operator. 2007-12-31 18:23 edwards * tests/chroma/hadron/propagator/: regres.pl, unprec_graphene.ini.xml, unprec_graphene.metric.xml, unprec_graphene.out.xml: New graphene operator. 2007-12-18 16:06 bjoo * lib/central_tprec_linop.h, lib/actions/ferm/linop/lwldslash_3d_sse_w.cc, lib/actions/ferm/linop/lwldslash_base_3d_w.cc, lib/actions/ferm/linop/unprec_s_cprec_t_wilson_linop_w.cc, lib/actions/ferm/linop/unprec_s_cprec_t_wilson_linop_w.h, lib/update/molecdyn/monomial/two_flavor_monomial_w.h, lib/update/molecdyn/monomial/unprec_two_flavor_monomial_w.cc, lib/update/molecdyn/monomial/unprec_two_flavor_monomial_w.h, tests/regres.pl: Unprec Space Tprec Time HMC terms now coded and conserve energy. Need Physics Testing -- and potentially double precision 2007-12-18 08:50 edwards * lib/Makefile.am: Added dilution routines. 2007-12-18 08:40 edwards * lib/meas/hadron/: dilution_operator_aggregate.cc, dilution_quark_source_const_w.cc, dilution_quark_source_const_w.h: Closer to compiling. 2007-12-18 07:43 edwards * lib/meas/hadron/: dilution_operator.h, dilution_quark_source_const_w.h: More changes in interface. Now only deals with const_iterators. The intent is that only LatticeFermions (or rather the template type "T") is served from this class. The stoch_group_baryon code at some point needs LatticeColorVector-s, but the dilution object itself only needs to deal with LatticeFermions. 2007-12-17 22:35 edwards * tests/chroma/hadron/stoch_group_baryon/stoch_group_baryon.new.ini.xml: New sample input file. This should go, eventually. 2007-12-17 17:44 edwards * lib/meas/inline/hadron/inline_stoch_group_baryon_v3_w.cc: Closer to the real thing. 2007-12-17 17:29 kostas * lib/actions/ferm/invert/inv_eigcg2.cc: started the optimized restart_x 2007-12-17 14:33 kostas * other_libs/qdp-lapack/: include/fortran_lapack.h, include/qdp-lapack.h, lib/fortran_lapack.cc: Included more LAPACK and BLAS interfaces needed for imporved eigCG I need Robert's confirmation that what I did with cgemm for LatticeFermion is OK 2007-12-16 06:54 mcneile * docs/readme_level3_staggered: Added documentation for some of the stupid things I have done. Why not rewrite/refactor??? 2007-12-16 06:43 mcneile * docs/readme_level3_staggered: I have added more information. 2007-12-15 00:11 kostas * lib/actions/ferm/invert/inv_eigcg2.cc: fixed slitghtly optimized eigCG` 2007-12-14 18:41 edwards * lib/meas/inline/hadron/inline_stoch_group_baryon_v3_w.cc: Figuring out what's really needed. 2007-12-14 16:47 kostas * lib/meas/hadron/delta_2pt_w.cc: [no log message] 2007-12-14 16:41 kostas * lib/meas/hadron/delta_2pt_w.cc: modified the spin averaged projector 2007-12-14 01:53 edwards * lib/meas/: hadron/dilution_operator.h, hadron/dilution_operator_aggregate.cc, hadron/dilution_operator_aggregate.h, hadron/dilution_operator_factory.h, hadron/dilution_quark_source_const_w.cc, hadron/dilution_quark_source_const_w.h, inline/hadron/inline_stoch_group_baryon_v3_w.cc, inline/hadron/inline_stoch_group_baryon_v3_w.h: First version of generic dilution operators on sources. The inline stoch_group_baryon code is now (trying) to use just these abstract dilution operators. 2007-12-14 00:03 kostas * lib/actions/ferm/invert/inv_eigcg2.cc: changed eigcg to avoid some flops and make it more elegant. Needs work but it runs 2007-12-13 08:22 bjoo * lib/central_tprec_fermact_w.h: A collective fermact for centrally time preconditioned operators 2007-12-12 16:42 bjoo * aclocal.m4, configure, lib/Makefile.am, lib/central_tprec_linop.h, lib/eo3dprec_s_cprec_t_wilstype_fermact_w.h, lib/iluprec_s_cprec_t_wilstype_fermact_w.h, lib/unprec_s_cprec_t_wilstype_fermact_w.h, lib/wilstype_fermact_w.h, lib/actions/ferm/linop/central_tprec_nospin_utils.h, lib/actions/ferm/linop/eo3dprec_s_cprec_t_clover_linop_w.h, lib/actions/ferm/linop/eo3dprec_s_cprec_t_wilson_linop_w.h, lib/actions/ferm/linop/iluprec_s_cprec_t_clover_linop_w.cc, lib/actions/ferm/linop/iluprec_s_cprec_t_clover_linop_w.h, lib/actions/ferm/linop/iluprec_s_cprec_t_wilson_linop_w.cc, lib/actions/ferm/linop/iluprec_s_cprec_t_wilson_linop_w.h, lib/actions/ferm/linop/unprec_s_cprec_t_wilson_linop_w.cc, lib/actions/ferm/linop/unprec_s_cprec_t_wilson_linop_w.h, lib/update/molecdyn/monomial/central_tprec_logdet_tt_monomial_w.cc, lib/update/molecdyn/monomial/central_tprec_logdet_tt_monomial_w.h, lib/update/molecdyn/monomial/monomial_aggregate_w.cc, tests/regres.pl, tests/chroma/hadron/propagator/regres.tprec.pl, tests/t_leapfrog/t_leapfrog.central_tprec_logdet_tt.ini.xml: Added LogDet Monomial for temp prec pieces. Seems to work too, but beware underflows when T is large 2007-12-11 17:59 mcneile * lib/actions/ferm/qprop/asqtad_cps_wrapper_qprop.cc: Cleaned up the code a litle bit. Thjis now works on the QCDOC hurray, finaly, at last. Need to clean up the code more. There is a hidden factor of 2 that needs to be made more explicit. 2007-12-08 12:52 mcneile * configure.ac: Fixed a problem 2007-12-08 09:23 mcneile * configure.ac: Sub the directory name for level 3 libraries. 2007-12-08 08:42 mcneile * docs/readme_level3_staggered: I have added additional material 2007-12-08 07:13 mcneile * docs/readme_level3_staggered: Some notes on calling the level3 asqtad inverters. 2007-12-08 06:37 mcneile * mainprogs/main/Makefile.am: Added hooks for level3 asqtad libraries. 2007-12-08 06:31 mcneile * mainprogs/main/spectrum_s.cc: Added some calls to start the level3 code. 2007-12-08 06:26 mcneile * lib/actions/ferm/qprop/asqtad_cps_wrapper_qprop.h: Added linear operator so that we can compute the residual with the pure chroma code. 2007-12-08 06:22 mcneile * configure.ac: I have removed the CPS hooks 2007-12-08 06:19 mcneile * configure.ac: I have added the hooks for the level3 code 2007-12-08 05:47 mcneile * lib/Makefile.am: Included flags for level 3 libraries 2007-12-06 13:46 jbulava * mainprogs/make_ops/: Makefile, make_make_ops_input.pl, make_ops.cc: [no log message] 2007-12-06 13:31 jbulava * lib/meas/: inline/hadron/inline_stoch_group_baryon_w.cc, smear/stout_smear.cc: [no log message] 2007-12-06 12:07 mcneile * lib/actions/ferm/qprop/asqtad_cps_wrapper_qprop.cc: This version works on a PC, but is a bit ugky. 2007-12-06 00:16 kostas * tests/chroma/hadron/hadron_contract/delta_2pt/delta_2pt.out.xml: new xml output 2007-12-06 00:12 kostas * lib/meas/hadron/delta_2pt_w.cc: added spin averaged correlator for the delta 2007-12-04 23:57 kostas * lib/Makefile.am: Makefiles were overwritten so delta_2pt was not included in the library. Added delta_2pt back into the mix... now the code compiles and links again... 2007-12-04 23:49 kostas * aclocal.m4, configure: [no log message] 2007-12-04 23:46 kostas * lib/meas/hadron/: barspinmat_w.cc, barspinmat_w.h, delta_2pt_w.cc: delta_2pt is now doing the delta.... needs checks for correctness though 2007-12-04 23:44 kostas * tests/chroma/hadron/hadron_contract/delta_2pt/: delta_2pt.ini.xml, delta_2pt.out.xml: delta_2pt sample ini.xml out.xml files : ---------------------------------------------------------------------- 2007-12-04 15:37 mcneile * lib/actions/ferm/qprop/: asqtad_cps_wrapper_qprop.cc, asqtad_cps_wrapper_qprop.h: Slight update. I can get the fat links into this routine. 2007-12-04 11:24 bjoo * aclocal.m4, configure, lib/Makefile.am, lib/actions/ferm/fermacts/eo3dprec_s_cprec_t_clover_fermact_w.cc, lib/actions/ferm/fermacts/eo3dprec_s_cprec_t_clover_fermact_w.h, lib/actions/ferm/fermacts/eo3dprec_s_cprec_t_wilson_fermact_w.cc, lib/actions/ferm/fermacts/eo3dprec_s_cprec_t_wilson_fermact_w.h, lib/actions/ferm/fermacts/fermacts_aggregate_w.cc, lib/actions/ferm/fermacts/iluprec_s_cprec_t_clover_fermact_w.cc, lib/actions/ferm/fermacts/iluprec_s_cprec_t_clover_fermact_w.h, lib/actions/ferm/fermacts/iluprec_s_cprec_t_wilson_fermact_w.cc, lib/actions/ferm/fermacts/iluprec_s_cprec_t_wilson_fermact_w.h, lib/actions/ferm/fermacts/unprec_s_cprec_t_wilson_fermact_w.cc, lib/actions/ferm/fermacts/unprec_s_cprec_t_wilson_fermact_w.h: Integrated 3d Dslash, into Temp Prec ops, and now use assembler 3D dslash for SSE 2007-12-04 11:04 bjoo * lib/actions/ferm/linop/: dslash_w.h, eo3dprec_s_cprec_t_clover_linop_w.cc, eo3dprec_s_cprec_t_clover_linop_w.h, eo3dprec_s_cprec_t_wilson_linop_w.cc, eo3dprec_s_cprec_t_wilson_linop_w.h, iluprec_s_cprec_t_clover_linop_w.cc, iluprec_s_cprec_t_clover_linop_w.h, iluprec_s_cprec_t_wilson_linop_w.cc, iluprec_s_cprec_t_wilson_linop_w.h, lwldslash_3d_qdp_w.cc, lwldslash_3d_qdp_w.h, lwldslash_3d_sse_w.cc, lwldslash_3d_sse_w.h, lwldslash_base_3d_w.cc, lwldslash_base_3d_w.h, unprec_s_cprec_t_wilson_linop_w.cc, unprec_s_cprec_t_wilson_linop_w.h: Added 3D Dslash base class, QDP version and SSE version, plus magic in dslash_w.h 2007-12-03 23:08 kostas * lib/: Makefile.am, meas/hadron/delta_2pt_w.cc, meas/hadron/delta_2pt_w.h, meas/hadron/hadron_contract_aggregate.cc: added hadron contract for decuplet 2pt functions 2007-12-03 21:59 kostas * lib/meas/hadron/simple_baryon_2pt_w.cc: added some bits of code for non-diagonal baryons 2007-12-03 11:36 bjoo * other_libs/sse_wilson_dslash/lib/: recons_64bit_parscalar.c, sse_su3dslash_64bit_parscalar.c, sse_su3dslash_64bit_parscalar_3d.c: Removed static loopcounters and made them non-static 2007-11-30 01:38 kostas * lib/meas/hadron/: barhqlq_w.cc, barhqlq_w.h, barspinmat_w.cc, barspinmat_w.h: added off diagonal Delta's and new spin matrices... need to add a couple of more projectors 2007-11-30 01:04 kostas * lib/meas/hadron/simple_baryon_2pt_w.h: added mixed Delta 2007-11-30 00:09 kostas * tests/chroma/hadron/npr/npr_vertex.out.xml: fixed test output 2007-11-30 00:06 kostas * lib/meas/hadron/npr_vertex_w.cc: fixed final bug... the code now works (passes free field tests for one derivative ops) 2007-11-29 10:11 tag chroma3-27-1 2007-11-29 10:11 bjoo * tests/t_leapfrog/: t_leapfrog.prec_slrc.log.xml, t_leapfrog.prec_slrc.sfnonpt.log.xml: SLRC Fixed tests 2007-11-29 09:19 bjoo * lib/actions/ferm/linop/eoprec_slrc_linop_w.cc: OK Did Cross Checks with SF too for the SLRC 2007-11-28 23:13 kostas * lib/meas/inline/hadron/inline_npr_vertex_w.cc, lib/meas/sources/mom_source_const.cc, lib/meas/sources/mom_source_const.h, tests/chroma/hadron/npr/npr.ini.xml, tests/chroma/hadron/npr/npr.out.xml, tests/chroma/hadron/npr/npr_vertex.ini.xml, tests/chroma/hadron/npr/npr_vertex.out.xml: fixed up vertex npr to not do momentum averaging 2007-11-28 17:09 bjoo * lib/actions/ferm/: fermacts/eoprec_slrc_fermact_w.h, linop/eoprec_slrc_linop_w.cc, linop/eoprec_slrc_linop_w.h: OK 2007-11-28 16:11 bjoo * lib/actions/ferm/fermstates/stout_fermstate_w.h: Put a little fix. MD looks ok for scalar 2007-11-28 15:50 bjoo * lib/actions/ferm/: fermstates/stout_fermstate_w.h, linop/eoprec_slrc_linop_w.cc: Changed the fermstates * 2007-11-28 14:50 bjoo * lib/actions/ferm/linop/: eoprec_slrc_linop_w.cc, eoprec_slrc_linop_w.h: Foo 2007-11-28 12:39 bjoo * lib/actions/ferm/linop/eoprec_slrc_linop_w.cc: Added force monitoring 2007-11-28 12:13 kostas * lib/meas/inline/hadron/inline_npr_vertex_w.cc: fixed back in fourier transform of quark propagator 2007-11-27 23:05 kostas * lib/meas/inline/hadron/: inline_npr_vertex_w.cc, inline_npr_vertex_w.h: npr_vertex now writes out the fourier transformed propagator 2007-11-27 23:04 kostas * tests/chroma/hadron/npr/: npr_vertex.ini.xml, npr_vertex.out.xml: New npr_vertex input file 2007-11-27 18:01 kostas * lib/io/: qprop_io.cc, qprop_io.h: added mometume extraction from source header 2007-11-21 11:22 bjoo * other_libs/sse_wilson_dslash/: NEWS, lib/sse_su3dslash_32bit_parscalar.c: Cleanup 2007-11-21 10:44 bjoo * other_libs/sse_wilson_dslash/lib/sse_su3dslash_32bit_scalar.c: Made scalar faster too 2007-11-21 09:48 bjoo * other_libs/sse_wilson_dslash/lib/: decomp_32bit_parscalar.c, sse_su3dslash_32bit_parscalar.c: Prefetch attempts 2007-11-20 10:26 bjoo * other_libs/sse_wilson_dslash/: lib/Makefile.am, lib/sse_su3dslash_32bit_parscalar.c, tests/testDslashFull.cc: No more padding, simplified loops on parscalar single 2007-11-19 17:04 bjoo * other_libs/sse_wilson_dslash/: lib/decomp_32bit_parscalar.c, lib/decomp_hvv_32bit_parscalar.c, lib/recons_32bit_parscalar.c, tests/testRecons32bit.cc: Added in spinor swizzling streamlining 2007-11-19 12:09 edwards * scripts/collect_regres_reports.pl: Collect regression reports. 2007-11-16 17:27 kostas * aclocal.m4, configure, lib/meas/inline/hadron/inline_hadron_aggregate.cc, lib/meas/inline/hadron/inline_npr_w.cc, lib/meas/inline/hadron/inline_npr_w.h, lib/meas/sources/mom_source_const.cc, lib/meas/sources/mom_source_const.h: Linked in the NPR task and modified the volume_momentum source to be able to take an offeset as an input 2007-11-16 17:22 kostas * tests/chroma/hadron/npr/: npr.ini.xml, npr.out.xml, npr_vertex.ini.xml, npr_vertex.out.xml: added NPR xml input and output 2007-11-15 10:08 mcneile * lib/actions/ferm/qprop/asqtad_cps_wrapper_qprop.cc: I have restored the state method of getting the configurations. 2007-11-15 08:48 mcneile * lib/actions/ferm/qprop/asqtad_cps_wrapper_qprop.cc: Still not fully working. Need to fix some problems with the gauge configurations. 2007-11-14 11:02 bjoo * tests/chroma/: hadron/propagator/prec_wilson-smearing.out.xml, smear/link_smear/link_smear.out.xml: Updated output files to do with link smearing 2007-11-13 21:06 bjoo * lib/meas/smear/stout_smear.cc: Ooops 2007-11-13 16:10 bjoo * lib/meas/smear/stout_smear.cc: Added a minus sign into the stout smear to account for John Bs problem 2007-11-12 15:06 bjoo * other_libs/sse_wilson_dslash/lib/: decomp_32bit_parscalar.c, decomp_hvv_32bit_parscalar.c, mvv_recons_32bit_parscalar.c: Renamed xmm registers. Went back to load high and load low things until I figure out the shufs 2007-11-12 10:17 tag chroma3-27-0 2007-11-12 10:17 edwards * aclocal.m4, configure: Induced changes 2007-11-12 10:17 edwards * NEWS: More info on 3.27.0 2007-11-12 10:17 edwards * configure.ac: Changed to 3.27.0 2007-11-12 10:16 edwards * scripts/regres_report_to_html.xsl: Small rearrangements in header. 2007-11-12 10:15 edwards * INSTALL, NEWS, README: New info. 2007-11-11 14:09 kostas * lib/actions/ferm/linop/: lwldslash_array_qdpopt_w.cc, lwldslash_array_w.cc, lwldslash_qdpopt_w.cc, lwldslash_w.cc: added preprocessor "if's" so that the code can compile with NC!=3 and break at run time when dslashes are used with NC!=3 2007-11-11 11:27 mcneile * lib/actions/ferm/qprop/asqtad_cps_wrapper_qprop.cc: I have cleaned up this routine. 2007-11-11 09:53 kostas * lib/meas/hadron/barQll_w.cc: made it so that it fails for Nc!=3 and Ns!=4 2007-11-11 09:52 mcneile * lib/actions/ferm/qprop/: asqtad_cps_wrapper_qprop.cc, asqtad_cps_wrapper_qprop.h: This is n almost working version of interface to qopop level3 inverters. Needs more work on packaging. 2007-11-11 09:48 kostas * lib/meas/hadron/barQll_w.cc: fixed it so that it compiles for NC!=3 2007-11-10 16:33 edwards * tests/chroma/hadron/gauge_transf/regres.pl: Fixed paths. 2007-11-09 17:03 edwards * lib/io/qprop_io.cc: Pushed gauge_header read for the Config_info group into its own reader. Now, a default (empty) group is supplied for Config_info if it is not present. 2007-11-09 16:28 edwards * lib/meas/inline/io/: qio_read_obj_funcmap.cc, qio_write_obj_funcmap.cc: New reader/write for RitzPairs object. 2007-11-09 16:27 edwards * lib/meas/inline/io/inline_gaussian_obj.cc: Added more cases for gaussian initialization. 2007-11-09 16:26 edwards * lib/meas/inline/hadron/: inline_gauge_transf_obj.cc, inline_gauge_transf_obj.h, inline_hadron_aggregate.cc: Added inline_gauge_transf. 2007-11-09 16:26 edwards * lib/meas/inline/glue/: inline_glue_aggregate.cc, inline_random_transf_gauge.cc, inline_random_transf_gauge.h: Added inline_random_transf_gauge 2007-11-09 16:26 edwards * lib/Makefile.am: Added inline_random_transf_gauge and inline_gauge_transf_obj. 2007-11-09 16:24 edwards * tests/: chroma/hadron/gauge_transf/gauge_transf.ini.xml, chroma/hadron/gauge_transf/gauge_transf.metric.xml, chroma/hadron/gauge_transf/gauge_transf.out.xml, chroma/hadron/gauge_transf/regres.pl, regres.pl: New regression tests. 2007-11-09 16:18 edwards * lib/meas/inline/gfix/: inline_coulgauge.cc, inline_coulgauge.h: Now require output of gauge rotation fields. 2007-11-09 15:57 edwards * tests/chroma/gfix/coulgauge/: coulgauge.ini.xml, coulgauge.out.xml: Now requires the output of the gauge_rotation matrices. 2007-11-08 10:04 bjoo * lib/actions/ferm/fermstates/stout_fermstate_params.cc, lib/actions/ferm/fermstates/stout_fermstate_w.h, lib/actions/ferm/linop/eoprec_slrc_linop_w.cc, lib/actions/ferm/linop/eoprec_slrc_linop_w.h, other_libs/Makefile.am, other_libs/qdp-lapack/Makefile.am, other_libs/qdp-lapack/lib/Makefile.am, tests/t_leapfrog/regres.pl, tests/t_leapfrog/t_leapfrog.prec_slrc.ini.xml, tests/t_leapfrog/t_leapfrog.prec_slrc.log.xml, tests/t_leapfrog/t_leapfrog.prec_slrc.metric.xml: Fixed Makefiles. Added SLRC patches. Added Dirks bugreport fix 2007-11-07 22:27 edwards * tests/chroma/hadron/propagator/regres.pl: Turned on prec_clover.eigcg test. 2007-11-07 22:26 edwards * tests/chroma/hadron/propagator/: prec_clover.eigcg.metric.xml, prec_clover.eigcg.out.xml: First version. 2007-11-07 15:52 bjoo * other_libs/sse_wilson_dslash/tests/: t_site_ops_parscalar.cc, testMvvRecons.h, testMvvRecons32bit.cc, testMvvRecons64bit.cc: Took out the deswizzling at the ends of hvv_decomp - did this before - but now I fixed the tests this broke 2007-11-07 11:24 bjoo * other_libs/sse_wilson_dslash/lib/: Makefile.am, decomp_32bit_parscalar.c: Oopsies 2007-11-07 10:50 bjoo * other_libs/sse_wilson_dslash/: aclocal.m4, configure, lib/Makefile.am, lib/decomp_32bit_parscalar.c, tests/timeDslash.cc, tests/timeDslash3D.cc: Added function to dump assembly 2007-11-06 19:40 edwards * lib/meas/hadron/simple_baryon_seqsrc_w.cc: Fixed some doxygen comments. 2007-11-06 17:04 kostas * lib/actions/ferm/invert/: inv_eigcg2.cc, norm_gram_schm.cc, octave.h, syssolver_linop_eigcg.cc: fixed the code... it works now... mostly. Needes alot of optimization and testing for the various running modes. 2007-11-02 16:03 kostas * lib/actions/ferm/fermstates/extfield_aggregate_w.cc: removed debugging info 2007-11-02 15:07 bjoo * other_libs/sse_wilson_dslash/lib/: decomp_32bit_parscalar.c, decomp_hvv_32bit_parscalar.c, mvv_recons_32bit_parscalar.c, recons_32bit_parscalar.c: Rearranged many parscalar thingies 2007-11-02 12:34 kostas * lib/actions/ferm/fermstates/: extfield_aggregate_w.cc, extfield_aggregate_w.h, extfield_fermstate_w.h: I think it works now 2007-11-01 23:52 kostas * lib/actions/ferm/fermstates/: extfield_aggregate_w.cc, extfield_fermstate_w.cc: External Field now runs!! Do not know if it works though... 2007-11-01 16:56 kostas * lib/actions/ferm/fermstates/: extfield_aggregate_w.cc, extfield_aggregate_w.h, extfield_fermstate_w.h, ferm_createstate_aggregate_w.cc: extfield improvements... still failing on creating the External Field dudad... 2007-11-01 14:30 bjoo * other_libs/sse_wilson_dslash/tests/timeDslash3D.cc: There was some funny with the parscalar single timing routine. Fixed now 2007-11-01 11:33 bjoo * other_libs/sse_wilson_dslash/: lib/shift_tables_scalar_3d.c, tests/timeDslash.cc: OK Added timing for 3d Dslash 2007-11-01 11:20 bjoo * other_libs/sse_wilson_dslash/tests/: Makefile.am, timeDslash3D.cc, timeDslash3D.h, time_dslash_3d.cc: Added 3D Dslash timing 2007-11-01 10:51 bjoo * other_libs/sse_wilson_dslash/tests/: dslash_3d_w.cc, testSiteDslash32bit.cc: Added Scalar 3D Dslash 2007-11-01 10:35 bjoo * other_libs/sse_wilson_dslash/include/: shift_tables_scalar.h, site_dslash_32bit_scalar.h, site_dslash_64bit_scalar.h: Added 3D dslashen 2007-11-01 10:32 bjoo * other_libs/sse_wilson_dslash/lib/: Makefile.am, shift_tables_scalar_3d.c, site_dslash_32bit_scalar.c, sse_su3dslash_32bit_scalar_3d.c, sse_su3dslash_64bit_scalar_3d.c: Added scalar versions of the 3d dslashen 2007-10-31 13:35 bjoo * other_libs/sse_wilson_dslash/include/mvv_recons_64bit.h: Added 64 bit 3D Dslash 2007-10-31 13:34 bjoo * other_libs/sse_wilson_dslash/lib/: Makefile.am, mvv_recons_64bit_parscalar.c, qdp_packer_3d.cc, recons_64bit_parscalar.c, sse_su3dslash_64bit_parscalar_3d.c: OK 3D Dslash Parscalar Double Prec in 2007-10-31 11:23 bjoo * other_libs/sse_wilson_dslash/: aclocal.m4, configure: First version with working 3D Dslash in parscalar-single 2007-10-31 11:12 bjoo * other_libs/sse_wilson_dslash/lib/: Makefile.am, mvv_recons_32bit_parscalar.c, recons_32bit_parscalar.c, shift_tables_parscalar_3d.c, sse_su3dslash_32bit_parscalar.c, sse_su3dslash_32bit_parscalar_3d.c: First cut at 3D dude is in 2007-10-31 11:11 bjoo * other_libs/sse_wilson_dslash/tests/: Makefile.am, dslash_3d_w.cc, dslash_3d_w.h, t_dslash_3d.cc, testDslash3D.cc, testDslash3D.h, testDslashFull.cc, testSiteDslash32bit.cc, timeDslash.cc, unittest.h: OK, seems to work 2007-10-31 11:05 bjoo * other_libs/sse_wilson_dslash/include/: Makefile.am, mvv_recons_32bit.h, recons.h, shift_tables_parscalar.h, sse_dslash_3d.h, sse_dslash_qdp_packer.h, sse_dslash_qdp_packer_3d.h: First cut with working 3d dslash in parscalar single 2007-10-31 10:53 edwards * Makefile.am: Fixed name of regres_report_to_html.xsl 2007-10-31 10:19 edwards * aclocal.m4, configure: Induced changes 2007-10-31 10:18 edwards * Makefile.am: Added a "report" target in addition to the "xcheck" target. 2007-10-31 10:14 edwards * scripts/: check_regres_runner.pl, create_regres_runner.pl, queue_chroma_regressions.pl, run_chroma_xmldiff.pl, strip_bar3ptfn.pl, wallformfac_delta.pl, wallformfac_nucl.pl, wallformfac_pion.pl, wallformfac_rhopi.pl: Changed name printed in Usage to $0 instead of a fixed (wrong) string name. 2007-10-29 22:56 kostas * lib/actions/ferm/fermstates/: extfield_aggregate_w.cc, extfield_aggregate_w.h, extfield_fermstate_w.cc: still the linker fails if I add in the CreatExtFieldFermStateEnv::registerAll() 2007-10-29 01:04 edwards * lib/util/ferm/gammasgn_w.cc: Changed an error output line to use the __func__ name instead of an (incorrect) string name. 2007-10-28 00:05 kostas * aclocal.m4, configure, lib/actions/ferm/fermstates/extfield_aggregate_w.cc, lib/actions/ferm/fermstates/extfield_aggregate_w.h, lib/actions/ferm/fermstates/extfield_fermstate_w.cc, lib/actions/ferm/fermstates/extfield_fermstate_w.h, lib/actions/ferm/fermstates/ferm_createstate_aggregate_w.cc, lib/actions/ferm/fermstates/fermstates.h: added external field (constant magnetic)... linker still fails... though. 2007-10-27 17:52 edwards * other_libs/: sse_wilson_dslash/aclocal.m4, sse_wilson_dslash/include/sse_config_internal.h.in, sse_wilson_dslash/configure, cg-dwf/aclocal.m4, cg-dwf/cg-dwf-config-internal.h.in, cg-dwf/configure, intel_sse_wilson_dslash/aclocal.m4, intel_sse_wilson_dslash/include/sse_config_internal.h.in, intel_sse_wilson_dslash/configure: Induced changes 2007-10-27 17:46 edwards * other_libs/qdp-lapack/: aclocal.m4, include/qdp-lapack_config_internal.h.in, configure: Induced changes 2007-10-27 17:09 edwards * aclocal.m4, configure: Induced changes 2007-10-26 17:17 tag chroma3-26-0 2007-10-26 17:17 bjoo * other_libs/qdp-lapack/configure: Fixed atypo indslash 2007-10-26 17:16 bjoo * other_libs/sse_wilson_dslash/: configure, lib/sse_su3dslash_64bit_parscalar.c: Oops. propagated stuff to double precision branch 2007-10-26 15:38 bjoo * aclocal.m4, configure.ac, configure, NEWS, other_libs/qdp-lapack/configure, other_libs/sse_wilson_dslash/configure: Bumped version and reran autotools 2007-10-25 23:31 kostas * lib/actions/ferm/invert/: containers.h, inv_eigcg2_driver.cc, syssolver_linop_eigcg.cc: fixed several bugs here and there. The eigCG iteration seems to work. However, the refinment does not.... 2007-10-25 17:35 edwards * lib/actions/ferm/invert/syssolver_linop_eigcg.h: Fixed initialization of MdagM to go through MdagMLinOp. 2007-10-25 12:10 bjoo * configure, configure.ac, lib/Makefile.am, lib/chroma_config_internal.h.in, lib/actions/ferm/linop/dslash_array_w.h, lib/actions/ferm/linop/dslash_w.h, lib/actions/ferm/linop/lwldslash_array_sse_old_w.cc, lib/actions/ferm/linop/lwldslash_array_sse_old_w.h, lib/actions/ferm/linop/lwldslash_array_sse_w.cc, lib/actions/ferm/linop/lwldslash_array_sse_w.h, lib/actions/ferm/linop/lwldslash_w_sse.cc, lib/actions/ferm/linop/lwldslash_w_sse.h, lib/actions/ferm/linop/lwldslash_w_sse_old.cc, lib/actions/ferm/linop/lwldslash_w_sse_old.h, mainprogs/main/Makefile.am, mainprogs/tests/Makefile.am, other_libs/qdp-lapack/configure, other_libs/sse_wilson_dslash/configure: Added new sse dslash. Old one will still work with --enable-sse-wilson-dslash-old switch 2007-10-24 15:54 bjoo * other_libs/sse_wilson_dslash/: include/shift_tables_parscalar.h, include/sse_dslash_qdp_packer.h, lib/decomp_32bit_parscalar.c, lib/decomp_hvv_32bit_parscalar.c, lib/mvv_recons_32bit_parscalar.c, lib/recons_32bit_parscalar.c, lib/shift_tables_parscalar.c, lib/site_dslash_32bit_scalar.c, lib/sse_su3dslash_32bit_parscalar.c, tests/timeDslash.cc: Aligned the stupid sign thingies and moved the offsetting back into the parscalar single prec dslash. The code now runs at a speed comparable to the old Dslash at least on a 64 bit machine. I mucked about with trying to use extra registers in mvv_decomp and it seems to help a little but the gain is hard to quantify - work that one out 2007-10-24 09:48 tag chroma3-25-0 2007-10-24 09:48 edwards * NEWS: Info on 3.25.0 2007-10-24 09:45 edwards * tests/t_leapfrog/t_leapfrog.prec_2flav_clover_ee_oo.metric.xml: Changed name of a xml group. 2007-10-24 09:40 edwards * lib/actions/ferm/invert/: syssolver_linop_eigcg.cc, syssolver_linop_eigcg.h: Moved some unneeded includes to the .cc file. 2007-10-24 00:26 edwards * other_libs/qdp-lapack/include/fortran_lapack.h: Changed include of chromabase.h to qdp.h 2007-10-23 23:53 edwards * lib/actions/ferm/invert/inv_eigcg2.cc: Changed output name in inverter to InvEigCG2. 2007-10-23 23:38 edwards * tests/chroma/hadron/propagator/: prec_clover.eigcg.ini.xml, prec_clover.eigcg.out.xml: First version. Not working yet. 2007-10-23 23:29 edwards * tests/t_leapfrog/t_leapfrog.prec_2flav_clover_ee_oo.log.xml: Updated to use new names. 2007-10-23 23:01 edwards * configure: Induced changes 2007-10-23 22:58 edwards * configure.ac: Changed to 3.25.0 2007-10-23 22:56 edwards * aclocal.m4: Induced changes 2007-10-23 22:55 edwards * other_libs/Makefile.am: Now build qdp-lapack. 2007-10-23 22:54 edwards * configure.ac, mainprogs/main/Makefile.am, mainprogs/tests/Makefile.am: Turned on qdp-lapack. 2007-10-23 22:53 edwards * lib/: Makefile.am, actions/ferm/invert/syssolver_linop_aggregate.cc: Added qdp-lapack to library and include file. Turned on EigCG solver. 2007-10-23 22:46 edwards * lib/update/molecdyn/monomial/: eoprec_logdet_ee_monomial_w.cc, eoprec_logdet_ee_monomial_w.h, monomial_aggregate_w.cc: Changed logdet to a consistent naming scheme. 2007-10-23 22:46 edwards * lib/meas/hadron/barhqlq_w.cc: Fixed a doxygen comment. 2007-10-23 22:41 edwards * other_libs/qdp-lapack/lib/: fortran_lapack.cc, lapack_stub.cc: Fixed QDPLapack namespace. 2007-10-23 22:40 edwards * other_libs/qdp-lapack/configure: Induced changes. 2007-10-23 22:39 edwards * other_libs/qdp-lapack/configure.ac: Added AC_MSG_NOTICE. 2007-10-23 22:38 edwards * lib/actions/ferm/invert/: inv_eigcg2.cc, norm_gram_schm.cc, syssolver_linop_eigcg.cc, syssolver_linop_eigcg.h: Changed to use QDPLapack environment. 2007-10-23 21:51 edwards * lib/actions/ferm/invert/: chroma_lapack.h, lapack_wrapper.cc, lapack_wrapper.h: Moved to qdp-lapack. 2007-10-23 21:50 edwards * lib/actions/ferm/invert/syssolver_linop_eigcg.cc: Changes to support new call interface. 2007-10-23 21:15 edwards * other_libs/qdp-lapack/: include/clapack_wrapper.h, include/fortran_lapack.h, lib/clapack.cc, lib/fortran_lapack.cc: Renamed. 2007-10-23 21:14 edwards * other_libs/qdp-lapack/: include/qdp-lapack_config_internal.h.in, aclocal.m4, configure: Induced changes. 2007-10-23 21:14 edwards * other_libs/qdp-lapack/configure.ac: Added enable and AM_CONDITIONALs. 2007-10-23 21:13 edwards * other_libs/qdp-lapack/: include/Makefile.am, lib/Makefile.am: Renamed some files. 2007-10-23 21:13 edwards * other_libs/qdp-lapack/acinclude.m4: Added QDP++ build macro. 2007-10-19 09:47 bjoo * other_libs/sse_wilson_dslash/tests/: time_dslash.cc, unittest.h: Added qmt_init call to unittest.h 2007-10-17 10:47 bjoo * other_libs/sse_wilson_dslash/: lib/decomp_32bit_parscalar.c, lib/decomp_hvv_32bit_parscalar.c, lib/mvv_recons_32bit_parscalar.c, lib/recons_32bit_parscalar.c, tests/Makefile.am, tests/unittest.h: Replaced MULs with XORs 2007-10-16 16:12 edwards * lib/meas/schrfun/sfpcac_w.cc: Some more print statements. 2007-10-16 16:11 edwards * lib/meas/schrfun/: sfcurrents_w.cc, sfpcac_w.cc: Added some debugging print statements. 2007-10-16 07:49 bjoo * other_libs/sse_wilson_dslash/tests/time_dslash.cc: Timing changed to nicer volume 2007-10-13 17:04 edwards * lib/meas/inline/eig/inline_eigbnds.cc: Fixed namespace to "name". 2007-10-13 17:02 edwards * lib/meas/inline/glue/inline_wilslp.cc: Added some diagnostic output. 2007-10-13 16:55 edwards * mainprogs/main/hmc.cc: Added more diagnostic output around default measurements. 2007-10-13 16:46 edwards * lib/meas/inline/: eig/inline_eigbnds.cc, hadron/inline_make_source_w.cc, hadron/inline_mesonspec_w.cc, hadron/inline_propagator_w.cc, hadron/inline_sink_smear_w.cc, schrfun/inline_sfpcac_w.cc: Moved around diagnostic printing so as to appear at the beginning of the function call. 2007-10-12 16:49 bjoo * other_libs/sse_wilson_dslash/: configure, tests/Makefile.am, tests/timeDslash.cc, tests/timeDslash.h, tests/time_dslash.cc: Added a DslashTiming test - time_dslash 2007-10-11 16:22 edwards * other_libs/qdp-lapack/include/qdp-lapack.h: Initial version. 2007-10-11 16:21 edwards * other_libs/qdp-lapack/: AUTHORS, COPYING, INSTALL, Makefile.am, NEWS, README, aclocal.m4, configure, configure.ac, config/depcomp, config/install-sh, config/missing, config/mkinstalldirs, include/Makefile.am, include/clapack_wrapper.h, include/qdp-lapack_config_internal.h.in, lib/Makefile.am, lib/clapack.cc, lib/lapack_stub.cc: Very first crack at a qdp-lapack package. 2007-10-11 15:00 edwards * lib/actions/ferm/invert/: inv_eigcg2.cc, inv_eigcg2.h, norm_gram_schm.cc, norm_gram_schm.h, syssolver_linop_eigcg.cc, syssolver_linop_eigcg.h: Rerrangement of code. 2007-10-09 14:07 edwards * lib/actions/ferm/invert/: containers.h, inv_eigcg2.cc, inv_eigcg2.h, syssolver_linop_eigcg.cc, syssolver_linop_eigcg.h: More code compiles. 2007-10-09 11:34 edwards * tests/t_leapfrog/t_leapfrog.prec_slrc.sfnonpt.out.xml: Do no need. 2007-10-09 11:34 edwards * tests/t_leapfrog/t_leapfrog.prec_slrc.sfnonpt.log.xml: Added log file. 2007-10-09 10:02 edwards * lib/actions/ferm/fermacts/fermacts_w.h: Added SLIC and SLRC. 2007-10-09 01:29 edwards * lib/meas/inline/io/qio_write_obj_funcmap.cc: Moved RitzPairs to a namespace. 2007-10-09 01:28 edwards * lib/actions/ferm/invert/: containers.h, inv_eigcg2.cc, inv_eigcg2.h, lapack_wrapper.h, simpleGramSchmidt.cc, simpleGramSchmidt.h: Inv_eigcg2 appears to compile. Moved Gram-Schmidt routines into inv_eigcg2 2007-10-08 23:31 edwards * lib/actions/ferm/linop/: eoprec_slrc_linop_w.cc, eoprec_slrc_linop_w.h: Added RCS Id tag. 2007-10-08 23:28 edwards * lib/actions/ferm/fermacts/fermacts_aggregate_w.cc: Turned on SLRC. 2007-10-08 23:27 edwards * tests/t_leapfrog/: regres.pl, t_leapfrog.prec_slrc.sfnonpt.ini.xml, t_leapfrog.prec_slrc.sfnonpt.metric.xml, t_leapfrog.prec_slrc.sfnonpt.out.xml: Added prec_slrc.sfnonpt . 2007-10-08 23:06 edwards * lib/: Makefile.am, actions/ferm/fermacts/eoprec_slrc_fermact_w.cc, actions/ferm/fermacts/eoprec_slrc_fermact_w.h, actions/ferm/linop/eoprec_slic_linop_w.cc, actions/ferm/linop/eoprec_slic_linop_w.h, actions/ferm/linop/eoprec_slrc_linop_w.cc, actions/ferm/linop/eoprec_slrc_linop_w.h: Added containers.h and eoprec_slrc_{fermact,linop}. Modified SLIC to not be specific to SimpleFermState. 2007-10-08 23:03 edwards * lib/meas/inline/io/qio_write_obj_funcmap.cc: Added RitzPairsLatticeFermion writer. 2007-10-08 23:03 edwards * lib/actions/ferm/invert/containers.h: Some more fixes. Now compiles within qio_write_funcmap_w.o 2007-10-08 16:44 edwards * lib/actions/ferm/invert/syssolver_eigcg_params.h: Fixed compilation. 2007-10-07 22:58 edwards * lib/actions/ferm/invert/containers.h: Try to finish some of RitzPairs. 2007-10-06 11:33 edwards * lib/actions/ferm/linop/central_tprec_nospin_utils.h: Hopefully should compile for other Nc and Ns. It won't work, however, for anything other than Nc=3 and Ns=4 2007-10-06 11:24 edwards * lib/util/gauge/stout_utils.cc: Fixed a Nc construct. 2007-10-05 01:28 edwards * docs/chromadoc: Updated by doxygen itself to newer input version. 2007-10-04 23:39 edwards * lib/actions/ferm/invert/: syssolver_eigcg_params.cc, syssolver_eigcg_params.h: Added cleanUpEvecs option. 2007-10-04 23:39 edwards * lib/actions/ferm/invert/containers.h: Removed include of handle.h 2007-10-04 23:38 edwards * lib/actions/ferm/invert/syssolver_linop_eigcg.h: Added an erase option for the named object. 2007-10-04 17:39 edwards * lib/actions/ferm/invert/: containers.h, syssolver_linop_eigcg.h: Started switch to a container called RitzPairs for GoodEval and GoodEvec. 2007-10-04 16:39 kostas * lib/actions/ferm/invert/inv_eigcg2.cc: added a new subspace matrix to act on ritz pairs 2007-10-04 09:53 edwards * lib/util/ferm/eigeninfo.h: Added some doxygen info. 2007-10-03 13:18 bjoo * other_libs/sse_wilson_dslash/tests/: t_dslash.cc, t_dslash_parscalar.cc, t_dslash_scalar.cc, t_site_ops_parscalar.cc, t_site_ops_scalar.cc: OK. Mucked more with the tests 2007-10-03 13:13 bjoo * other_libs/sse_wilson_dslash/: configure, configure.ac, lib/decomp_32bit_parscalar.c, lib/decomp_hvv_32bit_parscalar.c, lib/recons_32bit_parscalar.c, tests/Makefile.am: OK added --enable-testing so I can build but not run the tests and I added --enable-site-tests to enable the sse site operations 2007-10-02 16:54 bjoo * other_libs/sse_wilson_dslash/: include/decomp.h, include/decomp_hvv.h, include/mvv_recons_64bit.h, include/recons.h, lib/decomp_64bit_parscalar.c, lib/decomp_hvv_64bit_parscalar.c, lib/mvv_recons_64bit_parscalar.c, lib/recons_64bit_parscalar.c, lib/sse_su3dslash_64bit_parscalar.c: Cleaned out some compiler warnings and unused variables 2007-10-02 16:40 bjoo * other_libs/sse_wilson_dslash/: include/Makefile.am, include/site_dslash_32bit_scalar.h, include/site_dslash_64bit_scalar.h, include/sse32.h, include/sse64.h, lib/Makefile.am, lib/site_dslash_32bit_scalar.c, lib/site_dslash_64bit_scalar.c, lib/sse_su3dslash_32bit_scalar.c, lib/sse_su3dslash_64bit_scalar.c, tests/Makefile.am, tests/sse32.h, tests/sse64.h, tests/t_dslash.cc, tests/t_dslash_scalar.cc, tests/testSiteDslash.h, tests/testSiteDslash32bit.cc, tests/testSiteDslash64bit.cc: OK. Removed inlines from scalar builds, complete with tests. Moved sse.h files with old inline code into the tests area 2007-10-01 16:09 bjoo * other_libs/sse_wilson_dslash/tests/: testDecomp32bit.cc, testDecomp64bit.cc, testDecompHvv32bit.cc, testMvvRecons32bit.cc, testMvvRecons64bit.cc, testRecons32bit.cc, testRecons64bit.cc: Cleaned up the tests a little 2007-10-01 14:45 bjoo * other_libs/sse_wilson_dslash/: configure, include/types32.h, include/types64.h, lib/sse_su3dslash_32bit_parscalar.c, lib/sse_su3dslash_64bit_parscalar.c: Replaced the prefetch macros. The parscalar files no longer depend on sse32.h and sse64.h 2007-10-01 14:17 bjoo * other_libs/sse_wilson_dslash/: include/Makefile.am, include/mvv_recons.h, include/mvv_recons_32bit.h, include/mvv_recons_64bit.h, lib/Makefile.am, lib/decomp_64bit_parscalar.c, lib/decomp_hvv_64bit_parscalar.c, lib/mvv_recons_32bit_parscalar.c, lib/mvv_recons_64bit_parscalar.c, lib/recons_64bit_parscalar.c, lib/sse_su3dslash_64bit_parscalar.c, tests/Makefile.am, tests/t_dslash.cc, tests/t_dslash_parscalar.cc, tests/testDecomp32bit.cc, tests/testDecomp64bit.cc, tests/testDecompHvv64bit.cc, tests/testMvvRecons32bit.cc, tests/testMvvRecons64bit.cc, tests/testRecons64bit.cc: 64 bit parscalar now works with intrinsics 2007-09-27 22:09 kostas * lib/actions/ferm/invert/: syssolver_eigcg_params.cc, syssolver_eigcg_params.h: added one more parameter... 2007-09-27 22:05 kostas * lib/actions/ferm/invert/inv_eigcg2_driver.cc: just a remnider comment that this file needs to be removed once I am done with eigCG 2007-09-27 22:02 kostas * lib/actions/ferm/invert/: inv_eigcg2.cc, syssolver_linop_eigcg.cc, syssolver_linop_eigcg.h: added the maing eigCG loop ... we are ready to test compilation... 2007-09-27 16:07 bjoo * other_libs/sse_wilson_dslash/include/: Makefile.am, decomp_hvv.h, mvv_recons.h, recons.h: OK. Converted the inline assembly for the 32bit targets modulo the prefetching macros 2007-09-27 16:07 bjoo * other_libs/sse_wilson_dslash/tests/: Makefile.am, t_dslash.cc, testDecompHvv32bit.cc, testMvvRecons.h, testMvvRecons32bit.cc, testRecons.h, testRecons32bit.cc: Added tests for 32bit site decomp/recon stuff 2007-09-27 16:05 bjoo * other_libs/sse_wilson_dslash/lib/: Makefile.am, decomp_hvv_32bit_parscalar.c, mvv_recons_32bit_parscalar.c, recons_32bit_parscalar.c, sse_su3dslash_32bit_parscalar.c: Added recons etc 2007-09-27 10:47 kostas * lib/actions/ferm/invert/: syssolver_cg_params.cc, syssolver_eigcg_params.cc, syssolver_eigcg_params.h: done with the eigcg params. fixed bug in write() of syssolver_cg_params 2007-09-27 00:33 edwards * lib/meas/inline/glue/inline_plaquette.cc: Removed the debugging print statements. 2007-09-27 00:04 kostas * lib/actions/ferm/invert/syssolver_eigcg_params.h: added list of parameters needed for the eigCG syssolver 2007-09-26 16:45 bjoo * other_libs/sse_wilson_dslash/tests/: Makefile.am, t_dslash.cc, testDecomp.h, testDecomp32bit.cc, testDecompHvv.h, testDecompHvv32bit.cc: Added sitewise decomp and decomphvv tests 2007-09-26 16:44 bjoo * other_libs/sse_wilson_dslash/lib/: Makefile.am, decomp_32bit_parscalar.c, decomp_hvv_32bit_parscalar.c, sse_su3dslash_32bit_parscalar.c: The assembly bits using intrinsics 2007-09-26 16:43 bjoo * other_libs/sse_wilson_dslash/include/: Makefile.am, decomp.h, decomp_hvv.h, sse32.h, types32.h: Added headers for decomp stuff 2007-09-25 22:50 kostas * lib/actions/ferm/invert/: chroma_lapack.h, lapack_wrapper.cc, lapack_wrapper.h: the lapack bits 2007-09-25 22:46 kostas * lib/actions/ferm/invert/: containers.h, inv_eigcg2_driver.cc, simpleGramSchmidt.cc, simpleGramSchmidt.h: The logic for the refinement and deflation 2007-09-25 17:17 edwards * lib/actions/ferm/invert/: inv_eigcg2.cc, inv_eigcg2.h, syssolver_eigcg_params.cc, syssolver_eigcg_params.h, syssolver_linop_eigcg.cc, syssolver_linop_eigcg.h: First pass at inserting code for a eigenvector accelerated CG2. 2007-09-25 16:24 bjoo * other_libs/sse_wilson_dslash/: configure, include/shift_tables_parscalar.h, lib/shift_tables_parscalar.c, lib/sse_su3dslash_32bit_parscalar.c, lib/sse_su3dslash_64bit_parscalar.c, tests/t_dslash.cc: Went back to the old crappy wayof dealing with the bounds and it now works again. SO I must be doing something wrong and all these bounds are probably needed to get the comms right 2007-09-25 15:45 bjoo * other_libs/sse_wilson_dslash/lib/shift_tables_parscalar.c: Malloced the wrong size here by accident 2007-09-23 11:42 edwards * lib/meas/inline/io/default_gauge_field.cc: Removed unneeded XMLBufferWriter in "set". 2007-09-22 11:42 edwards * lib/meas/inline/glue/inline_plaquette.cc: Removed some unneeded debugging. 2007-09-21 21:34 edwards * tests/chroma/hadron/seqsource/seqsource-baryon.metric.xml: Added more regression checks. 2007-09-21 21:31 edwards * tests/chroma/hadron/seqsource/: seqsource-baryon.out.xml: New regression output. 2007-09-21 21:24 edwards * tests/chroma/hadron/seqsource/seqsource-baryon.ini.xml: New input file. 2007-09-21 21:20 edwards * tests/chroma/hadron/seqsource/seqsource-baryon.ini.pl: Added new NUCL_NUCL_{U,D} seqsources. 2007-09-21 21:19 edwards * lib/meas/inline/glue/inline_plaquette.cc: Split out extraction of gauge_xml to check for possible errors. 2007-09-21 21:19 edwards * lib/named_obj.h: Added check on creation of new NamedObject to see if there was a failure. 2007-09-21 15:12 bjoo * other_libs/sse_wilson_dslash/: lib/sse_su3dslash_64bit_parscalar.c, tests/Makefile.am: Cleaned out spurious stuff from 64 bit parscalar. 2007-09-21 13:19 bjoo * other_libs/sse_wilson_dslash/: configure, configure.ac, include/Makefile.am, include/dispatch_parscalar.h, include/dispatch_scalar.h, include/shift_tables_parscalar.h, include/shift_tables_scalar.h, include/sse_config_internal.h.in, include/types32.h, include/types64.h, lib/Makefile.am, lib/dispatch_parscalar.c, lib/dispatch_scalar.c, lib/shift_tables_parscalar.c, lib/shift_tables_scalar.c, lib/sse_su3dslash_32bit_parscalar.c, lib/sse_su3dslash_32bit_scalar.c, lib/sse_su3dslash_64bit_parscalar.c, lib/sse_su3dslash_64bit_scalar.c: Commit it 2007-09-21 07:42 edwards * lib/meas/inline/glue/inline_plaquette.cc: Added another debugging line. 2007-09-21 07:31 edwards * lib/meas/inline/glue/inline_plaquette.cc: Added some more debugging output. 2007-09-21 01:08 edwards * lib/meas/hadron/simple_baryon_seqsrc_w.cc: Fixed SpinMatTsp_t reader. 2007-09-21 00:38 edwards * lib/meas/inline/glue/inline_plaquette.cc, lib/meas/inline/glue/inline_plaquette.h, mainprogs/main/chroma.cc, mainprogs/main/hmc.cc, mainprogs/main/purgaug.cc: Moved inline plaquette code into its own namespace. Made main code catch-es, in some case, print all nodes of info. 2007-09-20 16:15 kostas * lib/meas/inline/hadron/: inline_stoch_hadron_w.cc, inline_stoch_hadron_w.h: a little bit more... 2007-09-20 16:05 bjoo * other_libs/sse_wilson_dslash/: include/shift_tables_parscalar.h, lib/shift_tables_parscalar.c, tests/Makefile.am, tests/testDslashFull.cc: OK! Cleaned out the 32bit parscalar stuff. Moved the offset tables out to shift_tables.c 2007-09-20 15:19 edwards * lib/meas/inline/glue/inline_plaquette.cc: Fixed tetst of cgs pointer check. 2007-09-20 15:16 edwards * lib/meas/inline/glue/inline_plaquette.cc: Put namespace qualification on "name". 2007-09-20 15:11 edwards * mainprogs/main/: chroma.cc, hmc.cc, purgaug.cc: Added a std::bad_alloc catch. 2007-09-20 15:08 edwards * lib/meas/inline/glue/inline_plaquette.cc: Put in some debugging comments. 2007-09-20 11:25 bjoo * other_libs/sse_wilson_dslash/lib/: shift_tables_parscalar.c, sse_su3dslash_32bit_parscalar.c: Appears to work. Moved to offset model 2007-09-18 23:42 kostas * lib/meas/inline/hadron/inline_stoch_hadron_w.cc: baryon operator data structure finished... 2007-09-18 16:47 kostas * lib/meas/inline/hadron/: inline_stoch_hadron_w.cc, inline_stoch_hadron_w.h: incremental improvement... long way to go. 2007-09-18 16:19 bjoo * other_libs/sse_wilson_dslash/lib/sse_su3dslash_32bit_parscalar.c: Parscalar single cleanup finished for now 2007-09-18 15:33 bjoo * other_libs/sse_wilson_dslash/lib/sse_su3dslash_32bit_parscalar.c: Working 2007-09-18 15:25 bjoo * other_libs/sse_wilson_dslash/lib/sse_su3dslash_32bit_parscalar.c: Working 2007-09-18 13:20 bjoo * other_libs/sse_wilson_dslash/include/Makefile.am: Started parscalar cleanup 2007-09-18 13:20 bjoo * other_libs/sse_wilson_dslash/: lib/sse_su3dslash_32bit_parscalar.c, lib/shift_tables_parscalar.c, include/shift_tables_parscalar.h: SSE SU3DSLASH Parscalar cleanup 2007-09-14 22:39 kostas * lib/meas/inline/hadron/: inline_stoch_hadron_w.cc, inline_stoch_hadron_w.h: fixed IO 2007-09-14 16:43 kostas * lib/meas/inline/hadron/: inline_stoch_hadron_w.cc, inline_stoch_hadron_w.h: added the Stoch QQQ and QQbar 2007-09-14 15:33 bjoo * other_libs/sse_wilson_dslash/tests/: t_dslash.cc, testDslashFull.cc: OK I cleaned out the 32 and 64 bit scalar codes. Still uses inline asm but more readable. 2007-09-14 15:32 bjoo * other_libs/sse_wilson_dslash/include/: Makefile.am, shift_tables_scalar.h: Shift table scalar cleaned up I hope 2007-09-14 15:32 bjoo * other_libs/sse_wilson_dslash/lib/: shift_tables_scalar.c, sse_su3dslash_32bit_scalar.c, sse_su3dslash_64bit_scalar.c: Scalar stuff cleaned up I hope 2007-09-13 09:52 bjoo * other_libs/sse_wilson_dslash/: configure, configure.ac, include/sse_config_internal.h.in, lib/sse_su3dslash_64bit_parscalar.c: Cleaned out all the ifdefs relating to processor - DP4 - SZIN - DSZIN - and SSE and SSE2. I removed SSE and left the SSE2 case 2007-09-12 17:00 bjoo * other_libs/sse_wilson_dslash/lib/: sse_su3dslash_32bit_parscalar.c, sse_su3dslash_32bit_scalar.c, sse_su3dslash_64bit_scalar.c: Removed lots of ifdefs reduce to -DP4 -DSZIN -DSSE2. Need to finish of 64 bit parscalar piece 2007-09-12 16:29 bjoo * other_libs/sse_wilson_dslash/include/: sse32.h, sse64.h, sse_align.h: Removed P4 SZIN and SSE and SSE2 references. This is now SSE2 clean 2007-09-12 15:47 bjoo * other_libs/sse_wilson_dslash/: AUTHORS, COPYING, NEWS, tests/testDslashFull.cc, tests/unittest.h: Works for scalar, parscalar-single, scalar-double, parscalar-sibgle-double QDP builds on a 4488 lattice 2007-09-12 15:33 bjoo * other_libs/sse_wilson_dslash/: AUTHORS, COPYING, INSTALL, Makefile.am, NEWS, README, acinclude.m4, aclocal.m4, configure, configure.ac, config/config.guess, config/config.sub, config/depcomp, config/install-sh, config/missing, include/Makefile.am, include/sse32.h, include/sse64.h, include/sse_align.h, include/sse_config.h, include/sse_config_internal.h.in, include/sse_dslash.h, include/sse_dslash_qdp_packer.h, lib/Makefile.am, lib/packer_nopad.c, lib/packer_p4_pad.c, lib/qdp_packer_nopad.cc, lib/qdp_packer_p4_pad.cc, lib/shift_tables_parscalar.c, lib/shift_tables_scalar.c, lib/sse_su3dslash_32bit_parscalar.c, lib/sse_su3dslash_32bit_scalar.c, lib/sse_su3dslash_64bit_parscalar.c, lib/sse_su3dslash_64bit_scalar.c, tests/Makefile.am, tests/dslashm_w.cc, tests/dslashm_w.h, tests/reunit.cc, tests/reunit.h, tests/t_dslash.cc, tests/testDslashFull.cc, tests/testDslashFull.h, tests/unittest.h: Initial revision 2007-09-12 15:33 bjoo * other_libs/sse_wilson_dslash/: AUTHORS, COPYING, INSTALL, Makefile.am, NEWS, README, acinclude.m4, aclocal.m4, configure, configure.ac, config/config.guess, config/config.sub, config/depcomp, config/install-sh, config/missing, include/Makefile.am, include/sse32.h, include/sse64.h, include/sse_align.h, include/sse_config.h, include/sse_config_internal.h.in, include/sse_dslash.h, include/sse_dslash_qdp_packer.h, lib/Makefile.am, lib/packer_nopad.c, lib/packer_p4_pad.c, lib/qdp_packer_nopad.cc, lib/qdp_packer_p4_pad.cc, lib/shift_tables_parscalar.c, lib/shift_tables_scalar.c, lib/sse_su3dslash_32bit_parscalar.c, lib/sse_su3dslash_32bit_scalar.c, lib/sse_su3dslash_64bit_parscalar.c, lib/sse_su3dslash_64bit_scalar.c, tests/Makefile.am, tests/dslashm_w.cc, tests/dslashm_w.h, tests/reunit.cc, tests/reunit.h, tests/t_dslash.cc, tests/testDslashFull.cc, tests/testDslashFull.h, tests/unittest.h: New Dslash Package 2007-09-12 10:11 tag chroma3-24-3 2007-09-12 10:11 bjoo * NEWS, aclocal.m4, configure, configure.ac: Preparation for version 3.24.3 2007-09-07 09:23 tag root_ks_scalar_kilcup 2007-09-07 09:23 edwards * scripts/regenerate.csh: Added an error check for regression generation. 2007-09-02 16:45 edwards * tests/chroma/hadron/building_blocks/: bb-baryon.metric.xml, bb-deriv.metric.xml: Changed tolerance to 1.0e-5 2007-09-02 16:41 edwards * tests/chroma/glue/wilslp/wilslp.metric.xml: Changed tolerance to 2.0e-5. 2007-09-01 22:58 edwards * aclocal.m4, configure: Induced changes 2007-09-01 22:57 edwards * configure.ac: Added more stuff for 7n_mpirun_rsh test case runner. 2007-09-01 22:51 edwards * aclocal.m4, configure: Induced changes 2007-09-01 22:51 edwards * configure.ac: Added 7n_mpirun_rsh as a test case runner. 2007-09-01 19:51 uid3790 * scripts/test_runners/7n_mpirun_rsh_runner.sh.in: 7n runner. 2007-09-01 19:44 uid3790 * lib/actions/ferm/linop/: dwffld_w.cc, eoprec_nef_general_linop_array_w.cc, eoprec_nef_linop_array_w.cc, eoprec_ovdwf_linop_array_w.cc, eoprec_ovext_linop_array_w.cc, eoprec_ovlap_contfrac5d_linop_array_opt_w.cc, eoprec_ovlap_contfrac5d_pv_linop_array_w.cc, lwldslash_qdpopt_w.cc: Removed some extraneous semi-colons. 2007-09-01 19:43 uid3790 * lib/actions/ferm/linop/: fat7_links_s.cc, improvement_terms_s.h: Added some doxygen comments. 2007-09-01 19:34 uid3790 * lib/actions/ferm/linop/lwldslash_qdpopt_w.cc: Moved around where "ff" is defined. 2007-09-01 19:29 edwards * lib/actions/ferm/linop/: overlapbu_linop_w.cc, overlapbu_linop_w.h: Removed since not used. 2007-09-01 19:29 edwards * lib/actions/ferm/linop/linop_w.h: Removed overlapbu_linop. 2007-09-01 18:38 edwards * aclocal.m4: Induced changes 2007-09-01 18:35 edwards * lib/Makefile.am: Removed overlapbu_linop_w.{h,cc} since they are not used. 2007-09-01 14:53 edwards * lib/actions/ferm/linop/: asq_dsl_s.h, asqtad_dslash.h: Put in some doxygen comments. 2007-08-31 08:47 bjoo * aclocal.m4, chroma-config.in, configure, configure.ac: Fixed config script for cg-dwf I hope 2007-08-30 23:33 edwards * lib/actions/ferm/fermbcs/simple_fermbc.cc: Put in a check on length of "boundary". 2007-08-30 23:30 edwards * lib/io/qprop_io.cc: Put in a check on "boundary" length. 2007-08-30 13:36 edwards * lib/actions/ferm/linop/clover_term_qdp_w.cc: Removed some unused bits of code. 2007-08-30 13:28 edwards * lib/actions/ferm/linop/clover_term_qdp_w.cc: Changed warning comment again. 2007-08-30 13:27 edwards * lib/actions/ferm/linop/clover_term_qdp_w.cc: Improved warning comment. 2007-08-29 09:50 edwards * lib/actions/ferm/linop/clover_term_qdp_w.cc: Slight rearrangements of output and some bits of code. 2007-08-29 09:34 edwards * lib/actions/ferm/linop/clover_term_qdp_w.cc: Changed slightly some strings in the error exit cases. 2007-08-29 09:31 edwards * lib/util/gauge/: expmat.cc, su2extract.cc, sunfill.cc: Changed QDP_error_exit to the usual QDPIO::cerr,abort. 2007-08-29 09:15 edwards * lib/util/gauge/eeu1.cc: Changed error string. 2007-08-29 09:14 edwards * lib/util/gauge/eesu2.cc: Fixed error check. 2007-08-28 13:51 edwards * tests/chroma/schrfun/schrfun-hadspec.metric.xml: Fixed paths again. 2007-08-28 13:50 edwards * tests/chroma/schrfun/schrfun-hadspec.metric.xml: Changed paths. 2007-08-28 13:44 edwards * tests/chroma/schrfun/: schrfun-hadspec.ini.xml, schrfun-hadspec.out.xml: Updated regression. 2007-08-28 13:24 uid3790 * tests/chroma/schrfun/regres.pl: Inserted missing comma. 2007-08-28 00:56 uid3790 * lib/meas/inline/hadron/inline_hadspec_w.cc: Changed slightly a diagnostic warning message. 2007-08-27 19:02 edwards * tests/chroma/schrfun/: schrfun-hadspec.out.xml, schrfun-pcac.out.xml: Updated. 2007-08-27 18:53 edwards * tests/chroma/schrfun/: regres.pl, schrfun-pcac.ini.xml, schrfun-pcac.metric.xml, schrfun-pcac.out.xml, schrfun.ini.xml, schrfun.metric.xml, schrfun.out.xml: Moved schrfun.* to schrfun-pcac.* 2007-08-27 18:51 edwards * tests/chroma/schrfun/schrfun-hadspec.metric.xml: Metric for hadspec with SF sources. 2007-08-27 18:47 edwards * tests/chroma/schrfun/regres.pl: Added schrfun-hadspec 2007-08-27 17:42 edwards * tests/chroma/schrfun/: schrfun-hadspec.ini.xml, schrfun-hadspec.out.xml, schrfun.ini.xml, schrfun.out.xml: Updated regression tests. 2007-08-27 17:22 edwards * lib/meas/inline/hadron/inline_hadspec_w.cc: Now support SF_{POINT,SHELL,WALL}_SOURCE 2007-08-27 17:19 edwards * lib/meas/inline/hadron/inline_hadspec_w.cc: Changed to only set BC if boundary is actually found. 2007-08-27 17:19 edwards * lib/meas/sources/: sf_pt_source_const.cc, sf_pt_source_const.h, sf_sh_source_const.cc, sf_sh_source_const.h, sf_wall_source_const.cc, sf_wall_source_const.h: Added fermbc to input. Added catch of bad_cast. 2007-08-27 17:18 edwards * lib/meas/sinks/: wall_sink_smearing.cc, wall_sink_smearing.h: New wall sink smearing. 2007-08-27 17:17 edwards * lib/io/qprop_io.cc: Made getFermActBoundary throw an error and NOT exit if boundary is not found. 2007-08-27 17:17 edwards * lib/Makefile.am: Added wall_sink_smearing. 2007-08-27 17:04 edwards * lib/meas/inline/hadron/inline_qqbar_w.cc: Removed searching for boundary. 2007-08-27 17:03 edwards * lib/meas/inline/hadron/inline_mesonspec_w.cc: Removed searching for BC. 2007-08-27 16:17 uid3790 * lib/meas/schrfun/: sf_pt_source_const.cc, sf_pt_source_const.h, sf_sh_source_const.cc, sf_sh_source_const.h, sf_source_const_aggregate.cc, sf_source_const_aggregate.h, sf_source_const_factory.h, sf_source_construction.h, sf_wall_source_const.cc, sf_wall_source_const.h: No longer used - been absorbed into chroma/lib/meas/sources. 2007-08-27 16:10 uid3790 * tests/chroma/schrfun/: schrfun-hadspec.ini.xml, schrfun-hadspec.out.xml, schrfun.ini.xml, schrfun.out.xml: Updated tests. 2007-08-27 16:07 uid3790 * lib/meas/schrfun/sfpcac_w.cc: Added debugging output for forward propagator. 2007-08-27 16:06 uid3790 * lib/util/gauge/: sf_gauge_init.cc, sf_gauge_init.h: Changed sf_gauge_init to go through GaugeState mechanisms. 2007-08-27 16:06 uid3790 * lib/meas/smear/link_smearing_aggregate.cc: Changed explicit path to LinkSmearing. 2007-08-27 16:05 uid3790 * lib/meas/sinks/: wall_sink_smearing.cc, wall_sink_smearing.h: New wall sinks. 2007-08-27 16:05 uid3790 * lib/Makefile.am: Moved schrfun sources to canonical source directory. They are now SF_SHELL_SOURCE kind of thingies like their cousins SHELL_SOURCE. 2007-08-27 16:04 uid3790 * lib/meas/sources/: sf_pt_source_const.cc, sf_pt_source_const.h, sf_sh_source_const.cc, sf_sh_source_const.h, sf_wall_source_const.cc, sf_wall_source_const.h, source_const_aggregate.cc: New sources. 2007-08-27 16:03 uid3790 * lib/meas/sources/pt_source_const.cc: Removed explicit paths. 2007-08-27 16:03 uid3790 * lib/meas/sources/sh_source_const.cc: Removed commented-out explicit paths. 2007-08-27 16:02 uid3790 * lib/meas/sources/wall_source_const.cc: Write out source type. 2007-08-27 16:02 uid3790 * lib/meas/sinks/: pt_sink_smearing.cc, sh_sink_smearing.cc: Got rid of explicit paths to sub-param groups. 2007-08-27 16:00 uid3790 * lib/meas/inline/: glue/inline_apply_gaugestate.cc, glue/inline_apply_gaugestate.h, hadron/inline_apply_fermstate_w.cc, hadron/inline_apply_fermstate_w.h: Moved params struct and inlinemeas to live inside the Env. namespace. 2007-08-27 14:24 edwards * lib/actions/ferm/linop/unprec_dwftransf_linop_w.cc: Removed explicit tag. 2007-08-27 14:18 edwards * lib/actions/ferm/invert/: invcg2.cc, invcg2.h, invcg2_array.cc, invcg2_array.h: Made single and double precision versions explicit. 2007-08-27 13:52 bjoo * lib/actions/ferm/invert/invcg2_array.h: Ooopsie 2007-08-27 10:41 bjoo * lib/actions/ferm/invert/invcg2_array.cc: Invcg2_array.cc 2007-08-25 00:56 edwards * lib/meas/smear/quark_displacement_aggregate.cc: Made path explicit. 2007-08-25 00:54 edwards * lib/meas/smear/quark_smearing_aggregate.cc: Needs an explicit path in ".path" in null group. 2007-08-25 00:51 edwards * lib/meas/smear/quark_smearing_aggregate.cc: Added a path. 2007-08-25 00:51 edwards * lib/meas/smear/quark_displacement_aggregate.cc: Fixed (I think) a path. 2007-08-25 00:49 edwards * lib/meas/smear/quark_displacement_aggregate.cc: Set the path for null group. 2007-08-25 00:37 edwards * lib/meas/sources/: pt_source_const.cc, sh_source_const.cc: Initialize version 1 to have null Displacement group. 2007-08-25 00:09 edwards * lib/Makefile.am: Added sf_{pt,sh,wall}_source_const.* and factories. New sources for Schroedinger functional. 2007-08-25 00:07 edwards * lib/meas/schrfun/: sf_pt_source_const.cc, sf_pt_source_const.h, sf_sh_source_const.cc, sf_sh_source_const.h, sf_source_const_aggregate.cc, sf_source_const_aggregate.h, sf_source_const_factory.h, sf_source_construction.h, sf_wall_source_const.cc, sf_wall_source_const.h: New sources for Schroedinger Functional. 2007-08-25 00:02 edwards * lib/meas/sources/: pt_source_const.cc, pt_source_smearing.cc, sh_source_const.cc, sh_source_smearing.cc: Replaced explict path by XMLGroup_t.path 2007-08-24 16:58 edwards * tests/chroma/schrfun/: schrfun.ini.xml, schrfun.out.xml: Removed some commented out xml. 2007-08-24 16:03 nilmani * PBS/spectrum/scripts/run_qqqdiquark_fly.pl: This perl script do qqq construction and do not write diquark in disk : Nilmani, Aug 24, 2007 2007-08-24 16:01 nilmani * PBS/spectrum/bin/parse_baryons_qqqdiquark_fly.pl: This perl script construct diquark and use that to do qqq contraction : Nilmani Aug 24, 2007 2007-08-24 15:23 edwards * lib/meas/schrfun/: schrfun.h, sfcorr_w.cc, sfcorr_w.h, sfcurcor_w.cc, sfcurcor_w.h, sfcurrents_w.cc, sfcurrents_w.h, sfpcac_w.cc, sfpcac_w.h: Split off Z_A and Z_V measurements into their own separate routines and files. Renamed sfcurcor to sfcorr. 2007-08-24 15:22 edwards * lib/Makefile.am: Added replaced sfcurcor_w with sfcorr_w and sfcurrents_w 2007-08-23 21:30 edwards * tests/chroma/hadron/stoch_group_baryon/create_chroma_xml_small_eo.pl: Generates input file for stoch_group_baryon. 2007-08-23 19:27 edwards * tests/chroma/: eig/eigbnds.out.xml, eig/ritz_Hw-v1.out.xml, gfix/coulgauge/coulgauge.out.xml, glue/fuzwilp/fuzwilp.out.xml, glue/gaugestate/gaugestate.out.xml, glue/wilslp/wilslp.out.xml, hadron/bar3ptfn/bar3ptfn.out.xml, hadron/building_blocks/bb-baryon.out.xml, hadron/building_blocks/bb-deriv.out.xml, hadron/building_blocks/bb-meson.out.xml, hadron/fermstate/fermstate.out.xml, hadron/hadron_contract/meson_2pt/meson_2pt.out.xml, hadron/hadron_contract/stoch_condensates/stoch_condensates.out.xml, hadron/hadspec/hadspec.out.xml, hadron/make_source/dilute.out.xml, hadron/make_source/make_source.out.xml, hadron/make_source/source-deriv.out.xml, hadron/make_source/source-displace.out.xml, hadron/mesonspec/mesonspec.out.xml, hadron/mres/mres.out.xml, hadron/noisy_building_blocks/nbb.out.xml, hadron/propagator/eo3dprec_s_cprec_t_clover.out.xml, hadron/propagator/eo3dprec_s_cprec_t_wilson.out.xml, hadron/propagator/iluprec_s_cprec_t_clover.bicgstab.out.xml, hadron/propagator/iluprec_s_cprec_t_clover.out.xml, hadron/propagator/iluprec_s_cprec_t_wilson.out.xml, hadron/propagator/prec_clover-stout3d.bicgstab.out.xml, hadron/propagator/prec_clover-stout3d.mr.out.xml, hadron/propagator/prec_clover-stout3d.out.xml, hadron/propagator/prec_clover.out.xml, hadron/propagator/prec_dwf.out.xml, hadron/propagator/prec_ht_contfrac5d.out.xml, hadron/propagator/prec_ovext.out.xml, hadron/propagator/prec_ovlap_contfrac5d.out.xml, hadron/propagator/prec_parwilson.out.xml, hadron/propagator/prec_wilson-smearing.out.xml, hadron/propagator/prec_wilson-twisted.out.xml, hadron/propagator/prec_wilson.ferm.out.xml, hadron/propagator/prec_wilson.out.xml, hadron/propagator/prec_zolo_nef.out.xml, hadron/propagator/unprec-ovlap-zolo4d.out.xml, hadron/propagator/unprec-zolo-ev-multi.out.xml, hadron/propagator/unprec_clover.out.xml, hadron/propagator/unprec_dwftransf.out.xml, hadron/propagator/unprec_hamberwu.out.xml, hadron/propagator/unprec_ovext.out.xml, hadron/propagator/unprec_ovlap_contfrac5d.out.xml, hadron/propagator/unprec_s_cprec_t_wilson.out.xml, hadron/propagator/unprec_wilson.out.xml, hadron/propagator/unprec_zolo_nef.out.xml, hadron/qqq/qqdiquark.out.xml, hadron/qqq/qqq.out.xml, hadron/qqqNucNuc/qqqNucNuc.out.xml, hadron/seqsource/seqsource-baryon.out.xml, hadron/seqsource/seqsource-derivmeson.out.xml, hadron/seqsource/seqsource-meson.out.xml, hadron/seqsource/seqsource-photon.out.xml, hadron/sink_smear/sink-deriv.out.xml, hadron/sink_smear/sink-displace.out.xml, hadron/sink_smear/sink_smearing.out.xml, hadron/static_light/static_light.out.xml, hadron/static_light/static_light_pot.out.xml, hadron/stoch_baryon/stoch_baryon.out.xml, hadron/stoch_meson/stoch_meson.out.xml, hadron_s/make_source/make_source_s.out.xml, hadron_s/propagator/asqtad.out.xml, hadron_s/propagator/klein_gordon.out.xml, hadron_s/sink_smear/sink_smearing_s.out.xml, io/nersc_read_obj/nersc_read_obj.out.xml, io/nersc_write_obj/nersc_write_obj.out.xml, io/qio_read_obj/qio_read_obj.out.xml, io/qio_write_obj/qio_write_obj.out.xml, io/szin_read_obj/szin_read_obj.out.xml, io/szin_write_obj/szin_write_obj.out.xml, schrfun/schrfun.out.xml, smear/link_smear/link_smear.out.xml: New regression output to match removal of StateInfo from various inline tasks. 2007-08-23 17:28 edwards * lib/util/ft/sftmom.cc: Bug fix. Removed some invalid uses of resize within a multi2d. 2007-08-23 16:11 edwards * scripts/regenerate.csh: Added a missing quote. 2007-08-23 16:07 edwards * scripts/regenerate.csh: Added check of arguments. 2007-08-23 15:02 edwards * lib/meas/schrfun/: sfcurcor_w.cc, sfcurcor_w.h, sfpcac_w.cc, sfpcac_w.h: Some code cleanups. 2007-08-23 15:02 edwards * lib/meas/inline/: eig/inline_ritz_H_w.cc, eig/inline_ritz_H_w.h, hadron/inline_mesonspec_w.cc, hadron/inline_propagator_ferm_w.cc, hadron/inline_propagator_ferm_w.h, hadron/inline_propagator_w.cc, hadron/inline_propagator_w.h, schrfun/inline_sfpcac_w.cc, schrfun/inline_sfpcac_w.h, smear/inline_link_smear.cc: Cleaned up paths to the XMLGroup objects. 2007-08-23 14:51 tag chroma3-24-2 2007-08-23 14:51 edwards * NEWS: Info on 3.24.2 2007-08-23 14:49 edwards * aclocal.m4, configure: Induced changes 2007-08-23 14:47 edwards * configure.ac: Changed to 3.24.2 2007-08-22 00:14 edwards * scripts/test_runners/mpirun_rsh_runner.sh.in: Changed to run on 4 cores instead of 2. 2007-08-19 17:26 uid3790 * mainprogs/main/hmc.cc: Added pops before exit of test on num production updates. 2007-08-19 17:21 uid3790 * mainprogs/main/hmc.cc: Put in check of start number. 2007-08-16 16:41 edwards * lib/actions/ferm/fermbcs/schr_dirich_fermbc_w.cc: Fixed registration name. 2007-08-16 16:38 edwards * lib/actions/: ferm/fermbcs/schr_dirich_fermbc_w.cc, ferm/fermbcs/schr_dirich_fermbc_w.h, gauge/gaugebcs/schr_dirich_gaugebc.cc, gauge/gaugebcs/schr_dirich_gaugebc.h, gauge/gaugebcs/schr_sf_gaugebc.cc: Reimplemented the SF Dirichlet BC case in terms like the reset of the non-perturbative BC chain of code, but simply supplying phases.lower=phases.upper=0 . 2007-08-16 14:48 edwards * lib/actions/gauge/gaugebcs/schr_dirich_gaugebc.cc: Small cleanups. 2007-08-14 12:13 tag chroma3-24-1 2007-08-14 12:13 edwards * NEWS: Info on 3.24.1 2007-08-14 12:09 edwards * aclocal.m4, configure: Induced changes 2007-08-14 12:09 edwards * configure.ac: Changed to 3.24.1 2007-08-13 14:52 edwards * NEWS: Reorged a few dates. 2007-08-13 14:52 edwards * NEWS: Small change. 2007-08-13 14:46 edwards * README: Changed minimal qdp++ version for chroma 3-24-X and above builds. 2007-08-12 16:35 edwards * lib/handle.h: Fix. Bummer, the previous code had a bug. 2007-08-12 15:23 edwards * lib/handle.h: Changed cast() to create a pointer then return a crated handle. 2007-08-12 12:07 edwards * tests/chroma/hadron/hadron_contract/stoch_condensates/stoch_condensates.metric.xml: Removed some stuff. 2007-08-11 22:12 edwards * tests/chroma/hadron/hadron_contract/stoch_condensates/stoch_condensates.metric.xml: Added a metric file for regression testing. 2007-08-11 18:48 edwards * tests/chroma/hadron/hadron_contract/: hadron-meson.ini.xml, hadron-meson.metric.xml, hadron-meson.out.xml, regres.pl, meson_2pt/meson_2pt.ini.xml, meson_2pt/meson_2pt.metric.xml, meson_2pt/meson_2pt.out.xml: Moved around regressions into subdirs. 2007-08-11 18:43 edwards * tests/chroma/hadron/stoch_condensates/: create_chroma_xml_small_eo.pl, stoch_condensates.ini.xml, stoch_condensates.out.xml: Removed. Turned into a HadroContract measurement. 2007-08-11 18:43 edwards * lib/: Makefile.am, meas/hadron/hadron_contract_aggregate.cc, meas/hadron/stoch_cond_cont_w.cc, meas/hadron/stoch_cond_cont_w.h, meas/inline/hadron/inline_hadron_aggregate.cc, meas/inline/hadron/inline_stoch_condensates_w.cc, meas/inline/hadron/inline_stoch_condensates_w.h: Removed inline_stoch_condensates and turned it into a HadronContract measurement. 2007-08-11 18:40 edwards * tests/chroma/hadron/hadron_contract/stoch_condensates/: create_chroma_xml_small_eo.pl, stoch_condensates.ini.xml, stoch_condensates.out.xml: New hadron_contract regressions. 2007-08-10 21:41 edwards * lib/handle.h: Changed operator=() to check on ptr!=p.ptr instead of this != &p . 2007-08-10 17:27 edwards * lib/Makefile.am: Added stoch_condensates.{h,cc} 2007-08-10 17:27 edwards * lib/meas/inline/hadron/: inline_hadron_aggregate.cc, inline_stoch_condensates_w.cc, inline_stoch_condensates_w.h: Added stochastic estimations of chiral condensates. 2007-08-10 17:26 edwards * tests/chroma/hadron/stoch_condensates/: create_chroma_xml_small_eo.pl, stoch_condensates.ini.xml, stoch_condensates.out.xml: New stochastic condensates regression. 2007-08-09 09:38 edwards * mainprogs/tests/t_stout_state.cc: Removed orthog_dir from appearing in StoutFermStateParams. 2007-08-08 22:30 edwards * lib/actions/ferm/fermstates/: stout_fermstate_params.cc, stout_fermstate_params.h: Removed orthog_dir and now only use smear_in_this_dirP. 2007-08-06 22:26 edwards * tests/regres.pl: Re-enabled nersc & szin reader/writer tests. 2007-08-06 17:37 tag chroma3-23-0-patch1-1 2007-08-06 17:37 edwards * aclocal.m4, configure: Induced changes 2007-08-06 17:36 edwards * configure.ac: Changed to 3.23.0.patch1-1 2007-08-06 17:20 edwards * NEWS: Info on 3.23.0-patch1-1 2007-08-06 17:17 edwards * lib/util/ft/sftmom.cc: Removed test for momentum averaging and non-zero source offset. The code works correctly without this test. 2007-08-06 15:18 edwards * tests/regres.pl: Turned off szin and nersc regressions for the moment till they are fixed. 2007-08-03 23:34 edwards * other_libs/intel_sse_wilson_dslash/src/parscalar/shift_tables.c: Cleaned up some more comments. Removed unused variables. 2007-08-03 23:29 edwards * other_libs/intel_sse_wilson_dslash/src/parscalar/shift_tables.c: Fixed up a comment. 2007-08-01 15:33 edwards * lib/util/ft/sftmom.cc: Removed check for origin_offset must be zero in case of momentum averaging. The check is not needed. The phase of the origin is removed in the correct way no matter whether the phases are added together or not. 2007-07-17 15:16 tag chroma3-24-0 2007-07-17 15:16 uid4709 * NEWS: Commit before 3.24.0 release 2007-07-09 11:05 bjoo * lib/actions/ferm/fermstates/: ferm_createstate_reader_s.cc, ferm_createstate_reader_s.h: Removed the registered thingie 2007-06-30 14:18 edwards * tests/chroma/hadron/stoch_group_baryon/Singly_Displaced: Added additional test. 2007-06-26 16:42 bjoo * lib/actions/ferm/linop/: clover_term_bagel_clover.cc, clover_term_bagel_clover.h, clover_term_qdp_w.cc: Added LDAGDL inversion to bagellised clover term. Changed reporting of negative diag elements to any. Passes noarch regressions 2007-06-23 17:44 bjoo * lib/actions/ferm/linop/: clover_term_qdp_w.cc, clover_term_qdp_w.h: Modded these to go with L D Ldag decomp rather than cholesky. Need to retrofit this also to the bagel_clover_term which uses slightly different data structures for the triang term. 2007-06-21 15:18 edwards * lib/meas/inline/hadron/inline_stoch_group_baryon_w.cc: Switched to a subset version of "sft". 2007-06-21 15:18 edwards * lib/meas/smear/: deriv_quark_displacement_w.cc, deriv_quark_displacement_w.h, displace.cc, displace.h: Added "E" and "Laplacian" operators. 2007-06-21 14:18 edwards * lib/util/ft/: sftmom.cc, sftmom.h: Added subset versions of "sft" function. 2007-06-21 12:06 edwards * lib/meas/inline/hadron/: inline_stoch_group_baryon_w.cc, inline_stoch_group_baryon_w.h: Changed CreationOperator to only a single time slice. 2007-06-21 12:05 edwards * tests/chroma/hadron/stoch_group_baryon/: Single_Site, regres.pl, stoch_group_baryon.ini.xml, stoch_group_baryon.metric.xml, stoch_group_baryon.out.xml: New input/output format. 2007-06-21 10:03 edwards * lib/meas/inline/hadron/inline_stoch_group_baryon_w.cc: Removed some debugging. 2007-06-21 09:32 bjoo * lib/actions/ferm/linop/: clover_term_bagel_clover.cc, clover_term_bagel_clover.h: OK! Padded DIAG term to 8 elements and now allocate both the diag and the off_diag with the QDP_allocator in order to ensure good alignment. Size of the Diag array is a mulitple of 16 (8 complexes so at least 16 reals) and the OffDiag itself should have been padded to 16 already too. Seems to work fine on the noarch. Let's see the BG/L 2007-06-20 21:44 edwards * lib/meas/inline/hadron/inline_stoch_group_baryon_w.cc: Bug fix. Now runs. 2007-06-20 21:16 edwards * lib/meas/inline/hadron/: inline_hadron_aggregate.cc, inline_stoch_group_baryon_w.cc, inline_stoch_group_baryon_w.h: Newer mechanism for dilution. 2007-06-20 11:35 egregory * tests/spectrum_s/spectrum_s.metric.xml: I think I fixed the xml path correctly 2007-06-20 11:35 egregory * tests/spectrum_s/spectrum_s.out.xml: some updates 2007-06-20 06:14 egregory * lib/meas/inline/hadron_s/inline_spectrum_s.cc: fixed problem with setting fuzz width. Also put fuzz width and volume source type in the xml output 2007-06-18 21:43 edwards * lib/Makefile.am: Added inline_stoch_group_baryon.{h,cc} 2007-06-18 15:40 edwards * lib/meas/inline/hadron/: inline_stoch_group_baryon_w.cc, inline_stoch_group_baryon_w.h: First version of a dedicated measurement for stochastic group baryon operators. 2007-06-18 15:26 bjoo * aclocal.m4, configure: Remade the autofiles with automake 1.9.2 2007-06-18 15:24 bjoo * acinclude.m4, aclocal.m4, chroma-config.in, configure, configure.ac, lib/Makefile.am, lib/chroma_config_internal.h.in, lib/actions/ferm/linop/clover_term_bagel_clover.cc, lib/actions/ferm/linop/clover_term_bagel_clover.h, lib/actions/ferm/linop/clover_term_w.h, mainprogs/main/Makefile.am, mainprogs/tests/Makefile.am, tests/regres.pl: Checked regressions pass with new QIO. Added autoconf magic for BAGEL Generated Clover Term apply. Passes those regressions too. Robert still has a few things to add and then itll be a new release. 2007-06-16 22:25 bjoo * lib/actions/ferm/linop/: clover_term_bagel_clover.cc, clover_term_bagel_clover.h, clover_term_base_w.h, clover_term_qdp_w.cc, clover_term_qdp_w.h, eoprec_clover_extfield_linop_w.cc, eoprec_clover_linop_w.cc, eoprec_slic_linop_w.cc: Moved working BAGEL Clover term implementation and reinstated QDPCloverTerm 2007-06-16 22:12 bjoo * lib/actions/ferm/linop/: clover_term_bagel_clover.cc, clover_term_bagel_clover.h: First versions work with noarch 2007-06-14 17:09 bjoo * lib/actions/ferm/linop/clover_term_qdp_w.cc: Unrolled this to the level of float ops 2007-06-13 10:14 edwards * tests/chroma/hadron/hadron_contract/regres.pl: New regression for hadron_contract. 2007-06-13 09:53 edwards * tests/regres.pl: New regression test in chroma/hadron/hadron_contract 2007-06-12 14:10 edwards * TODO: Updated laundry list. 2007-06-12 13:56 edwards * tests/chroma/hadron/hadron_contract/: hadron-meson.ini.xml, hadron-meson.metric.xml, hadron-meson.out.xml: Updated input, output and now a matching metric file. 2007-06-12 13:55 edwards * lib/meas/inline/hadron/inline_hadron_contract.cc: Changed around XML group names for output. 2007-06-12 12:11 edwards * tests/chroma/hadron/hadron_contract/: hadron-meson.ini.xml, hadron-meson.metric.xml, hadron-meson.out.xml: First version of run code. 2007-06-12 12:10 edwards * lib/util/ft/: sftmom.cc, sftmom.h: Added a default constructor. 2007-06-12 12:09 edwards * lib/meas/: hadron/hadron_2pt.cc, hadron/hadron_2pt.h, hadron/hadron_contract.cc, hadron/hadron_contract.h, hadron/simple_meson_2pt_w.cc, inline/hadron/inline_hadron_contract.cc: Rearranged the XML output. Now into a XMLBufferWriter instead of a raw string. Also have a XML regression output. 2007-06-12 09:59 edwards * mainprogs/tests/: t_dwflinop.cc, t_io.cc, t_neflinop.cc: Changed BinaryReader/Writer to BinaryFileReader/Writer and TextReader/Writer to TextFileReader/Writer. 2007-06-12 09:57 edwards * mainprogs/main/wallformfac.cc: Changed BinaryWriter to BinaryFileWriter. 2007-06-12 00:43 edwards * lib/util/ft/sftmom.h: Added doxygen comment. 2007-06-12 00:42 edwards * lib/util/ft/sftmom.h: Added a param structure and a general constructor. 2007-06-10 23:27 edwards * lib/meas/inline/hadron/: inline_hadron_contract.cc, inline_hadron_contract.h: Switched to using array XML group reader. 2007-06-10 23:26 edwards * lib/io/: xml_group_reader.cc, xml_group_reader.h: Added multi1d/array reader of GroupXML 2007-06-10 10:49 edwards * lib/meas/: hadron/hadron_2pt.cc, hadron/hadron_2pt.h, hadron/hadron_contract.cc, hadron/hadron_contract.h, hadron/hadron_contract_aggregate.cc, hadron/hadron_contract_aggregate.h, hadron/hadron_contract_factory.h, hadron/simple_baryon_2pt_w.cc, hadron/simple_baryon_2pt_w.h, hadron/simple_meson_2pt_w.cc, hadron/simple_meson_2pt_w.h, inline/hadron/inline_hadron_contract.cc, inline/hadron/inline_hadron_contract.h: New version of HadronContract routines 2007-06-10 10:40 edwards * lib/io/follana_io_s.cc, lib/io/kyugauge_io.cc, lib/io/kyuqprop_io.cc, lib/io/readcppacs.cc, lib/io/readmilc.cc, lib/io/readszin.cc, lib/io/readszinferm_w.cc, lib/io/readszinqprop_w.cc, lib/io/writemilc.cc, lib/io/writeszin.cc, lib/io/writeszinqprop_w.cc, lib/meas/hadron/BuildingBlocks_w.cc, lib/meas/hadron/group_baryon_operator_w.cc, lib/meas/hadron/hadron_2pt.cc, lib/meas/hadron/hadron_2pt.h, lib/meas/hadron/hadron_2pt_aggregate.cc, lib/meas/hadron/hadron_2pt_aggregate.h, lib/meas/hadron/hadron_2pt_factory.h, lib/meas/hadron/hadron_contract.cc, lib/meas/hadron/hadron_contract.h, lib/meas/hadron/hadron_contract_aggregate.cc, lib/meas/hadron/hadron_contract_aggregate.h, lib/meas/hadron/hadron_contract_factory.h, lib/meas/hadron/simple_meson_2pt_w.cc, lib/meas/hadron/simple_meson_2pt_w.h, lib/meas/inline/hadron/inline_bar3ptfn_w.cc, lib/meas/inline/hadron/inline_building_blocks_w.cc, lib/meas/inline/hadron/inline_hadron_2pt_w.cc, lib/meas/inline/hadron/inline_hadron_2pt_w.h, lib/meas/inline/hadron/inline_hadron_aggregate.cc, lib/meas/inline/hadron/inline_hadron_contract.cc, lib/meas/inline/hadron/inline_hadron_contract.h, lib/meas/inline/hadron/inline_noisy_building_blocks_w.cc, mainprogs/main/chroma.cc: Use new QDP classes for Binary{File,Buffer}Reader/Writer and TextFileReader/Writer. 2007-06-10 10:37 edwards * lib/Makefile.am: Removed hadron_2pt files and now have hadron_contract. 2007-06-10 10:36 edwards * aclocal.m4, configure: Induced changes 2007-06-09 18:18 edwards * README: Updated module dependencies. 2007-06-09 18:17 edwards * configure.ac: Changed to 3.24.0 2007-06-07 12:53 bjoo * mainprogs/tests/t_monomial_force.cc: Update this. Longer calibration loop now and I commented out the taproj etc etc etc 2007-06-07 11:44 bjoo * lib/actions/ferm/linop/clover_term_base_w.cc: Fixed a comment 2007-06-07 11:41 bjoo * lib/actions/ferm/linop/: clover_term_base_w.cc, clover_term_base_w.h, eoprec_clover_linop_w.cc, eoprec_clover_linop_w.h: Tuned this a little. I think I saved about 25 percent of the flops in the deriv_loops by combining mu and nu calculations and getting better reuse. However, this ought to have cut comms in a half. 2007-06-06 18:10 bjoo * lib/actions/ferm/linop/: clover_term_base_w.cc, clover_term_base_w.h: Clover term base. modified. Now precompute the trace spin outer products. Points to a place to coalesce code in deriv loops to minimize comms/compute (maximize compute/comms) 2007-06-06 13:33 nilmani * PBS/spectrum/scripts/run_qqqdiquark.pl: 06/05/07 (Nilmani) : script is modified to delete diquarks from memory and write those to disk. This will clear memory. Please check to clear scratch space so that diquarks can be written there 2007-06-05 15:48 bjoo * lib/actions/ferm/linop/: lwldslash_base_array_w.cc, lwldslash_base_w.cc: Recoded this hopefully a little faster 2007-06-01 15:32 edwards * tests/chroma/hadron/qqq/: qqdiquark.ini.xml, qqdiquark.metric.xml, qqdiquark.out.xml: Added a QIO_WRITE and READ step for testing. 2007-06-01 14:54 edwards * lib/meas/inline/io/: qio_read_obj_funcmap.cc, qio_write_obj_funcmap.cc: Added read/write for QQDiquarkContract objects. 2007-06-01 10:32 nilmani * PBS/spectrum/bin/parse_baryons_qqq.pl: 06/01/07 : Nilmani : This perl script is for constructing qqq files necessary to run qqq program : run_qqq.pl 2007-06-01 10:28 nilmani * PBS/spectrum/scripts/run_qqq.pl: 06/01/07 : Nilmani : This perl script is for running qqq program in usual way (not by constructing diquarks). To run tt needs "qqq_prop" and "parse_baryons_qqq.pl" files 2007-06-01 10:25 nilmani * PBS/spectrum/bin/parse_baryons_qqqdiquark.pl: 06/01/07 : Nilmani : This perl script constructs diquark and supply that to run qqq program : run_qqqdiquark.pl 2007-06-01 10:21 nilmani * PBS/spectrum/scripts/run_qqqdiquark.pl: 06/01/07 : Nilmani : This perl script is for running qqq program by using diquarks. Necessary files are qqq_prop and parse_baryons_qqqdiquark.pl 2007-05-31 22:42 edwards * tests/spectrum_s/spectrum_s.out.xml: Regenerated the regression output. 2007-05-31 16:49 bjoo * lib/actions/ferm/linop/clover_term_qdp_w.cc: Moved sitesOnNode call outside loop in makeClov 2007-05-31 16:48 bjoo * lib/update/heatbath/su2_hb_update.cc: Moved the sitesOnNode out of a loop 2007-05-30 16:21 edwards * mainprogs/tests/t_remez.cc: Changed power_den to 2 to match the function that is being tested, namely 1/sqrt(x). 2007-05-30 11:09 egregory * lib/meas/inline/hadron_s/util_compute_singlet_ps.cc: added missing Fuzzedsrc-Fuzzedsink connected pseudoscalar singlet propagator 2007-05-25 17:05 bjoo * mainprogs/tests/t_monomial_force.cc: Fixed oopses 2007-05-25 15:40 bjoo * mainprogs/tests/Makefile.am: t_monomial_force.cc added 2007-05-25 15:40 bjoo * tests/t_monomial_force/monomial_test.ini.xml: monomial_test.ini.xml test file for t_monomial_force 2007-05-25 15:38 bjoo * mainprogs/tests/t_monomial_force.cc: Times monomial forces, expmat, reunit and taproj 2007-05-24 17:01 bjoo * configure: Makefile updates 2007-05-24 16:45 bjoo * aclocal.m4, configure, lib/Makefile.am, lib/actions/gauge/gaugeacts/rect_gaugeact.cc, mainprogs/tests/Makefile.am, mainprogs/tests/t_aniso_sym_force.cc: added unified anisotropic plaq + rectangle action 2007-05-24 15:36 bjoo * lib/actions/gauge/gaugeacts/: aniso_sym_shared_functions.cc, aniso_sym_shared_functions.h, aniso_sym_spatial_gaugeact.cc, aniso_sym_spatial_gaugeact.h, aniso_sym_temporal_gaugeact.cc, aniso_sym_temporal_gaugeact.h, rect_gaugeact.cc: Combiner plaq + rect. Is it any faster?? 2007-05-22 10:51 bjoo * lib/Makefile.am: Makefile.am 2007-05-22 10:50 bjoo * tests/t_leapfrog/regres.pl: Added in the regressions 2007-05-22 10:43 bjoo * tests/t_leapfrog/: t_leapfrog.aniso_sym_spatial_plus_temporal.metric.xml, t_leapfrog.aniso_sym_temporal.ini.xml, t_leapfrog.aniso_sym_temporal.log.xml, t_leapfrog.aniso_sym_temporal.metric.xml: More regressions for aniso actions 2007-05-22 10:41 bjoo * tests/t_leapfrog/: t_leapfrog.aniso_sym_spatial.ini.xml, t_leapfrog.aniso_sym_spatial.log.xml, t_leapfrog.aniso_sym_spatial.metric.xml, t_leapfrog.aniso_sym_spatial_plus_temporal.ini.xml, t_leapfrog.aniso_sym_spatial_plus_temporal.log.xml: XML Files for regressions 2007-05-22 10:19 bjoo * lib/actions/gauge/gaugeacts/: aniso_sym_gaugeact_params.cc, aniso_sym_gaugeact_params.h, aniso_sym_spatial_gaugeact.cc, aniso_sym_spatial_gaugeact.h, aniso_sym_temporal_gaugeact.cc, aniso_sym_temporal_gaugeact.h, gaugeacts_aggregate.cc: Anisotropic Tree level Symanzik improved gauge actions split into spatial and temporal bits 2007-05-21 18:21 bjoo * lib/actions/gauge/gaugeacts/: rect_gaugeact.cc, rect_gaugeact.h: Added derivSpatial and derivTemporal as well as spatialS and temporalS 2007-05-18 16:22 bjoo * lib/central_tprec_linop.h: Added in one variant of Eisenstat Trick 2007-05-17 11:30 egregory * lib/meas/hadron/ks_local_loops.cc: fixed the double-fuzzing in the kilcup trick pseudoscalar loop 2007-05-17 11:29 egregory * lib/meas/hadron/pseudoscalar_loops_s.h: fixed the double-fuzzing problem in the kilcup pseudoscalar 2007-05-17 11:29 egregory * lib/meas/hadron/pseudoscalar_loops_s.cc: fixed the double-fuzzing in the fuzzed kilcup loop pseudoscalar 2007-05-14 09:41 egregory * lib/meas/hadron/ks_local_loops.cc: added fuzzed stochastic connected pseudoscalar correlator for testing 2007-05-14 09:40 egregory * lib/meas/hadron/pseudoscalar_stoch_conn_s.cc: added fuzzed stochastic connected pseudoscalar correlator for testing purposes 2007-05-14 09:38 egregory * lib/meas/: inline/hadron_s/inline_spectrum_s.cc, hadron/ks_local_loops.h, hadron/pseudoscalar_stoch_conn_s.h: added fuzzed stochastic connected pseudoscalar correlator for testing 2007-05-10 22:32 edwards * lib/actions/ferm/invert/invbicgstab.h: Added some doxygen comments. 2007-05-10 13:54 edwards * tests/: regres.pl, chroma/hadron_s/spectrum_s/regres.pl, chroma/hadron_s/spectrum_s/spectrum_s.ini.xml, chroma/hadron_s/spectrum_s/spectrum_s.metric.xml, chroma/hadron_s/spectrum_s/spectrum_s.out.xml: Removed use of inline_spectrum_s from chroma.cc regressions. They are instead only being used by mainprogs/main/spectrum_s.cc 2007-05-10 13:48 edwards * lib/meas/inline/hadron_s/hadron_s.h: Turned back on the include of inline_spectrum_s.h 2007-05-10 13:47 edwards * lib/Makefile.am: Added back in inline_spectrum_s.{h,cc} 2007-05-10 13:46 edwards * lib/meas/inline/hadron_s/inline_spectrum_s.h: Oops, this file really is being used. The confusion on my part is that it is used in mainprogs/main/spectrum_s.cc, but not as an inline in chroma.cc 2007-05-10 13:43 edwards * lib/meas/inline/hadron_s/hadron_s.h: Removed inline spectrum_s 2007-05-09 13:21 edwards * aclocal.m4, configure: Induced changes 2007-05-09 13:19 edwards * lib/: Makefile.am, meas/hadron/baryon_2pt_w.cc, meas/hadron/baryon_2pt_w.h, meas/hadron/hadron_2pt.cc, meas/hadron/hadron_2pt.h, meas/hadron/hadron_2pt_aggregate.cc, meas/hadron/hadron_2pt_aggregate.h, meas/hadron/hadron_2pt_factory.h, meas/hadron/simple_baryon_2pt_w.cc, meas/hadron/simple_baryon_2pt_w.h, meas/hadron/simple_meson_2pt_w.cc, meas/hadron/simple_meson_2pt_w.h, meas/inline/hadron/inline_hadron_2pt_w.cc, meas/inline/hadron/inline_hadron_2pt_w.h, meas/inline/hadron_s/inline_hadron_aggregate_s.cc, meas/inline/hadron_s/inline_spectrum_s.h: Added hadron 2pt routines. 2007-05-09 08:52 mcneile * lib/Makefile.am: I have added source code for HISQ. 2007-05-09 08:51 mcneile * mainprogs/tests/t_propagator_s.cc: Wrapper for HISQ code. 2007-05-09 08:47 mcneile * lib/actions/ferm/linop/: fat7_links_s.cc, improvement_terms_s.h: I have added additional code for the HISQ inverter. 2007-05-09 08:45 mcneile * lib/actions/ferm/qprop/: hisq_qprop.cc, hisq_qprop.h: First pass at adding hisq code to chroma. 2007-05-09 08:43 mcneile * lib/actions/ferm/fermacts/: hisq_fermact_params_s.cc, hisq_fermact_params_s.h, hisq_fermact_s.cc, hisq_fermact_s.h: First pass at adding HISQ to Chroma. 2007-05-03 18:42 kostas * lib/Makefile.am: link in NPR point props 2007-05-03 18:41 kostas * lib/meas/inline/hadron/: inline_npr_w.cc, inline_npr_w.h: npr inline (point props) 2007-05-03 07:29 edwards * tests/regres.pl: Took out inline_spectrum_s 2007-05-01 14:48 dgr * PBS/spectrum/bin/parse_diquark.pl: fixed bug in parse_diquark 2007-05-01 11:27 bjoo * lib/actions/ferm/invert/invmr.cc, lib/actions/ferm/invert/invmr.h, lib/actions/ferm/invert/syssolver_linop_mr.h, tests/chroma/hadron/propagator/prec_clover-stout3d.mr.ini.xml, tests/chroma/hadron/propagator/prec_clover-stout3d.mr.metric.xml, tests/chroma/hadron/propagator/prec_clover-stout3d.mr.out.xml, tests/chroma/hadron/propagator/regres.pl: Added regressions for MR and BiCGStab. Sadly inline_spectrum_s is not working again 2007-05-01 11:06 bjoo * lib/Makefile.am, tests/chroma/hadron/propagator/prec_clover-stout3d.bicgstab.metric.xml, tests/chroma/hadron/propagator/prec_clover-stout3d.bicgstab.out.xml, tests/t_leapfrog/t_leapfrog.prec_wilson.bicgstab.metric.xml: Added BiCGStab Prop calculation 2007-05-01 10:54 bjoo * tests/chroma/hadron/propagator/: prec_clover-stout3d.bicgstab.ini.xml, regres.pl: BICGSTAB Prop 2007-05-01 10:47 bjoo * tests/t_leapfrog/: regres.pl, t_leapfrog.prec_wilson.bicgstab.ini.xml, t_leapfrog.prec_wilson.bicgstab.log.xml: Wilson With BICGSTAB 2007-05-01 10:39 bjoo * lib/actions/ferm/invert/: invmr.cc, invmr.h, syssolver_linop_aggregate.cc, syssolver_linop_mr.h, syssolver_mdagm_aggregate.cc, syssolver_mdagm_bicgstab.cc, syssolver_mdagm_bicgstab.h, syssolver_mr_params.cc, syssolver_mr_params.h: Added MdagM BiCGStab Solver 2007-05-01 09:43 egregory * tests/spectrum_s/spectrum_s.out.xml: fixed double baryon measurement problem 2007-05-01 09:08 egregory * lib/meas/inline/hadron_s/inline_spectrum_s.cc: made fix so local baryons arent run twice 2007-05-01 09:07 bjoo * aclocal.m4, configure, lib/Makefile.am, lib/actions/ferm/invert/syssolver_linop_aggregate.cc, lib/actions/ferm/qprop/central_tprec_fermact_qprop_w.cc: OK ! Makefiles etc. 2007-05-01 08:54 bjoo * tests/chroma/hadron/propagator/: iluprec_s_cprec_t_clover.bicgstab.ini.xml, iluprec_s_cprec_t_clover.bicgstab.metric.xml, iluprec_s_cprec_t_clover.bicgstab.out.xml: Metric files for Tprec ILU BiCGStab 2007-05-01 08:50 bjoo * lib/actions/ferm/invert/: invbicgstab_array.cc, invbicgstab_array.h: Oopsie 2007-05-01 08:47 bjoo * lib/actions/ferm/invert/: invbicgstab.cc, invbicgstab.h, invbicgstab_array.cc, invbicgstab_array.h, syssolver_bicgstab_params.cc, syssolver_bicgstab_params.h, syssolver_linop_bicgstab.cc, syssolver_linop_bicgstab.h: Added syssolver_bicgstab 2007-04-19 10:26 tag chroma3-23-0 2007-04-19 10:26 edwards * NEWS: Info on 3.23.0 2007-04-19 10:23 edwards * aclocal.m4, configure: Induced changes 2007-04-19 10:23 edwards * configure.ac: Changed to 3.23.0 2007-04-19 10:13 edwards * tests/chroma/hadron/hadspec/hadspec.out.xml: New output format. 2007-04-18 17:55 edwards * lib/meas/inline/hadron/inline_hadspec_w.cc: The number of baryons has changed. 2007-04-18 17:53 edwards * lib/meas/hadron/barhqlq_w.cc: Added the negative parity nucleon. 2007-04-17 22:32 edwards * lib/meas/inline/hadron/: inline_bar3ptfn_w.h, inline_building_blocks_w.h, inline_hadron_2pt_w.cc, inline_hadron_2pt_w.h, inline_hadspec_w.h, inline_make_source_ferm_w.h, inline_make_source_w.h, inline_mesonspec_w.h, inline_mres_w.h, inline_multi_propagator_w.h, inline_multipole_w.h, inline_noisy_building_blocks_w.h, inline_npr_vertex_w.h, inline_npr_w.h, inline_propagator_ferm_w.h, inline_qpropadd_w.h, inline_qpropqio_w.h, inline_qqbar_w.h, inline_qqqNucNuc_w.h, inline_sink_smear_w.h, inline_spectrumQll.h, inline_spectrum_w.h, inline_stag_to_wils.h, inline_static_light_spec_w.h: Fixed doxygen comments. 2007-04-16 23:13 edwards * lib/: actions/ferm/fermacts/bigfloat.h, actions/ferm/fermacts/fermacts.h, actions/ferm/fermacts/remez.h, actions/ferm/fermacts/remez_coeff.h, actions/ferm/fermacts/remez_gmp.cc, actions/ferm/fermacts/remez_gmp.h, actions/ferm/fermacts/remez_stub.h, update/molecdyn/monomial/bigfloat.h, update/molecdyn/monomial/genapprox.cc, update/molecdyn/monomial/genapprox.h, update/molecdyn/monomial/monomial.h, update/molecdyn/monomial/one_flavor_rat_monomial5d_w.h, update/molecdyn/monomial/one_flavor_rat_monomial_w.h, update/molecdyn/monomial/remez.h, update/molecdyn/monomial/remez_coeff.h, update/molecdyn/monomial/remez_gmp.cc, update/molecdyn/monomial/remez_gmp.h, update/molecdyn/monomial/remez_stub.h: Moved the bigfloat and remez files from the fermacts dir to the monomial dir. This is anticipation of further factory methods. 2007-04-16 23:11 edwards * lib/Makefile.am: Moved around the bigfloat and remez files from the fermacts dir to the monomial dir. The fermacts dir is way too full. The monomial dir is the right place for this stuff. 2007-04-16 20:56 edwards * aclocal.m4, configure: Induced changes 2007-04-16 20:52 edwards * other_libs/intel_sse_wilson_dslash/: aclocal.m4, configure: Induced changes 2007-04-16 11:55 tag chroma3-22-10 2007-04-16 11:55 bjoo * chroma-config.in: Fixed an oops in chroma-config.in 2007-04-16 11:49 bjoo * aclocal.m4, configure, lib/Makefile.am, mainprogs/main/hmc.cc, tests/hmc/hmc.prec_wilson.ini.xml, tests/hmc/hmc.prec_wilson.log.xml, tests/hmc/hmc.prec_wilson.out.xml, tests/hmc/hmc.prec_wilson_repro.ini.xml, tests/hmc/hmc.prec_wilson_repro.log.xml, tests/hmc/hmc.prec_wilson_repro.metric.xml, tests/hmc/hmc.prec_wilson_repro.out.xml, tests/hmc/regres.pl: OK I fixed the problem with the headers I think and added repro testing to HMC. NERSC reading regression fails 2007-04-14 16:06 edwards * tests/chroma/hadron_s/spectrum_s/: spectrum_s.metric.xml, spectrum_s.out.xml: Updated to new output. 2007-04-14 16:00 edwards * tests/chroma/hadron_s/spectrum_s/: spectrum_s.ini.xml, spectrum_s.out.xml: fixed to new form. 2007-04-14 15:48 edwards * tests/spectrum_s/spectrum_s.metric.xml: Fixed so xmldiff doesn't complain. 2007-04-11 18:10 egregory * tests/spectrum_s/spectrum_s.ini.xml: new fuzzed operator stuff is implemented 2007-04-11 18:09 egregory * tests/spectrum_s/spectrum_s.out.xml: new fuzzed operator stuff implimented 2007-04-11 17:51 egregory * lib/meas/hadron/scalar_loops_s.cc: fixed that unordered set thingie 2007-04-11 17:44 egregory * lib/meas/hadron/scalar_loops_s.cc: put in fuzzed scalar loops 2007-04-11 11:29 egregory * lib/meas/hadron/pion_sing_s.h: added fuzzed operators 2007-04-11 11:23 egregory * lib/meas/hadron/: pseudoscalar_loops_s.cc, pseudoscalar_loops_s.h, scalar_loops_s.h: added fuzzed loops 2007-04-11 11:06 egregory * lib/meas/hadron/: loops_s.h, ks_local_loops.cc: added fuzzed loops 2007-04-11 11:05 egregory * lib/meas/hadron/pion_sing_s.cc: added fuzzed scalar loops 2007-04-11 10:58 egregory * lib/meas/inline/hadron_s/util_compute_singlet_ps.cc: smeared operators for the pseudoscalar singlet meson 2007-04-11 10:57 egregory * lib/meas/inline/hadron_s/util_compute_quark_prop_s.cc: changes for variational meson spectroscopy 2007-04-11 10:57 egregory * lib/meas/inline/hadron_s/inline_spectrum_s.h: changes and fixes related to variational meson spectroscopy` 2007-04-11 10:44 egregory * lib/meas/inline/hadron_s/inline_spectrum_s.cc: added and fixed some variational meson stuff 2007-04-11 00:55 juge * lib/meas/hadron/: baryon_operator.h, group_baryon_operator_w.cc, group_baryon_operator_w.h, simple_baryon_operator_w.h: Removed the extra time loop and added some routines for compatibility. 2007-04-10 23:44 edwards * lib/Makefile.am: Added MR support for multimass and system solvers. 2007-04-10 23:44 edwards * lib/lmdagm.h: Added some doxygen comments and indenting. 2007-04-10 23:43 edwards * lib/ldag.h: First version of a A^dag wrapper. 2007-04-10 23:42 edwards * lib/: actions/ferm/qprop/quarkprop4_s.cc, actions/ferm/qprop/quarkprop4_w.cc, fermact.h, stagtype_fermact_s.h, wilstype_fermact_w.h: Added mInvLinOp functions. 2007-04-10 23:42 edwards * lib/actions/ferm/invert/: syssolver_linop_mr.cc, syssolver_linop_mr.h, syssolver_mdagm_mr.cc, syssolver_mdagm_mr.h, syssolver_mr_params.cc, syssolver_mr_params.h: First versions of system solvers using MR. 2007-04-10 23:41 edwards * lib/actions/ferm/invert/: multi_syssolver_linop.h, multi_syssolver_linop_aggregate.cc, multi_syssolver_linop_aggregate.h, multi_syssolver_linop_factory.h, multi_syssolver_linop_mr.cc, multi_syssolver_linop_mr.h, multi_syssolver_mr_params.cc, multi_syssolver_mr_params.h: First versions of multimass linop solvers. 2007-04-10 23:41 edwards * lib/actions/ferm/invert/: invmr.cc, invmr.h: Updated to new API. 2007-04-10 23:40 edwards * lib/actions/ferm/invert/: minvmr.cc, minvmr.h, minvmr_array.cc: First versions. 2007-04-09 14:41 bjoo * lib/meas/inline/: make_xml_file.cc, glue/inline_plaquette.cc, glue/inline_plaquette.h: Now affix traj number to xmlfile unless it is 0 2007-04-04 16:58 bjoo * lib/actions/ferm/linop/clover_term_base_w.cc: clover force slightly rearranged. 2007-03-30 10:09 edwards * tests/hmc/: hmc.prec_wilson.log.xml, hmc.prec_wilson.out.xml: Updates. 2007-03-30 10:08 edwards * tests/t_leapfrog/: t_leapfrog.aniso_spectrum.log.xml, t_leapfrog.fixed_X_action_stout.log.xml, t_leapfrog.lw.sfnonpt.log.xml, t_leapfrog.parwilson_minimal_norm_2nd_order_integrator_mts.log.xml, t_leapfrog.parwilson_minimal_norm_2nd_order_qpq_integrator_mts.log.xml, t_leapfrog.parwilson_pqp_integrator_mts.log.xml, t_leapfrog.prec_1flav_dwf.log.xml, t_leapfrog.prec_1flav_wilson.log.xml, t_leapfrog.prec_2flav_clover.log.xml, t_leapfrog.prec_2flav_clover.sfnonpt.log.xml, t_leapfrog.prec_2flav_clover_ee_oo.log.xml, t_leapfrog.prec_clover_stout.log.xml, t_leapfrog.prec_contfrac.log.xml, t_leapfrog.prec_dwf.log.xml, t_leapfrog.prec_hasenbusch5d_dwf.log.xml, t_leapfrog.prec_hasenbusch_wilson.log.xml, t_leapfrog.prec_parwilson.log.xml, t_leapfrog.prec_wilson.log.xml, t_leapfrog.rect_gaugeact.log.xml, t_leapfrog.rect_gaugeact_1.log.xml, t_leapfrog.rect_gaugeact_aniso.log.xml, t_leapfrog.rect_gaugeact_c1t0.log.xml, t_leapfrog.rect_gaugeact_omit2linkT.log.xml, t_leapfrog.two_plaq_spatial_gaugeact.log.xml, t_leapfrog.unprec_clover.log.xml, t_leapfrog.unprec_dwf.log.xml, t_leapfrog.unprec_hasenbusch5d_dwf.log.xml, t_leapfrog.unprec_hasenbusch_wilson.log.xml, t_leapfrog.unprec_wilson.log.xml, t_leapfrog.wilson_gaugeact.log.xml, t_leapfrog.wilson_gaugeact_aniso_mom.log.xml, t_leapfrog.wilson_gaugeact_st.log.xml: Changed tag group from "n_count" to "Forces". 2007-03-29 15:35 edwards * lib/update/molecdyn/monomial/two_flavor_hasenbusch_monomial_w.h: Fixed name of group - renamed to "Forces". 2007-03-23 16:41 tag choma3-22-9 2007-03-23 16:41 bjoo * lib/update/molecdyn/integrator/lcm_toplevel_integrator.cc, tests/t_leapfrog/t_leapfrog.wilson_gaugeact_aniso_mom.log.xml: Changed convention to set the dt factor to 1 over xi_mom 2007-03-23 16:21 bjoo * lib/update/molecdyn/integrator/lcm_integrator_leaps.cc, lib/update/molecdyn/integrator/lcm_integrator_leaps.h, lib/update/molecdyn/integrator/lcm_toplevel_integrator.cc, lib/update/molecdyn/integrator/lcm_toplevel_integrator.h, tests/regres.pl, tests/hmc/hmc.prec_wilson.log.xml, tests/t_leapfrog/regres.pl, tests/t_leapfrog/t_leapfrog.aniso_spectrum.log.xml, tests/t_leapfrog/t_leapfrog.fixed_X_action_stout.log.xml, tests/t_leapfrog/t_leapfrog.lw.sfnonpt.log.xml, tests/t_leapfrog/t_leapfrog.parwilson_minimal_norm_2nd_order_integrator_mts.log.xml, tests/t_leapfrog/t_leapfrog.parwilson_minimal_norm_2nd_order_qpq_integrator_mts.log.xml, tests/t_leapfrog/t_leapfrog.parwilson_pqp_integrator_mts.log.xml, tests/t_leapfrog/t_leapfrog.prec_1flav_wilson.log.xml, tests/t_leapfrog/t_leapfrog.prec_2flav_clover.log.xml, tests/t_leapfrog/t_leapfrog.prec_2flav_clover.sfnonpt.log.xml, tests/t_leapfrog/t_leapfrog.prec_2flav_clover_ee_oo.log.xml, tests/t_leapfrog/t_leapfrog.prec_clover_stout.log.xml, tests/t_leapfrog/t_leapfrog.prec_contfrac.log.xml, tests/t_leapfrog/t_leapfrog.prec_dwf.log.xml, tests/t_leapfrog/t_leapfrog.prec_hasenbusch5d_dwf.log.xml, tests/t_leapfrog/t_leapfrog.prec_hasenbusch_wilson.log.xml, tests/t_leapfrog/t_leapfrog.prec_parwilson.log.xml, tests/t_leapfrog/t_leapfrog.prec_wilson.log.xml, tests/t_leapfrog/t_leapfrog.rect_gaugeact.log.xml, tests/t_leapfrog/t_leapfrog.rect_gaugeact_1.log.xml, tests/t_leapfrog/t_leapfrog.rect_gaugeact_aniso.log.xml, tests/t_leapfrog/t_leapfrog.rect_gaugeact_c1t0.log.xml, tests/t_leapfrog/t_leapfrog.rect_gaugeact_omit2linkT.log.xml, tests/t_leapfrog/t_leapfrog.two_plaq_spatial_gaugeact.log.xml, tests/t_leapfrog/t_leapfrog.unprec_clover.log.xml, tests/t_leapfrog/t_leapfrog.unprec_dwf.log.xml, tests/t_leapfrog/t_leapfrog.unprec_hasenbusch5d_dwf.log.xml, tests/t_leapfrog/t_leapfrog.unprec_hasenbusch_wilson.log.xml, tests/t_leapfrog/t_leapfrog.unprec_wilson.log.xml, tests/t_leapfrog/t_leapfrog.wilson_gaugeact.log.xml, tests/t_leapfrog/t_leapfrog.wilson_gaugeact_aniso_mom.ini.xml, tests/t_leapfrog/t_leapfrog.wilson_gaugeact_aniso_mom.log.xml, tests/t_leapfrog/t_leapfrog.wilson_gaugeact_aniso_mom.metric.xml, tests/t_leapfrog/t_leapfrog.wilson_gaugeact_st.log.xml: Added anisotropic momenta. This necessitated having to recheck all the log files 2007-03-23 12:01 bjoo * lib/: actions/gauge/gaugeacts/plaq_gaugeact.cc, update/molecdyn/monomial/force_monitors.cc: Converted force units to those of Jansen et al. Added taproj to force monitoring 2007-03-22 16:22 bjoo * aclocal.m4, configure: Remade Makefile.ins on qcdi machine 2007-03-22 16:20 bjoo * lib/Makefile.am, tests/regres.pl: Added spatial and temporal plaquette actions 2007-03-22 15:52 bjoo * lib/actions/gauge/gaugeacts/: gaugeacts_aggregate.cc, plaq_gaugeact.cc, spatial_wilson_gaugeact.h, wilson_gaugeact_params.cc, wilson_gaugeact_params.h: Appears to work. I have to check the forces tho... 2007-03-22 15:51 bjoo * tests/t_leapfrog/: regres.pl, t_leapfrog.wilson_gaugeact.ini.xml, t_leapfrog.wilson_gaugeact.log.xml, t_leapfrog.wilson_gaugeact.metric.xml, t_leapfrog.wilson_gaugeact_st.ini.xml, t_leapfrog.wilson_gaugeact_st.log.xml, t_leapfrog.wilson_gaugeact_st.metric.xml: Added WIlson gaugeact and split temporal wilson gaugeacts 2007-03-22 15:06 bjoo * lib/actions/gauge/gaugeacts/: plaq_gaugeact.cc, plaq_gaugeact.h, spatial_wilson_gaugeact.cc, spatial_wilson_gaugeact.h, temporal_wilson_gaugeact.cc, temporal_wilson_gaugeact.h, wilson_gaugeact.cc, wilson_gaugeact.h, wilson_gaugeact_params.cc, wilson_gaugeact_params.h: INitial cut 2007-03-22 13:39 bjoo * aclocal.m4, configure, lib/Makefile.am, lib/update/molecdyn/monomial/eoprec_logdet_ee_monomial_w.h, lib/update/molecdyn/monomial/force_calc.cc, lib/update/molecdyn/monomial/force_calc.h, lib/update/molecdyn/monomial/force_monitors.cc, lib/update/molecdyn/monomial/force_monitors.h, lib/update/molecdyn/monomial/gauge_monomial.h, lib/update/molecdyn/monomial/one_flavor_rat_monomial5d_w.h, lib/update/molecdyn/monomial/one_flavor_rat_monomial_w.h, lib/update/molecdyn/monomial/two_flavor_hasenbusch_monomial5d_w.h, lib/update/molecdyn/monomial/two_flavor_hasenbusch_monomial_w.h, lib/update/molecdyn/monomial/two_flavor_monomial5d_w.h, lib/update/molecdyn/monomial/two_flavor_monomial_w.h, lib/update/molecdyn/monomial/two_flavor_polynomial_monomial_w.h, lib/update/molecdyn/monomial/two_flavor_polyprec_monomial_w.h, tests/regres.pl, tests/hmc/hmc.prec_wilson.log.xml, tests/t_leapfrog/t_leapfrog.aniso_spectrum.log.xml, tests/t_leapfrog/t_leapfrog.lw.sfnonpt.log.xml, tests/t_leapfrog/t_leapfrog.parwilson_minimal_norm_2nd_order_integrator_mts.log.xml, tests/t_leapfrog/t_leapfrog.parwilson_minimal_norm_2nd_order_qpq_integrator_mts.log.xml, tests/t_leapfrog/t_leapfrog.parwilson_pqp_integrator_mts.log.xml, tests/t_leapfrog/t_leapfrog.prec_1flav_wilson.log.xml, tests/t_leapfrog/t_leapfrog.prec_2flav_clover.log.xml, tests/t_leapfrog/t_leapfrog.prec_2flav_clover.sfnonpt.log.xml, tests/t_leapfrog/t_leapfrog.prec_2flav_clover_ee_oo.log.xml, tests/t_leapfrog/t_leapfrog.prec_clover_stout.log.xml, tests/t_leapfrog/t_leapfrog.prec_contfrac.log.xml, tests/t_leapfrog/t_leapfrog.prec_dwf.log.xml, tests/t_leapfrog/t_leapfrog.prec_hasenbusch5d_dwf.log.xml, tests/t_leapfrog/t_leapfrog.prec_hasenbusch_wilson.log.xml, tests/t_leapfrog/t_leapfrog.prec_parwilson.log.xml, tests/t_leapfrog/t_leapfrog.prec_wilson.log.xml, tests/t_leapfrog/t_leapfrog.rect_gaugeact.log.xml, tests/t_leapfrog/t_leapfrog.rect_gaugeact_1.log.xml, tests/t_leapfrog/t_leapfrog.rect_gaugeact_aniso.log.xml, tests/t_leapfrog/t_leapfrog.rect_gaugeact_c1t0.log.xml, tests/t_leapfrog/t_leapfrog.rect_gaugeact_omit2linkT.log.xml, tests/t_leapfrog/t_leapfrog.two_plaq_spatial_gaugeact.log.xml, tests/t_leapfrog/t_leapfrog.unprec_clover.log.xml, tests/t_leapfrog/t_leapfrog.unprec_dwf.log.xml, tests/t_leapfrog/t_leapfrog.unprec_hasenbusch5d_dwf.log.xml, tests/t_leapfrog/t_leapfrog.unprec_hasenbusch_wilson.log.xml, tests/t_leapfrog/t_leapfrog.unprec_wilson.log.xml: Reworked Force monitoring - had to update regressions. latter part was annoyingly laborious as I had to check some through 2007-03-20 09:44 tag chroma3-22-8 2007-03-20 09:44 bjoo * lib/actions/gauge/gaugeacts/wilson_gaugeact.h: Added fix to wilson_gaugeact for Jacques. Regressions pass on parscalar single. Release candidate 2007-03-18 17:59 edwards * lib/meas/inline/glue/: inline_wilslp.cc, inline_wilslp.h: Added a xml_file indirection. 2007-03-18 17:58 edwards * lib/meas/inline/hadron/inline_propagator_w.h: Changed doxygen comment. 2007-03-16 18:08 bjoo * lib/actions/ferm/linop/eo3dprec_s_cprec_t_clover_linop_w.h: Oopsie 2007-03-16 17:23 bjoo * lib/actions/ferm/linop/eo3dprec_s_cprec_t_clover_linop_w.h: Fixed some oopsies 2007-03-16 14:25 bjoo * lib/actions/ferm/linop/: clover_term_base_w.h, clover_term_qdp_w.cc, clover_term_qdp_w.h: Added ApplySite() function 2007-03-16 14:23 bjoo * lib/actions/ferm/fermacts/eo3dprec_s_cprec_t_clover_fermact_w.cc, lib/actions/ferm/fermacts/eo3dprec_s_cprec_t_clover_fermact_w.h, lib/actions/ferm/fermacts/fermacts_aggregate_w.cc, lib/Makefile.am, mainprogs/tests/t_temp_prec.cc: Schur Preconditioned Clover Ferm Act 2007-03-16 14:22 bjoo * lib/actions/ferm/linop/: eo3dprec_s_cprec_t_clover_linop_w.cc, eo3dprec_s_cprec_t_clover_linop_w.h: Schur preconditioned clover lin op. Uses Inner CG as a quick hack. Fix this later if worth it. 2007-03-16 14:21 bjoo * tests/chroma/hadron/propagator/: eo3dprec_s_cprec_t_clover.ini.xml, eo3dprec_s_cprec_t_clover.metric.xml, eo3dprec_s_cprec_t_clover.out.xml: Test files for Schur preconditioned and Temp Preconditioned clover operator 2007-03-15 09:35 edwards * lib/update/molecdyn/monomial/force_calc.cc: Helper function for force calculations. 2007-03-15 00:48 edwards * lib/update/molecdyn/monomial/force_calc.h: Replaced simple norm2(F) with a forceCalc() call. Now write out more diagnostic forces. 2007-03-15 00:23 edwards * lib/update/molecdyn/monomial/force_calc.h: Helper function for calculating forces. 2007-03-14 23:50 edwards * README: Updated dependencies. 2007-03-14 14:21 bjoo * tests/chroma/hadron_s/spectrum_s/regres.pl: Renamed spectrum_s to inline spectrum_s 2007-03-14 12:01 bjoo * scripts/test_runners/load_leveller_queue.sh.in: Submit jobs to BGL load leveller queue 2007-03-08 16:02 bjoo * scripts/queue_chroma_regressions.pl: Typo 2007-03-08 15:59 bjoo * scripts/queue_chroma_regressions.pl: This can just queue jobs if a good queue script is given 2007-03-08 15:52 bjoo * scripts/check_regres_runner.pl: Check Regres Runner can now cope with .log files too 2007-03-08 09:18 bjoo * aclocal.m4, configure, configure.ac, lib/chroma_config_internal.h.in, lib/actions/ferm/linop/lwldslash_array_pab_w.cc, lib/actions/ferm/linop/lwldslash_w_pab.cc: Remade on qcdi01 with automake-1-9-2. Added --enable-bagel-wilson-dslash-sloppy option to allow experimantation without having to hack the code 2007-03-06 19:02 bjoo * aclocal.m4, chroma-config.in, configure, configure.ac, lib/Makefile.am, lib/chroma_config_internal.h.in, lib/actions/ferm/linop/lwldslash_w_sse.cc, lib/init/chroma_init.cc, mainprogs/main/Makefile.am, mainprogs/tests/Makefile.am, mainprogs/tests/t_lwldslash_array.cc, other_libs/intel_sse_wilson_dslash/aclocal.m4, other_libs/intel_sse_wilson_dslash/configure, other_libs/intel_sse_wilson_dslash/configure.ac, other_libs/intel_sse_wilson_dslash/examples/Makefile.am, other_libs/intel_sse_wilson_dslash/include/sse_config_internal.h.in, other_libs/intel_sse_wilson_dslash/lib/Makefile.am, other_libs/intel_sse_wilson_dslash/src/parscalar/32bit/dslash/sse_su3dslash_w.c: QMT Threads in 32 bit parscalar dslash 2007-03-05 16:10 tag chroma3-22-7 2007-03-05 16:10 bjoo * NEWS, aclocal.m4: ALl the rest 2007-03-05 16:10 bjoo * configure: Configure 2007-03-05 16:05 bjoo * configure.ac: Version bumped 2007-03-05 15:09 bjoo * lib/: singleton.h, actions/ferm/linop/lwldslash_array_pab_w.h, actions/ferm/linop/lwldslash_w_pab.cc: BGL fixes hopefully done 2007-03-05 15:02 bjoo * configure.ac, configure, aclocal.m4, lib/singleton.h, lib/actions/ferm/fermacts/eoprec_clover_extfield_fermact_w.cc, lib/actions/ferm/fermacts/eoprec_clover_fermact_w.cc, lib/actions/ferm/fermacts/eoprec_slic_fermact_w.cc, lib/actions/ferm/fermacts/unprec_clover_fermact_w.cc, lib/actions/ferm/fermacts/unprec_dwf_fermact_array_w.cc, lib/actions/ferm/linop/eoprec_clover_extfield_linop_w.cc, lib/actions/ferm/linop/eoprec_slic_linop_w.h, lib/actions/ferm/linop/lwldslash_array_pab_w.h, lib/actions/ferm/linop/lwldslash_w_pab.cc, tests/regres.pl: BGL fixes 2007-03-05 15:01 bjoo * other_libs/cg-dwf/: Makefile.am, aclocal.m4, configure: Made t_dwf_cg2 an extra program so it is not built by default hopefully 2007-03-05 14:50 bjoo * aclocal.m4: Makefile.ins 2007-03-05 14:49 bjoo * configure: Configure.ac 2007-03-05 14:36 bjoo * configure, configure.ac, lib/chroma_config_internal.h.in, lib/actions/ferm/invert/syssolver_linop_cg.h, lib/actions/ferm/invert/syssolver_linop_cg_array.h, lib/actions/ferm/invert/syssolver_linop_cg_timing.h, lib/actions/ferm/invert/syssolver_mdagm_cg.h, lib/actions/ferm/invert/syssolver_mdagm_cg_array.h, lib/actions/ferm/invert/syssolver_mdagm_cg_timing.h, lib/actions/ferm/qprop/dwf_qpropt_w.h, lib/actions/ferm/qprop/eoprec_dwf_qprop_array_cg_dwf_lowmem_w.h, lib/actions/ferm/qprop/eoprec_dwf_qprop_array_cg_dwf_w.h: Added fixes so that checks pass 2007-03-05 11:13 bjoo * configure, configure.ac, lib/Makefile.am, lib/chroma_config_internal.h.in, lib/actions/ferm/invert/syssolver_cg_params.cc, lib/actions/ferm/invert/syssolver_cg_params.h, lib/actions/ferm/invert/syssolver_cgdwf_params.cc, lib/actions/ferm/invert/syssolver_cgdwf_params.h, lib/actions/ferm/qprop/dwf_qpropt_w.h, lib/actions/ferm/qprop/eoprec_dwf_qprop_array_cg_dwf_lowmem_w.h: Allows switching CG-DWF USage styles alpha verision- untested 2007-03-05 11:08 bjoo * lib/actions/ferm/qprop/eoprec_dwf_qprop_array_cg_dwf_w.h: Replaced the origina version 2007-03-02 15:59 bjoo * lib/actions/ferm/invert/: syssolver_cgdwf_params.cc, syssolver_cgdwf_params.h: Oopsie 2007-03-02 15:58 bjoo * aclocal.m4, configure, lib/Makefile.am, lib/actions/ferm/qprop/eoprec_dwf_qprop_array_cg_dwf_w.h: Reworked the CG-DWF solver so that only one solver is in scope at any one time. This should cut down on memory costs. Also just for this - CGDWF - solver, I added separate residua for the single and double precision solve 2007-03-02 13:25 bjoo * lib/actions/ferm/linop/lwldslash_w_pab.h: Ok this is now supposedly fixed 2007-03-02 12:17 bjoo * scripts/test_runners/cobalt_runner.sh.in: Now uses SWOA 2007-03-01 15:13 dgr * PBS/spectrum/bin/: parse_diquark.pl, parse_group.pl: parse_group pulls out the needed Dirac indices in a given qqq parse_diquark attempts to identify common diquarks in a qqq 2007-03-01 11:02 bjoo * configure.ac: Modified configure.ac 2007-03-01 11:00 bjoo * scripts/test_runners/cobalt_runner.sh.in: Added a cobalt testcase runner for MIT BG/L 2007-03-01 09:53 bjoo * lib/actions/ferm/linop/lwldslash_w_pab.h: Activated CHROMA_WFM_NO_END. It allowed the BGL Clover Test to succeed 2007-02-28 16:32 bjoo * lib/actions/ferm/linop/: lwldslash_array_pab_w.cc, lwldslash_w_pab.cc, lwldslash_w_pab.h: Tried to clean up the refcounting in this.... AGAIN 2007-02-27 22:28 edwards * lib/meas/hadron/barcomp_diquark_w.cc: Bug fix. Needed to reverse ordering of spin indices on qc_3. 2007-02-27 22:28 edwards * lib/meas/hadron/diquark_w.cc: Small changes. Try to avoid some copy constructor calls. 2007-02-27 16:39 tag chroma3-22-6 2007-02-27 16:39 bjoo * aclocal.m4, configure: Remade autofiles for release. Now needs qdp v1.22.0 to function. QCDOC Branch potentially unstable (in BAGEL Dslash wrapper) 2007-02-27 15:28 bjoo * NEWS, configure, configure.ac, lib/Makefile.am, lib/central_tprec_linop.h, lib/eo3dprec_s_cprec_t_wilstype_fermact_w.h, lib/actions/ferm/fermacts/eo3dprec_s_cprec_t_wilson_fermact_w.cc, lib/actions/ferm/fermacts/eo3dprec_s_cprec_t_wilson_fermact_w.h, lib/actions/ferm/fermacts/fermacts_aggregate_w.cc, lib/actions/ferm/linop/eo3dprec_s_cprec_t_wilson_linop_w.cc, lib/actions/ferm/linop/eo3dprec_s_cprec_t_wilson_linop_w.h, lib/actions/ferm/qprop/central_tprec_fermact_qprop_w.cc, mainprogs/tests/t_temp_prec.cc, tests/regres.pl, tests/chroma/hadron/propagator/eo3dprec_s_cprec_t_wilson.ini.xml, tests/chroma/hadron/propagator/eo3dprec_s_cprec_t_wilson.metric.xml, tests/chroma/hadron/propagator/eo3dprec_s_cprec_t_wilson.out.xml: Pre versioning commit 2007-02-25 21:12 edwards * lib/io/: qprop_io.cc, qprop_io.h: Added QQDiquark_t. 2007-02-25 21:12 edwards * tests/chroma/hadron/qqq/qqdiquark.metric.xml: Fixed test. 2007-02-25 21:11 edwards * scripts/run_chroma_xmldiff.pl: Added printing of times. 2007-02-25 17:49 edwards * tests/chroma/hadron/qqq/: qqdiquark.metric.xml, regres.pl: New regression tests. 2007-02-25 17:42 edwards * tests/chroma/hadron/qqq/: qqdiquark.ini.xml, qqdiquark.metric.xml, qqdiquark.out.xml: First versions. 2007-02-25 17:42 edwards * tests/chroma/hadron/qqq/: qqq.ini.xml, qqq.out.xml: New input and output formats. 2007-02-25 17:39 edwards * lib/meas/: hadron/diquark_w.cc, hadron/diquark_w.h, inline/eig/inline_ritz_H_w.cc, inline/hadron/inline_diquark_w.cc, inline/hadron/inline_hadron_aggregate.cc, inline/hadron/inline_make_source_ferm_w.cc, inline/hadron/inline_make_source_w.cc, inline/hadron/inline_multi_propagator_w.cc, inline/hadron/inline_polar_source_w.cc, inline/hadron/inline_propagator_ferm_w.cc, inline/hadron/inline_propagator_w.cc, inline/hadron/inline_qqbar_w.cc, inline/hadron/inline_qqq_w.cc, inline/hadron/inline_seqsource_w.cc, inline/hadron/inline_sink_smear_w.cc, inline/hadron/inline_stag_to_wils.cc, inline/hadron_s/inline_make_source_s.cc, inline/hadron_s/inline_propagator_s.cc, inline/hadron_s/inline_sink_smear_s.cc: Replaced id in header with a proper unique id. 2007-02-25 17:39 edwards * lib/meas/: hadron/barcomp_diquark_w.cc, hadron/barcomp_diquark_w.h, inline/hadron/inline_qqq_diquark_w.cc, inline/hadron/inline_qqq_diquark_w.h: Construct a QQQ object from a diquark and a prop. 2007-02-25 17:37 edwards * lib/util/info/unique_id.cc: Fixed doxygen comment. 2007-02-25 17:37 edwards * lib/util/info/proginfo.cc: Indented some. 2007-02-25 17:36 edwards * lib/util/info/: unique_id.cc, unique_id.h: Generates a unique id. 2007-02-25 17:35 edwards * lib/Makefile.am: Added diquark routines and a new unique_id. 2007-02-23 16:38 bjoo * aclocal.m4, configure, lib/actions/ferm/linop/lwldslash_array_pab_w.cc, lib/actions/ferm/linop/lwldslash_array_qdpopt_w.cc, lib/actions/ferm/linop/lwldslash_array_w.cc, lib/actions/ferm/linop/lwldslash_qdpopt_w.cc, lib/actions/ferm/linop/lwldslash_w.cc, tests/regres.pl: Fixes exposed by not using level 3 dslash 2007-02-22 16:11 bjoo * lib/central_tprec_linop.h, lib/eo_linop.h, lib/eoprec_constdet_linop.h, lib/eoprec_linop.h, lib/eoprec_logdet_linop.h, lib/fermbc.h, lib/gaugeact.h, lib/linearop.h, lib/lmdagm.h, lib/syssolver.h, lib/teoprec_linop.h, lib/teoprec_logdet_linop.h, lib/tprec_linop.h, lib/tprec_logdet_linop.h, lib/actions/ferm/fermacts/eoprec_ht_contfrac5d_fermact_array_w.cc, lib/actions/ferm/fermacts/eoprec_ovext_fermact_array_w.cc, lib/actions/ferm/fermacts/eoprec_ovlap_contfrac5d_fermact_array_w.cc, lib/actions/ferm/fermacts/overlap_fermact_base_w.cc, lib/actions/ferm/fermacts/unprec_ht_contfrac5d_fermact_array_w.cc, lib/actions/ferm/fermacts/unprec_ovext_fermact_array_w.cc, lib/actions/ferm/fermacts/unprec_ovlap_contfrac5d_fermact_array_w.cc, lib/actions/ferm/fermbcs/periodic_fermbc.h, lib/actions/ferm/fermbcs/schroedinger_fermbc_w.h, lib/actions/ferm/fermbcs/simple_fermbc.h, lib/actions/ferm/fermbcs/twisted_fermbc_w.h, lib/actions/ferm/invert/inv_gmresr_cg_array.cc, lib/actions/ferm/invert/inv_minres_array.cc, lib/actions/ferm/invert/inv_rel_cg1.cc, lib/actions/ferm/invert/inv_rel_cg2.cc, lib/actions/ferm/invert/inv_rel_gmresr_cg.cc, lib/actions/ferm/invert/inv_rel_gmresr_sumr.cc, lib/actions/ferm/invert/invbicgstab.cc, lib/actions/ferm/invert/invbicgstab_array.cc, lib/actions/ferm/invert/invcg1.cc, lib/actions/ferm/invert/invcg1_array.cc, lib/actions/ferm/invert/invcg2.cc, lib/actions/ferm/invert/invcg2_array.cc, lib/actions/ferm/invert/invcg2_timing_hacks.cc, lib/actions/ferm/invert/invmr.cc, lib/actions/ferm/invert/minv_rel_cg.cc, lib/actions/ferm/invert/minvcg.cc, lib/actions/ferm/invert/minvcg_array.cc, lib/actions/ferm/invert/multi_syssolver_mdagm_cg.h, lib/actions/ferm/invert/multi_syssolver_mdagm_cg_array.h, lib/actions/ferm/invert/syssolver_linop_cg.h, lib/actions/ferm/invert/syssolver_linop_cg_array.h, lib/actions/ferm/invert/syssolver_linop_cg_timing.h, lib/actions/ferm/invert/syssolver_mdagm_cg.h, lib/actions/ferm/invert/syssolver_mdagm_cg_array.h, lib/actions/ferm/invert/syssolver_mdagm_cg_timing.h, lib/actions/ferm/invert/syssolver_polyprec_cg.h, lib/actions/ferm/linop/asq_dsl_s.h, lib/actions/ferm/linop/asqtad_mdagm_s.h, lib/actions/ferm/linop/clover_term_base_w.h, lib/actions/ferm/linop/eoprec_ht_contfrac5d_linop_array_w.h, lib/actions/ferm/linop/eoprec_ovlap_contfrac5d_linop_base_array_w.h, lib/actions/ferm/linop/lDeltaLs_w.h, lib/actions/ferm/linop/lg5Rherm_w.h, lib/actions/ferm/linop/lg5eps_double_pass_w.h, lib/actions/ferm/linop/lg5eps_w.h, lib/actions/ferm/linop/lgherm_w.h, lib/actions/ferm/linop/llincomb.h, lib/actions/ferm/linop/lopscl.h, lib/actions/ferm/linop/lovddag_double_pass_w.h, lib/actions/ferm/linop/lovddag_w.h, lib/actions/ferm/linop/lovlap_double_pass_w.h, lib/actions/ferm/linop/lovlapms_w.h, lib/actions/ferm/linop/lwldslash_base_array_w.h, lib/actions/ferm/linop/lwldslash_base_w.h, lib/actions/ferm/linop/overlapbu_linop_w.h, lib/actions/ferm/linop/polprec_op.h, lib/actions/ferm/linop/polynomial_op.h, lib/actions/ferm/linop/unprec_dwf4d_linop_w.h, lib/actions/ferm/linop/unprec_dwf_linop_array_w.h, lib/actions/ferm/linop/unprec_dwftransf_linop_w.h, lib/actions/ferm/linop/unprec_ht_contfrac5d_linop_array_w.h, lib/actions/ferm/linop/unprec_nef_linop_array_w.h, lib/actions/ferm/linop/unprec_ovdwf_linop_array_w.h, lib/actions/ferm/linop/unprec_ovext_linop_array_w.h, lib/actions/ferm/linop/unprec_ovlap_contfrac5d_linop_array_w.h, lib/actions/ferm/linop/unprec_ovlap_contfrac5d_nonhermop_array_w.h, lib/actions/ferm/linop/unprec_ovlap_contfrac5d_pv_linop_array_w.h, lib/actions/ferm/linop/unprec_parwilson_linop_w.h, lib/actions/ferm/linop/unprec_pdwf4d_linop_w.h, lib/actions/ferm/linop/unprec_ppdwf4d_linop_w.h, lib/actions/ferm/qprop/asqtad_cps_wrapper_qprop.h, lib/actions/ferm/qprop/central_tprec_fermact_qprop_w.cc, lib/actions/ferm/qprop/dwf_fermact_qprop_array_w.cc, lib/actions/ferm/qprop/eoprec_dwf_qprop_array_cg_dwf_w.h, lib/actions/ferm/qprop/eoprec_fermact_qprop.cc, lib/actions/ferm/qprop/eoprec_fermact_qprop_array.h, lib/actions/ferm/qprop/eoprec_staggered_qprop.h, lib/actions/ferm/qprop/fermact_qprop.cc, lib/actions/ferm/qprop/fermact_qprop_array.cc, lib/actions/gauge/gaugeacts/aniso_spectrum_gaugeact.h, lib/actions/gauge/gaugeacts/lw_1loop_gaugeact.h, lib/actions/gauge/gaugeacts/lw_tree_gaugeact.h, lib/actions/gauge/gaugeacts/pg_gaugeact.h, lib/actions/gauge/gaugeacts/plaq_gaugeact.h, lib/actions/gauge/gaugeacts/plaq_plus_spatial_two_plaq_gaugeact.h, lib/actions/gauge/gaugeacts/rbc_gaugeact.h, lib/actions/gauge/gaugeacts/rect_gaugeact.h, lib/actions/gauge/gaugeacts/rg_gaugeact.h, lib/actions/gauge/gaugeacts/spatial_two_plaq_gaugeact.h, lib/actions/gauge/gaugeacts/wilson_gaugeact.h, lib/meas/eig/eig_spec.cc, lib/meas/eig/eig_spec_array.cc, lib/meas/eig/gramschm.cc, lib/meas/eig/gramschm.h, lib/meas/eig/gramschm_array.cc, lib/meas/eig/gramschm_array.h, lib/meas/eig/ritz.cc, lib/meas/eig/ritz_array.cc, lib/meas/eig/sn_jacob.cc, lib/meas/eig/sn_jacob.h, lib/meas/eig/sn_jacob_array.cc, lib/meas/eig/sn_jacob_array.h, lib/meas/hadron/barQll_w.cc, lib/meas/hadron/baryon_s.cc, lib/meas/hadron/loops_w.cc, lib/meas/hadron/pion_local_s.cc, lib/meas/hadron/pion_sing_s.cc, lib/meas/hadron/pions_s.cc, lib/meas/hadron/pseudoscalar_loops_s.cc, lib/meas/hadron/pseudoscalar_stoch_conn_s.cc, lib/meas/hadron/qqbar_w.cc, lib/meas/hadron/scalar_loops_s.cc, lib/meas/hadron/stag_scalars_s.cc, lib/meas/hadron/vector_meson_s.cc, lib/meas/inline/eig/inline_ritz_H_w.cc, lib/update/heatbath/mciter32.cc, lib/update/heatbath/mciter32.h, lib/update/heatbath/su2_hb_update.cc, lib/update/heatbath/su2_hb_update.h, lib/update/heatbath/su3hb.cc, lib/update/heatbath/su3hb.h, lib/update/heatbath/su3over.cc, lib/update/heatbath/su3over.h, lib/update/molecdyn/old/wils_hamsys_w.h, lib/update/molecdyn/old/mese/clmesferm_w.cc, lib/update/molecdyn/old/mese/mesferm_w.cc, lib/update/molecdyn/old/mese/wlmesferm_w.cc, lib/update/molecdyn/predictor/mre_extrap_predictor.cc, lib/util/ft/sftmom.h, lib/util/gauge/reunit.cc, lib/util/gauge/reunit.h, lib/util/gauge/su2extract.cc, lib/util/gauge/su2extract.h, lib/util/gauge/su3proj.cc, lib/util/gauge/su3proj.h, lib/util/gauge/sun_proj.cc, lib/util/gauge/sun_proj.h, lib/util/gauge/sunfill.cc, lib/util/gauge/sunfill.h, mainprogs/tests/invcg2_prec_wilson.cc, mainprogs/tests/invcg2_timing_hacks_2.cc, mainprogs/tests/invcg2_timing_hacks_3.cc, mainprogs/tests/t_bicgstab.cc, mainprogs/tests/t_follana_io_s.cc, mainprogs/tests/t_propagator_nrqcd.cc, mainprogs/tests/t_ritz_KS.cc, mainprogs/tests/t_wlinvcg.cc: Removed Ordered and Unordered Subsets and Sets. Now just have Subsets and Sets -not Unordered or Ordered - passes regressions with suitable QDP where QDP has SSE disabled 2007-02-22 15:52 tag chroma3-22-5 2007-02-22 15:52 bjoo * NEWS, aclocal.m4, configure, configure.ac: Version Stamp before subset changes 2007-02-22 10:51 edwards * lib/meas/inline/hadron/inline_diquark_w.cc: Fixed typos. 2007-02-22 01:58 edwards * lib/meas/: hadron/diquark_w.cc, hadron/diquark_w.h, inline/hadron/inline_diquark_w.cc, inline/hadron/inline_diquark_w.h: First version of diquark routines. 2007-02-21 23:52 edwards * lib/meas/inline/hadron/inline_qqq_w.h: Changed doxygen comment. 2007-02-21 23:51 edwards * lib/meas/inline/hadron/: inline_qqq_w.cc, inline_qqq_w.h: Changed to using structs within the InlineQQQEnv namespace. 2007-02-18 13:50 bjoo * NEWS, lib/Makefile.am, lib/actions/ferm/fermacts/fermacts_aggregate_w.cc, lib/actions/ferm/fermacts/fermacts_w.h, lib/actions/ferm/fermacts/iluprec_s_cprec_t_clover_fermact_w.cc, lib/actions/ferm/fermacts/iluprec_s_cprec_t_clover_fermact_w.h, lib/actions/ferm/linop/iluprec_s_cprec_t_clover_linop_w.cc, lib/actions/ferm/linop/iluprec_s_cprec_t_clover_linop_w.h, lib/actions/ferm/linop/linop_w.h, mainprogs/tests/t_temp_prec.cc, tests/chroma/hadron/propagator/iluprec_s_cprec_t_clover.ini.xml, tests/chroma/hadron/propagator/iluprec_s_cprec_t_clover.metric.xml, tests/chroma/hadron/propagator/iluprec_s_cprec_t_clover.out.xml: Added ILU Preconditioned Space Central Temp Preconditioned Clover 2007-02-16 22:51 bjoo * lib/central_tprec_linop.h, lib/actions/ferm/linop/iluprec_s_cprec_t_wilson_linop_w.h, mainprogs/tests/t_temp_prec.cc: Added genral matrix A-1 to ILUPrec linop. For wilson A=0 and A-1 = -1. For clover A is the clover term with a suitable mass term. Coming soon 2007-02-16 17:52 bjoo * lib/Makefile.am, lib/central_tprec_linop.h, lib/iluprec_s_cprec_t_wilstype_fermact_w.h, lib/actions/ferm/fermacts/fermacts_aggregate_w.cc, lib/actions/ferm/fermacts/iluprec_s_cprec_t_wilson_fermact_w.cc, lib/actions/ferm/fermacts/iluprec_s_cprec_t_wilson_fermact_w.h, lib/actions/ferm/linop/iluprec_s_cprec_t_wilson_linop_w.cc, lib/actions/ferm/linop/iluprec_s_cprec_t_wilson_linop_w.h, lib/actions/ferm/qprop/central_tprec_fermact_qprop_w.cc, lib/actions/ferm/qprop/unprec_s_cprec_t_fermact_qprop_w.cc, mainprogs/tests/t_temp_prec.cc, tests/chroma/hadron/propagator/iluprec_s_cprec_t_wilson.ini.xml, tests/chroma/hadron/propagator/iluprec_s_cprec_t_wilson.metric.xml, tests/chroma/hadron/propagator/iluprec_s_cprec_t_wilson.out.xml, tests/chroma/hadron/propagator/regres.pl: Added ILU (RED BLACK) Preconditioned Wilson TPrec LinOp 2007-02-15 17:40 bjoo * aclocal.m4, configure, lib/Makefile.am, lib/actions/ferm/linop/central_tprec_nospin_utils.h, lib/actions/ferm/linop/unprec_s_cprec_t_wilson_linop_w.cc, lib/actions/ferm/linop/unprec_s_cprec_t_wilson_linop_w.h: Refactored central tprec linop. Moved generic bits into central_tprec_nospin_utils.h. Changed site loops, to be able to cope with other subsets than all. - Do I really need to figure out how to do 3d even-odd subsets in QDP 2007-02-15 15:56 tag chroma3-22-4 2007-02-15 15:56 bjoo * aclocal.m4, configure, configure.ac, tests/regres.pl: Remade autofiles. Unprec Space Temp Precond Time now works 2007-02-15 14:59 bjoo * NEWS, lib/Makefile.am, lib/unprec_s_cprec_t_wilstype_fermact_w.h, lib/actions/ferm/fermacts/fermacts_aggregate_w.cc, lib/actions/ferm/fermacts/unprec_s_cprec_t_wilson_fermact_w.cc, lib/actions/ferm/fermacts/unprec_s_cprec_t_wilson_fermact_w.h, lib/actions/ferm/linop/unprec_s_cprec_t_wilson_linop_w.h, lib/actions/ferm/qprop/unprec_s_cprec_t_fermact_qprop_w.cc, mainprogs/tests/t_temp_prec.cc, tests/regres.pl, tests/chroma/hadron/propagator/regres.pl, tests/chroma/hadron/propagator/unprec_s_cprec_t_wilson.ini.xml, tests/chroma/hadron/propagator/unprec_s_cprec_t_wilson.metric.xml, tests/chroma/hadron/propagator/unprec_s_cprec_t_wilson.out.xml, tests/chroma/hadron/propagator/unprec_wilson.ini.xml, tests/chroma/hadron/propagator/unprec_wilson.metric.xml, tests/chroma/hadron/propagator/unprec_wilson.out.xml: Wrapped FermAct round Central TPrec LinOp and wrote qprop 2007-02-13 17:25 bjoo * aclocal.m4, configure, lib/Makefile.am, lib/central_tprec_linop.h, lib/actions/ferm/linop/unprec_s_cprec_t_wilson_linop_w.cc, lib/actions/ferm/linop/unprec_s_cprec_t_wilson_linop_w.h, mainprogs/tests/Makefile.am, mainprogs/tests/t_temp_prec.cc: Added Space Unpreconditioned Time Preconditioned Wilson Op 2007-02-11 17:57 edwards * lib/util/gauge/gauge_init_aggregate.cc: Ooops, forgot to add "SZIN". Now done. 2007-02-08 10:49 tag chroma3-22-3 2007-02-08 10:49 bjoo * configure, configure.ac: Remade autofiles 2007-02-08 10:48 bjoo * NEWS, aclocal.m4, configure, lib/actions/ferm/linop/lwldslash_array_qdpopt_w.cc, lib/actions/ferm/linop/lwldslash_array_w.cc, lib/io/enum_io/enum_io.h, lib/io/enum_io/enum_wvfkind_io.cc, lib/io/enum_io/enum_wvfkind_io.h: Fixed Wfkind thing 2007-02-06 10:27 bjoo * aclocal.m4, configure, lib/Makefile.am, lib/chroma_config_internal.h.in, mainprogs/tests/Makefile.am, mainprogs/tests/t_lwldslash_array.cc, mainprogs/tests/t_lwldslash_new.cc, other_libs/cg-dwf/aclocal.m4, other_libs/cg-dwf/configure: Added faster dslashes in QDP 2007-02-06 10:20 bjoo * lib/actions/ferm/linop/: dslash_array_w.h, dslash_w.h, lwldslash_array_qdpopt_w.cc, lwldslash_array_qdpopt_w.h, lwldslash_qdpopt_w.cc, lwldslash_qdpopt_w.h: Added faster QDP Dslashen 2007-02-04 17:57 edwards * lib/meas/smear/link_smearing_aggregate.cc: Changed str() to printCurrentContext() 2007-02-04 17:54 edwards * tests/: hmc/hmc.prec_wilson.out.xml, chroma/schrfun/schrfun.ini.xml, chroma/schrfun/schrfun.out.xml: New regression output. 2007-02-04 17:52 edwards * lib/util/gauge/szinqio_gauge_init.cc: Changed print str() to printCurrentContext() 2007-02-04 17:49 edwards * mainprogs/main/hmc.cc: Added gauge init to linkage. 2007-02-04 17:44 edwards * mainprogs/main/hmc.cc: Moved around try/catch. 2007-02-04 17:41 edwards * mainprogs/main/hmc.cc: Fixed a small typo. 2007-02-04 17:40 edwards * mainprogs/main/: chroma.cc, hmc.cc: Added try/catch around gauge init. 2007-02-04 17:09 edwards * lib/meas/: smear/link_smearing_aggregate.cc, sources/pt_source_const.cc, sources/sh_source_const.cc: Switched to using link_smearing.path 2007-02-04 17:08 edwards * lib/io/io.h: Added xml_group_reader.h 2007-02-04 17:07 edwards * lib/Makefile.am: Added new gauge initializers. 2007-02-04 17:07 edwards * mainprogs/main/: chroma.cc, hmc.cc: Switched to using new gauge initializer object. 2007-02-04 17:06 edwards * lib/util/gauge/: cppacs_gauge_init.cc, cppacs_gauge_init.h, disordered_gauge_init.cc, disordered_gauge_init.h, gauge.h, gauge_init.h, gauge_init_aggregate.cc, gauge_init_aggregate.h, gauge_init_factory.h, kyu_gauge_init.cc, kyu_gauge_init.h, milc_gauge_init.cc, milc_gauge_init.h, nersc_gauge_init.cc, nersc_gauge_init.h, sf_gauge_init.cc, sf_gauge_init.h, szin_gauge_init.cc, szin_gauge_init.h, szinqio_gauge_init.cc, szinqio_gauge_init.h, unit_gauge_init.cc, unit_gauge_init.h, weak_gauge_init.cc, weak_gauge_init.h: New gauge initializers. 2007-02-02 10:30 edwards * lib/meas/inline/hadron/inline_qqq_w.cc: Changed barprop_1d to have type ComplexF. 2007-02-02 00:22 edwards * lib/: io/qprop_io.cc, io/qprop_io.h, meas/hadron/barcomp_w.cc, meas/hadron/barcomp_w.h, meas/inline/hadron/inline_qqq_w.cc, meas/inline/hadron/inline_qqq_w.h: Moved QQQSpinIndices and the reader/writer to qprop_io. Now QQQBarcomp_t knows about spin indices. 2007-02-02 00:21 edwards * tests/chroma/hadron/qqq/qqq.out.xml: Updated output format. 2007-02-01 22:49 edwards * lib/meas/: hadron/barcomp_w.cc, hadron/barcomp_w.h, inline/hadron/inline_qqq_w.cc, inline/hadron/inline_qqq_w.h: Added sparse QQQ output format. 2007-02-01 22:49 edwards * tests/chroma/hadron/qqq/: qqq.ini.xml, qqq.out.xml: New sparse output format. 2007-01-20 16:57 edwards * lib/actions/ferm/invert/minvcg.cc: Added missing "stop" of swatch. 2007-01-16 21:54 edwards * configure: Induced changes. 2007-01-16 21:53 edwards * lib/Makefile.am, mainprogs/main/Makefile.am, mainprogs/tests/Makefile.am: Removed old altivec and sse cg structure. 2007-01-16 21:50 edwards * configure.ac: Removed old altivec and sse cg codes. 2007-01-16 21:50 edwards * lib/: Makefile.am, actions/ferm/qprop/eoprec_dwf_qprop_array_altivec_w.cc, actions/ferm/qprop/eoprec_dwf_qprop_array_altivec_w.h, actions/ferm/qprop/eoprec_dwf_qprop_array_cg_dwf_w.cc, actions/ferm/qprop/eoprec_dwf_qprop_array_sse_w.cc, actions/ferm/qprop/eoprec_dwf_qprop_array_sse_w.h: Removed old usage of altivec and sse dwf cg codes. Do not need eoprec_cg_dwf wrapper. 2007-01-16 21:39 edwards * lib/actions/ferm/qprop/: avp_altivecf_solver.cc, avp_altivecf_solver.h, avp_bgld_solver.cc, avp_bgld_solver.h, avp_bglf_solver.cc, avp_bglf_solver.h, avp_inverter_interface.h, avp_ssed_solver.cc, avp_ssed_solver.h, avp_ssef_solver.cc, avp_ssef_solver.h: Added doxygen comments. Also put in appropriate printing of name of inverter being called. 2007-01-11 01:16 juge * lib/meas/hadron/group_baryon_operator_w.h: Removed extra cfg variable from QQQ routines. 2007-01-11 01:01 juge * lib/meas/hadron/group_baryon_operator_w.cc: Removed extra cfg variable from QQQs. 2007-01-08 09:07 bjoo * other_libs/cg-dwf/: aclocal.m4, configure: Re-autoified with v 1.9.2 tools 2007-01-08 09:04 bjoo * other_libs/cg-dwf/: Makefile.am, aclocal.m4, configure: Hopefully fixed the automake file 2007-01-05 14:10 bjoo * other_libs/cg-dwf/: aclocal.m4, configure: Remade autofiles 2007-01-05 14:06 bjoo * other_libs/cg-dwf/: Makefile.am, aclocal.m4, configure, configure.ac, dwf-ssed.h, dwf-ssef.h, dwf.c, t_dwf_cg2.c: Added in timings stuff 2007-01-04 21:53 edwards * lib/actions/ferm/linop/clover_term_qdp_w.cc: Changed "QDPIO::cerr" to "cerr" so any node can print the error output of a det() < 0. 2007-01-03 12:53 tag chroma3-22-2 2007-01-03 12:53 bjoo * configure, configure.ac, lib/actions/ferm/linop/clover_term_qdp_w.cc: Added check for logs of negative numbers - added new revision number to configure.ac 2006-12-29 00:04 edwards * NEWS: Infon on 3.22.1 and 3.22.0. 2006-12-28 12:34 tag chroma3-22-1 2006-12-28 12:34 bjoo * lib/update/molecdyn/: integrator/abs_integrator.h, integrator/lcm_4mn4fp_recursive.h, integrator/lcm_4mn5fp_recursive.h, integrator/lcm_4mn5fv_recursive.h, integrator/lcm_creutz_gocksch_4_recursive.h, integrator/lcm_exp_sdt.h, integrator/lcm_exp_tdt.h, integrator/lcm_sts_leapfrog_recursive.h, integrator/lcm_sts_min_norm2_recursive.h, integrator/lcm_tst_leapfrog_recursive.h, integrator/lcm_tst_min_norm2_recursive.h, monomial/abs_monomial.h, monomial/two_flavor_hasenbusch_monomial5d_w.h, monomial/two_flavor_hasenbusch_monomial_w.h, monomial/two_flavor_monomial5d_w.h, monomial/two_flavor_monomial_w.h, monomial/two_flavor_polyprec_monomial_w.h, predictor/last_solution_predictor.h, predictor/linear_extrap_predictor.h, predictor/mre_extrap_predictor.h, predictor/zero_guess_predictor.h: Dealt with Chrono resetting. Added resetPredictors into monomial base class and into component integrators. Toplevel integrator can explicitly reset chron predictors at start of traj now. Previously this was implicitly done in the field copying routine setInternalFields. Since now most of the time we dont copy I had to explicitly call the predictor reset at the start of the traj. Predictors are also implicitly called after field refreshments and before solves in action calculations 2006-12-28 10:41 bjoo * tests/t_leapfrog/: regres.pl, t_leapfrog.prec_hasenbusch5d_dwf.ini.xml, t_leapfrog.prec_hasenbusch5d_dwf.log.xml, t_leapfrog.prec_hasenbusch5d_dwf.metric.xml, t_leapfrog.unprec_hasenbusch5d_dwf.ini.xml, t_leapfrog.unprec_hasenbusch5d_dwf.log.xml, t_leapfrog.unprec_hasenbusch5d_dwf.metric.xml: Added Unprec and Prec Hasenbusch 5D Monomial tests for DWF 2006-12-28 10:40 bjoo * lib/update/molecdyn/monomial/two_flavor_hasenbusch_monomial5d_w.h: Removed some diagnostic couts 2006-12-28 10:39 bjoo * mainprogs/tests/t_leapfrog.cc: Added a few comments here and there 2006-12-28 10:39 bjoo * lib/update/molecdyn/monomial/: eoprec_constdet_two_flavor_hasenbusch_monomial5d_w.cc, two_flavor_hasenbusch_monomial5d_w.h, unprec_two_flavor_hasenbusch_monomial5d_w.cc, unprec_two_flavor_hasenbusch_monomial5d_w.h: Made the 5D Hasenbusch monomials work finally 2006-12-27 20:39 tag chroma3-22-0 2006-12-27 20:39 bjoo * aclocal.m4, configure: Remade autotools1.9.2 files 2006-12-27 20:20 bjoo * tests/t_leapfrog/: t_leapfrog.prec_hasenbusch_wilson.ini.xml, t_leapfrog.prec_hasenbusch_wilson.log.xml, t_leapfrog.prec_parwilson.ini.xml, t_leapfrog.prec_parwilson.log.xml, t_leapfrog.prec_polynomial_wilson.ini.xml, t_leapfrog.prec_wilson.ini.xml, t_leapfrog.prec_wilson.log.xml, t_leapfrog.rect_gaugeact.ini.xml, t_leapfrog.rect_gaugeact.log.xml, t_leapfrog.rect_gaugeact_1.ini.xml, t_leapfrog.rect_gaugeact_1.log.xml, t_leapfrog.rect_gaugeact_aniso.ini.xml, t_leapfrog.rect_gaugeact_aniso.log.xml, t_leapfrog.rect_gaugeact_c1t0.ini.xml, t_leapfrog.rect_gaugeact_c1t0.log.xml, t_leapfrog.rect_gaugeact_omit2linkT.ini.xml, t_leapfrog.rect_gaugeact_omit2linkT.log.xml, t_leapfrog.two_plaq_spatial_gaugeact.ini.xml, t_leapfrog.two_plaq_spatial_gaugeact.log.xml, t_leapfrog.unprec_clover.ini.xml, t_leapfrog.unprec_clover.log.xml, t_leapfrog.unprec_dwf.ini.xml, t_leapfrog.unprec_dwf.log.xml, t_leapfrog.unprec_hasenbusch_wilson.ini.xml, t_leapfrog.unprec_hasenbusch_wilson.log.xml, t_leapfrog.unprec_wilson.ini.xml, t_leapfrog.unprec_wilson.log.xml: Converted all to new MD Scheme 2006-12-27 13:33 kostas * lib/meas/inline/hadron/inline_stag_to_wils.cc: .... 2006-12-25 23:36 kostas * lib/meas/inline/hadron/inline_stag_to_wils.cc: .. 2006-12-25 22:55 bjoo * tests/t_leapfrog/: t_leapfrog.parwilson_minimal_norm_2nd_order_integrator_mts.ini.xml, t_leapfrog.parwilson_minimal_norm_2nd_order_integrator_mts.log.xml, t_leapfrog.parwilson_minimal_norm_2nd_order_qpq_integrator_mts.ini.xml, t_leapfrog.parwilson_minimal_norm_2nd_order_qpq_integrator_mts.log.xml, t_leapfrog.parwilson_pqp_integrator_mts.ini.xml, t_leapfrog.parwilson_pqp_integrator_mts.log.xml, t_leapfrog.prec_1flav_dwf.ini.xml, t_leapfrog.prec_1flav_dwf.log.xml, t_leapfrog.prec_1flav_wilson.ini.xml, t_leapfrog.prec_1flav_wilson.log.xml, t_leapfrog.prec_2flav_clover.ini.xml, t_leapfrog.prec_2flav_clover.log.xml, t_leapfrog.prec_2flav_clover.sfnonpt.ini.xml, t_leapfrog.prec_2flav_clover.sfnonpt.log.xml, t_leapfrog.prec_2flav_clover_ee_oo.ini.xml, t_leapfrog.prec_2flav_clover_ee_oo.log.xml, t_leapfrog.prec_clover_stout.ini.xml, t_leapfrog.prec_clover_stout.log.xml, t_leapfrog.prec_contfrac.ini.xml, t_leapfrog.prec_contfrac.log.xml, t_leapfrog.prec_dwf.ini.xml, t_leapfrog.prec_dwf.log.xml: Fixed about half of the regressions 2006-12-25 17:54 bjoo * lib/Makefile.am, lib/update/molecdyn/integrator/integrator.h, lib/update/molecdyn/integrator/integrator_aggregate.cc, lib/update/molecdyn/integrator/lcm_min_norm2_recursive.cc, lib/update/molecdyn/integrator/lcm_min_norm2_recursive.h, lib/update/molecdyn/integrator/lcm_sts_min_norm2_recursive.cc, lib/update/molecdyn/integrator/lcm_sts_min_norm2_recursive.h, lib/update/molecdyn/integrator/lcm_tst_leapfrog_recursive.cc, lib/update/molecdyn/integrator/lcm_tst_leapfrog_recursive.h, lib/update/molecdyn/integrator/lcm_tst_min_norm2_recursive.cc, lib/update/molecdyn/integrator/lcm_tst_min_norm2_recursive.h, tests/t_leapfrog/t_leapfrog.parwilson_minimal_norm_2nd_qpq_integrator_mts.ini.xml: Added TST versions of leapfrog and min norm 2 2006-12-25 17:33 bjoo * tests/t_leapfrog/: t_leapfrog.aniso_spectrum.ini.xml, t_leapfrog.aniso_spectrum.log.xml, t_leapfrog.fixed_X_action_stout.ini.xml, t_leapfrog.fixed_X_action_stout.log.xml, t_leapfrog.lw.sfnonpt.ini.xml, t_leapfrog.lw.sfnonpt.log.xml: Converted 2006-12-25 16:56 bjoo * lib/Makefile.am: Code now builds. Regressions dont yet work. 1.6.2 build files 2006-12-25 16:50 bjoo * tests/hmc/: hmc.prec_wilson.ini.xml, hmc.prec_wilson.log.xml, hmc_new.prec_wilson.ini.xml, hmc_new.prec_wilson.log.xml, hmc_new.prec_wilson.metric.xml, regres.pl: Moved hmc_new.prec_wilson tests on to hmc.prec_wilson tests 2006-12-25 16:40 bjoo * aclocal.m4, configure, lib/Makefile.am, lib/io/io.h, lib/io/monomial_io.cc, lib/update/molecdyn/hamiltonian/abs_hamiltonian.h, lib/update/molecdyn/hamiltonian/exact_hamiltonian.cc, lib/update/molecdyn/hamiltonian/exact_hamiltonian.h, lib/update/molecdyn/hmc/abs_hmc.h, lib/update/molecdyn/hmc/lcm_hmc.h, lib/update/molecdyn/integrator/abs_integrator.h, lib/update/molecdyn/integrator/integrator.h, lib/update/molecdyn/integrator/integrator_aggregate.cc, lib/update/molecdyn/integrator/integrator_aggregate.h, lib/update/molecdyn/integrator/lcm_integrator_leaps.cc, lib/update/molecdyn/integrator/lcm_integrator_leaps.h, lib/update/molecdyn/integrator/lcm_minimum_norm2_integrator.cc, lib/update/molecdyn/integrator/lcm_minimum_norm2_integrator.h, lib/update/molecdyn/integrator/lcm_minimum_norm2_integrator_mts.cc, lib/update/molecdyn/integrator/lcm_minimum_norm2_integrator_mts.h, lib/update/molecdyn/integrator/lcm_minimum_norm2_qpq_integrator_mts.cc, lib/update/molecdyn/integrator/lcm_minimum_norm2_qpq_integrator_mts.h, lib/update/molecdyn/integrator/lcm_pqp_leapfrog.cc, lib/update/molecdyn/integrator/lcm_pqp_leapfrog.h, lib/update/molecdyn/integrator/lcm_pqp_leapfrog_mts.cc, lib/update/molecdyn/integrator/lcm_pqp_leapfrog_mts.h, lib/update/molecdyn/integrator/lcm_sexton_weingarten.cc, lib/update/molecdyn/integrator/lcm_sexton_weingarten.h, lib/update/molecdyn/integrator/lcm_sw_min_mixed.cc, lib/update/molecdyn/integrator/lcm_sw_min_mixed.h, lib/update/molecdyn/integrator/lcm_toplevel_integrator.h, lib/update/molecdyn/integrator/md_integrator_factory.h, mainprogs/main/Makefile.am, mainprogs/main/hmc.cc, mainprogs/tests/Makefile.am, mainprogs/tests/t_leapfrog.cc: Old MD Strip complete. New removed from names. Linkage problem in readNamedMonomialArray see if this will go away 2006-12-25 16:36 bjoo * mainprogs/tests/t_leapfrog.cc: Moved new t_leapfrog_component to t_leapfrog 2006-12-25 16:35 bjoo * mainprogs/tests/t_leapfrog_component.cc: Moving t_leapfrog_component to t_leapfrog 2006-12-25 16:34 bjoo * mainprogs/tests/t_leapfrog.cc: Removed old t_leapfrog.cc 2006-12-25 16:26 bjoo * mainprogs/main/: hmc.cc, hmc_new.cc: Removed old hmc.cc 2006-12-25 16:10 bjoo * lib/update/molecdyn/hmc/: abs_hmc.h, abs_hmc_new.h, hmc.h, lcm_hmc.h, lcm_hmc_new.h: MOved new HMC files in place of old 2006-12-25 16:08 bjoo * lib/update/molecdyn/hmc/: abs_hmc.h, hmc.h, lcm_hmc.h: Removed old HMC Files 2006-12-21 17:49 tag chroma3-21-1-pre-md-strip 2006-12-21 17:49 bjoo * aclocal.m4, configure: Remade autofiles with 1.9.2 2006-12-21 17:46 bjoo * aclocal.m4, configure, lib/Makefile.am, lib/update/molecdyn/integrator/integrator_aggregate.cc, lib/update/molecdyn/integrator/lcm_4mn5fp_recursive.cc, lib/update/molecdyn/integrator/lcm_4mn5fp_recursive.h, lib/update/molecdyn/integrator/lcm_4mn5fv_recursive.cc: Added 4MN5FP integrator 2006-12-20 15:23 bjoo * lib/update/molecdyn/integrator/: lcm_creutz_gocksch_4_recursive.cc, lcm_creutz_gocksch_4_recursive.h: Oops 2006-12-20 15:22 bjoo * lib/: Makefile.am, update/molecdyn/integrator/integrator_aggregate.cc: Added 4th order Creutz-Gocksch-Campostrini integrator 2006-12-20 14:14 bjoo * lib/Makefile.am: Makefile.am 2006-12-20 14:12 bjoo * lib/update/molecdyn/integrator/: integrator_aggregate.cc, lcm_4mn4fp_recursive.cc, lcm_4mn4fp_recursive.h, lcm_4mn5fv_recursive.h: Added 4th order minimum norm 4 force calculation position variant 2006-12-20 13:52 bjoo * lib/update/molecdyn/integrator/: lcm_4mn5fv_recursive.cc, lcm_4mn5fv_recursive.h: De Forcrand Takaishi 4th order 5 force Velocity Version Integrator 2006-12-11 12:20 edwards * lib/meas/hadron/: baryon_spinmat_funcmap_w.cc, baryon_spinmat_funcmap_w.h, simple_baryon_seqsrc_w.cc: Added a function-map for the baryon spin matrices. Now have a generic NUCL-NUCL and DELTA-DELTA sequential source. 2006-12-11 12:19 edwards * lib/Makefile.am: Added baryon_spinmat_funcmap_w.{h,cc} 2006-12-11 10:41 edwards * lib/meas/hadron/barspinmat_w.h: Added include of chromabase.h 2006-12-10 16:32 tag chroma3-21-1 2006-12-10 16:32 edwards * NEWS: Info on 3.21.1 2006-12-10 16:26 edwards * aclocal.m4, configure: Induced changes 2006-12-10 16:22 edwards * configure.ac: Changed to 3.21.1 2006-12-09 22:45 edwards * tests/chroma/hadron_s/propagator/klein_gordon.out.xml: Updated. 2006-12-09 21:06 edwards * lib/io/enum_io/enum_wvfkind_io.h: Moved obsolete enums into here. 2006-12-09 21:06 edwards * lib/io/enum_io/enum_wavetype_io.h: Moved obsolete enum into here. 2006-12-09 21:05 edwards * lib/io/: qprop_io.cc, qprop_io.h: Added a getMass() function. 2006-12-09 21:04 edwards * lib/: meas/smear/sink_smear2.cc, meas/smear/sink_smear2.h, meas/smear/smear.h, meas/smear/wvfkind.h, meas/sources/d_src_w.cc, meas/sources/d_src_w.h, meas/sources/maksrc2_w.cc, meas/sources/p_src_w.cc, meas/sources/p_src_w.h, meas/sources/sources.h, meas/sources/sources_w.h, meas/sources/srcsnktype.h, meas/sources/wavetype.h, io/io.h, io/smearing_io.cc, io/smearing_io.h, io/enum_io/enum_gaugebc_io.cc, io/enum_io/enum_gaugebc_io.h, io/enum_io/enum_io.h, io/enum_io/enum_srcsnktype_io.cc, io/enum_io/enum_srcsnktype_io.h: Removed obsolete files. 2006-12-09 21:04 edwards * lib/meas/hadron/: D_j_w.cc, D_j_w.h, DjDk_w.cc, DjDk_w.h, hadron_w.h: Removed obsolete D_j and DjDk files. 2006-12-09 21:04 edwards * lib/meas/hadron/group_baryon_operator_w.cc: Changed include of chroma.h to chromabase.h 2006-12-09 21:03 edwards * lib/meas/hadron/group_baryon_operator_w.h: Removed unused include of srcsnktype.h 2006-12-09 21:02 edwards * lib/meas/inline/hadron/: inline_hadron_aggregate.cc, inline_hadspec_w.cc, inline_hadspec_w.h, inline_mesonspec_w.cc, inline_mres_w.h, inline_qpropqio_w.h, inline_qqbar_w.h, inline_qqq_w.cc, inline_qqq_w.h, inline_spectrumQll.cc, inline_spectrumQll.h, inline_spectrum_w.cc, inline_spectrum_w.h, inline_static_light_spec_w.cc, inline_static_light_spec_w.h: Removed old sink_smear2.h includes. Changed all places that searched for a quark mass to now go through a getMass() function like getBC function. 2006-12-09 20:59 edwards * lib/meas/inline/hadron/: inline_qqqNucNuc_w.cc, inline_qqqNucNuc_w.h: Removed sink_smearing options. Now, the props are passed in already sink_smear. 2006-12-09 20:58 edwards * lib/meas/inline/hadron_s/inline_spectrum_s.cc: Removed unused sink_smear2.h 2006-12-09 20:56 edwards * lib/: util/gauge/stout_utils.h, actions/ferm/qprop/avp_altivecf_solver.cc, actions/ferm/qprop/avp_altivecf_solver.h, actions/ferm/qprop/avp_bgld_solver.cc, actions/ferm/qprop/avp_bgld_solver.h, actions/ferm/qprop/avp_bglf_solver.cc, actions/ferm/qprop/avp_bglf_solver.h, actions/ferm/qprop/quarkprop4_multi_w.h: Added doxygen comments. 2006-12-09 20:55 edwards * tests/regres.pl: Added qqq and qqqNucNuc. 2006-12-09 20:54 edwards * lib/Makefile.am: Removed some obsolete files. 2006-12-09 20:53 edwards * tests/chroma/hadron/: qqq/qqq.metric.xml, qqq/qqq.out.xml, qqq/regres.pl, qqqNucNuc/qqqNucNuc.ini.xml, qqqNucNuc/qqqNucNuc.metric.xml, qqqNucNuc/qqqNucNuc.out.xml, qqqNucNuc/regres.pl: New regression tests. 2006-12-09 18:19 edwards * tests/chroma/hadron/sink_smear/: sink_smearing.ini.xml, sink_smearing.out.xml: Updated. 2006-12-09 17:22 edwards * lib/actions/ferm/linop/klein_gordon_linop_s.cc: Typo fix. 2006-12-09 14:47 edwards * lib/actions/ferm/linop/klein_gordon_linop_s.cc: Fixed -0.5 in linop. 2006-12-09 13:31 edwards * other_libs/Makefile.am: Removed obsolete packages. 2006-12-09 13:30 edwards * aclocal.m4, configure: Induced changes 2006-12-09 13:29 edwards * configure.ac: Removed obsolete options. 2006-12-07 13:36 edwards * tests/chroma/hadron_s/propagator/: klein_gordon.ini.xml, klein_gordon.metric.xml, klein_gordon.out.xml, regres.pl: Added a Klein-Gordon operator. 2006-12-07 13:26 edwards * lib/Makefile.am: Added a klein-gordon fermact and linop. 2006-12-07 13:26 edwards * lib/actions/ferm/: fermacts/fermacts_aggregate_s.cc, fermacts/klein_gordon_fermact_s.cc, fermacts/klein_gordon_fermact_s.h, linop/klein_gordon_linop_s.cc, linop/klein_gordon_linop_s.h: Added a new Klein-Gordon operator. 2006-12-07 13:24 edwards * lib/actions/ferm/invert/syssolver_linop_cg.cc: Added a staggered version. 2006-12-06 11:56 edwards * tests/chroma/hadron/building_blocks/bb-deriv.out.xml: Updated. 2006-12-05 00:04 edwards * tests/chroma/hadron/building_blocks/: bb-baryon.out.xml, bb-deriv.out.xml, bb-meson.out.xml: Updated. 2006-12-05 00:00 edwards * tests/chroma/hadron/seqsource/: seqsource-meson.out.xml, seqsource-derivmeson.out.xml, seqsource-baryon.ini.pl, seqsource-baryon.ini.xml, seqsource-baryon.out.xml, seqsource-photon.out.xml: Updated. 2006-12-04 23:52 edwards * lib/meas/hadron/deriv_meson_seqsrc_w.cc: Fixed signs on the rho_2xYYY seqsources. 2006-12-04 15:43 edwards * tests/chroma/hadron/: building_blocks/bb-baryon.ini.pl, building_blocks/bb-baryon.ini.xml, building_blocks/bb-deriv.ini.pl, building_blocks/bb-deriv.ini.xml, building_blocks/bb-meson.ini.pl, building_blocks/bb-meson.ini.xml, seqsource/seqsource-baryon.ini.pl, seqsource/seqsource-baryon.ini.xml, seqsource/seqsource-derivmeson.ini.pl, seqsource/seqsource-derivmeson.ini.xml, seqsource/seqsource-meson.ini.pl, seqsource/seqsource-meson.ini.xml: Updated regressions. 2006-12-04 15:38 edwards * lib/meas/hadron/: deriv_meson_seqsrc_w.cc, deriv_meson_seqsrc_w.h: Added rho_2xYYY type seqsources. 2006-12-04 15:38 edwards * lib/meas/hadron/simple_meson_seqsrc_w.cc: Changed a0-b0 back to a0-a0_2 2006-12-04 15:38 edwards * lib/meas/hadron/spin_insertion_factory.h: Added doxygen comments. 2006-12-03 22:25 tag chroma3-21-0 2006-12-03 22:25 edwards * tests/chroma/hadron/building_blocks/: bb-deriv.ini.pl, bb-deriv.ini.xml, bb-deriv.out.xml: Updated to use new seqsources. 2006-12-03 16:55 juge * mainprogs/main/group_baryon_run.cc: This replaces gbaryonall2all.cc The subroutines are in group_baryon_operator_w.cc/h A final check on the phases is needed. 2006-12-03 15:33 edwards * lib/meas/hadron/: deriv_meson_seqsrc_w.cc, deriv_meson_seqsrc_w.h: Added more seqsources. Simplified interface by making new bases classes for the A1/A2 and T1/T2/E reps that actually hold the data. 2006-12-03 15:32 edwards * tests/chroma/hadron/seqsource/: seqsource-derivmeson.ini.pl, seqsource-derivmeson.ini.xml, seqsource-derivmeson.out.xml: Added more seqsources. 2006-12-03 12:41 edwards * lib/meas/hadron/: deriv_meson_seqsrc_w.cc, deriv_meson_seqsrc_w.h: Added new seqsrcs. 2006-12-02 16:42 edwards * tests/hmc/: hmc.prec_wilson.log.xml, hmc.prec_wilson.out.xml: Updated. 2006-12-02 16:38 edwards * tests/hmc/: hmc_new.prec_wilson.log.xml, hmc.prec_wilson.out.xml, regres.pl: Updated. 2006-12-02 16:34 edwards * tests/hmc/hmc.prec_wilson.out.xml: Updated 2006-12-02 16:19 edwards * tests/chroma/: eig/eigbnds.out.xml, eig/ritz_Hw-v1.out.xml, gfix/coulgauge/coulgauge.out.xml, glue/fuzwilp/fuzwilp.out.xml, glue/gaugestate/gaugestate.out.xml, glue/wilslp/wilslp.out.xml, hadron/bar3ptfn/bar3ptfn.out.xml, hadron/building_blocks/bb-baryon.out.xml, hadron/building_blocks/bb-deriv.out.xml, hadron/building_blocks/bb-meson.out.xml, hadron/fermstate/fermstate.out.xml, hadron/hadspec/hadspec.out.xml, hadron/make_source/dilute.out.xml, hadron/make_source/make_source.out.xml, hadron/make_source/source-deriv.out.xml, hadron/make_source/source-displace.out.xml, hadron/mesonspec/mesonspec.out.xml, hadron/mres/mres.out.xml, hadron/noisy_building_blocks/nbb.out.xml, hadron/propagator/prec_clover-stout3d.out.xml, hadron/propagator/prec_clover.out.xml, hadron/propagator/prec_dwf.out.xml, hadron/propagator/prec_ht_contfrac5d.out.xml, hadron/propagator/prec_ovext.out.xml, hadron/propagator/prec_ovlap_contfrac5d.out.xml, hadron/propagator/prec_parwilson.out.xml, hadron/propagator/prec_wilson-smearing.out.xml, hadron/propagator/prec_wilson-twisted.out.xml, hadron/propagator/prec_wilson.ferm.out.xml, hadron/propagator/prec_wilson.out.xml, hadron/propagator/prec_zolo_nef.out.xml, hadron/propagator/unprec-ovlap-zolo4d.out.xml, hadron/propagator/unprec-zolo-ev-multi.out.xml, hadron/propagator/unprec_clover.out.xml, hadron/propagator/unprec_dwftransf.out.xml, hadron/propagator/unprec_hamberwu.out.xml, hadron/propagator/unprec_ovext.out.xml, hadron/propagator/unprec_ovlap_contfrac5d.out.xml, hadron/propagator/unprec_zolo_nef.out.xml, hadron/seqsource/seqsource-baryon.out.xml, hadron/seqsource/seqsource-derivmeson.out.xml, hadron/seqsource/seqsource-meson.out.xml, hadron/seqsource/seqsource-photon.out.xml, hadron/sink_smear/sink-deriv.out.xml, hadron/sink_smear/sink-displace.out.xml, hadron/sink_smear/sink_smearing.out.xml, hadron/static_light/static_light.out.xml, hadron/static_light/static_light_pot.out.xml, hadron/stoch_baryon/stoch_baryon.out.xml, hadron/stoch_meson/stoch_meson.out.xml, hadron_s/make_source/make_source_s.out.xml, hadron_s/propagator/asqtad.out.xml, hadron_s/sink_smear/sink_smearing_s.out.xml, hadron_s/spectrum_s/spectrum_s.out.xml, io/nersc_read_obj/nersc_read_obj.out.xml, io/nersc_write_obj/nersc_write_obj.out.xml, io/qio_read_obj/qio_read_obj.out.xml, io/qio_write_obj/qio_write_obj.out.xml, io/szin_read_obj/szin_read_obj.out.xml, io/szin_write_obj/szin_write_obj.out.xml, schrfun/schrfun.out.xml, smear/link_smear/link_smear.out.xml: Updated tests. 2006-12-02 16:14 edwards * mainprogs/main/hmc_new.cc: Changed how Config_info is written. 2006-12-02 16:03 edwards * tests/chroma/: io/nersc_read_obj/nersc_read_obj.out.xml, io/nersc_write_obj/nersc_write_obj.out.xml, io/qio_read_obj/qio_read_obj.out.xml, io/qio_write_obj/qio_write_obj.out.xml, io/szin_read_obj/szin_read_obj.out.xml, io/szin_write_obj/szin_write_obj.out.xml, eig/eigbnds.out.xml, eig/ritz_Hw-v1.out.xml, gfix/coulgauge/coulgauge.out.xml, glue/fuzwilp/fuzwilp.out.xml, glue/gaugestate/gaugestate.out.xml, glue/wilslp/wilslp.out.xml, smear/link_smear/link_smear.out.xml: Updated. 2006-12-02 15:57 edwards * lib/meas/inline/hadron_s/inline_sink_smear_s.cc, scripts/regenerate.csh, tests/chroma/hadron/bar3ptfn/bar3ptfn.ini.xml, tests/chroma/hadron/building_blocks/bb-baryon.metric.xml, tests/chroma/hadron/building_blocks/bb-meson.metric.xml, tests/chroma/hadron/seqsource/seqsource-baryon.metric.xml, tests/chroma/hadron_s/sink_smear/sink_smearing_s.out.xml, tests/chroma/io/qio_read_obj/qio_read_obj.out.xml: Fixes. 2006-12-02 15:51 edwards * scripts/regenerate.csh: Removed dosisms. 2006-12-02 13:29 edwards * lib/io/qprop_io.cc: Removed the old "if path" stuff. 2006-12-02 13:23 edwards * aclocal.m4, configure: Induced changes 2006-12-02 13:22 edwards * configure.ac: Changed to 3.21.0 2006-12-02 13:21 edwards * lib/actions/ferm/linop/lwldslash_w_pab.cc: This is the hacked version I sent to Carsten Urbach. He claimed it worked on the UK QCDOC. Need to check at BNL. 2006-12-02 13:18 edwards * lib/: io/qprop_io.cc, io/qprop_io.h, meas/inline/hadron/inline_make_source_w.cc, meas/inline/hadron/inline_propagator_w.cc, meas/inline/hadron/inline_seqprop_test_w.cc, meas/inline/hadron/inline_seqprop_test_w.h, meas/inline/hadron/inline_seqsource_w.cc, meas/inline/hadron/inline_seqsource_w.h, meas/inline/hadron/inline_sink_smear_w.cc, meas/inline/hadron/inline_sink_smear_w.h, meas/inline/hadron_s/inline_sink_smear_s.cc: Cleaned up and standardized propagator headers. Removed StateInfo. 2006-12-02 13:16 edwards * lib/meas/: hadron/deriv_meson_seqsrc_w.cc, hadron/deriv_meson_seqsrc_w.h, hadron/simple_meson_seqsrc_w.cc, smear/deriv_quark_displacement_w.cc, smear/displace.cc, smear/displace.h: Collected together a unified version of rightNabla, rightD and rightB. Seqsources now appear to all work and have a 2-pt function test. 2006-12-02 13:13 edwards * lib/util/ferm/gammasgn_w.h: Indented. 2006-12-02 13:12 edwards * lib/Makefile.am: Added displace.{h,cc} 2006-12-02 13:12 edwards * mainprogs/main/: chroma.cc, hmc.cc: Added timings and made more uniform the output of Config_info. 2006-12-02 13:10 edwards * tests/chroma/hadron/building_blocks/bb-meson.out.xml: New regression output. 2006-12-02 13:09 edwards * tests/chroma/hadron/building_blocks/: bb.dat.xml, bb.ini.xml, bb.metric.xml, bb.out.xml: Removed - split apart. 2006-12-02 13:08 edwards * tests/chroma/hadron/building_blocks/bb-v2.dat.xml: Removed. 2006-12-02 13:08 edwards * tests/chroma/hadron/building_blocks/: bb-baryon.ini.pl, bb-baryon.ini.xml, bb-baryon.metric.xml, bb-baryon.out.xml, bb-deriv.ini.pl, bb-deriv.ini.xml, bb-deriv.metric.xml, bb-deriv.out.xml, bb-meson.ini.pl, bb-meson.ini.xml, bb-meson.metric.xml, regres.pl: New regression tests. 2006-12-02 12:18 edwards * tests/chroma/hadron/seqsource/: seqsource-meson.ini.pl, seqsource-meson.ini.xml, seqsource-meson.out.xml: Updated again using new naminv convention. 2006-12-01 23:09 edwards * lib/meas/sources/: pt_source_smearing.cc, sh_source_smearing.cc, source_smearing_factory.h: Added LatticeStaggeredPropagator and LatticePropagator versions. 2006-12-01 23:09 edwards * lib/meas/sources/source_const_factory.h: Rerranged order of decls. 2006-12-01 22:51 edwards * tests/chroma/hadron/seqsource/seqsource-photon.out.xml: Updated 2006-12-01 22:48 edwards * tests/chroma/hadron/seqsource/: seqsource-photon.ini.xml, seqsource-photon.out.xml: Changed to sink_mom=100 2006-12-01 22:44 edwards * tests/chroma/hadron/seqsource/: regres.pl, seqsource-baryon.ini.pl, seqsource-baryon.ini.xml, seqsource-baryon.metric.xml, seqsource-baryon.out.xml, seqsource-derivmeson.ini.pl, seqsource-derivmeson.ini.xml, seqsource-derivmeson.metric.xml, seqsource-derivmeson.out.xml, seqsource-meson.ini.csh, seqsource-meson.ini.pl, seqsource-meson.ini.xml, seqsource-meson.out.xml: New regression tests based on looking at the norm2_diff from the 3-pt loopback and a 2-pt evaluation. 2006-11-30 13:59 juge * lib/meas/hadron/group_baryon_operator_w.cc: Previous checkin didn't seem to work. (params.NdilReduce) 2006-11-30 11:48 edwards * tests/chroma/hadron/seqsource/: seqsource-meson.ini.csh, seqsource-meson.ini.xml, seqsource-meson.metric.xml, seqsource-meson.out.xml: New meson regression tests. 2006-11-30 11:42 edwards * tests/chroma/hadron/seqsource/seqsource-meson.ini.xml: New seqsource tests. 2006-11-30 09:32 juge * mainprogs/main/gbaryonall2all.cc: Now contains the routine that takes time-colour-spin dilution to time-dilution. 2006-11-30 09:30 juge * lib/meas/hadron/group_baryon_operator_w.h: Macro defs for removing dilutions were added. This is a temporary solution. The input perl script at the end was also changed... 2006-11-29 13:45 edwards * lib/meas/hadron/deriv_meson_seqsrc_w.cc: Moved base class functions to proper namespace. 2006-11-28 17:19 edwards * lib/meas/hadron/simple_meson_seqsrc_w.cc: Changed name of pion sequential source. 2006-11-28 17:17 edwards * lib/meas/hadron/simple_meson_seqsrc_w.cc: Further fixes. 2006-11-28 15:00 edwards * lib/meas/hadron/: simple_baryon_seqsrc_w.cc, simple_baryon_seqsrc_w.h, simple_meson_seqsrc_w.cc: More 2-pt support. 2006-11-28 15:00 edwards * lib/meas/inline/hadron/inline_seqprop_test_w.cc: Fixed a "push" and removed some debugging. 2006-11-28 14:30 edwards * lib/meas/inline/hadron/: inline_hadron_aggregate.cc, inline_seqprop_test_w.cc, inline_seqprop_test_w.h: New inline seqprop test. 2006-11-28 14:30 edwards * lib/meas/inline/hadron/inline_seqsource_w.h: Changed doxygen comment. 2006-11-28 14:30 edwards * lib/meas/inline/hadron/: inline_qpropadd_w.cc, inline_qpropadd_w.h: Made new factorA and factorB inputs, so now the code can compute propC = factorA*propA + factorB*propB 2006-11-28 14:28 edwards * lib/meas/hadron/: deriv_meson_seqsrc_w.h, hadron_seqsource.cc, hadron_seqsource.h, photon_seqsrc_w.h, simple_baryon_seqsrc_w.cc, simple_baryon_seqsrc_w.h, simple_meson_seqsrc_w.cc, simple_meson_seqsrc_w.h: Added a tieBack and twoPtSink function to HadronSeqSource. 2006-11-28 14:28 edwards * lib/meas/hadron/: barhqlq_w.cc, barhqlq_w.h: Made the 2-pt contractions visible in their own new namespace. 2006-11-28 14:27 edwards * lib/io/qprop_io.cc: Changed PropSinkSmear output name to PropSink. This has been causing havoc since the reader/writer have been inconsistent!! 2006-11-28 14:26 edwards * lib/io/qprop_io.h: Added comment 2006-11-28 14:26 edwards * lib/Makefile.am: Added inline_seqprop_test_w.{h,cc} 2006-11-28 11:58 bjoo * tests/regres.pl: oops again 2006-11-28 11:58 bjoo * tests/regres.pl: Redid autofiles 2006-11-28 11:51 bjoo * tests/regres.pl: Oops 2006-11-28 11:51 bjoo * aclocal.m4, configure: Remade autofiles 2006-11-28 11:49 bjoo * aclocal.m4, configure, lib/Makefile.am, lib/update/molecdyn/hmc/abs_hmc_new.h, lib/update/molecdyn/hmc/hmc.h, lib/update/molecdyn/hmc/lcm_hmc_new.h, lib/update/molecdyn/integrator/integrator.h, lib/update/molecdyn/integrator/lcm_toplevel_integrator.cc, lib/update/molecdyn/integrator/lcm_toplevel_integrator.h, mainprogs/main/Makefile.am, mainprogs/main/hmc_new.cc, tests/regres.pl: New HMC program 2006-11-28 11:45 bjoo * tests/hmc/: hmc_new.prec_wilson.ini.xml, hmc_new.prec_wilson.log.xml, hmc_new.prec_wilson.metric.xml, regres.pl: Added tests for new HMC 2006-11-28 09:08 bjoo * lib/meas/hadron/group_baryon_operator_w.cc: Merged with latest head revision. 2006-11-28 09:02 bjoo * lib/meas/inline/io/qio_read_obj_funcmap.cc: Added single prec writing functions 2006-11-27 15:13 edwards * tests/chroma/hadron/building_blocks/: bb-deriv.out.xml, bb.ini.xml, bb.out.xml: Updated tests. 2006-11-27 15:09 edwards * lib/meas/hadron/baryon_seqsrc_w.cc: Bug fix. Now have a call to gamma5Herm() before the sink projection. 2006-11-27 15:08 edwards * lib/meas/hadron/hadron_seqsource.cc: Split off phase stuff to a call to singlePhase(). 2006-11-27 15:07 edwards * lib/util/: ferm/gamma5_herm_w.cc, ferm/gamma5_herm_w.h, ft/ft.h, ft/single_phase.cc, ft/single_phase.h: New support routines. 2006-11-27 15:07 edwards * lib/Makefile.am: Added gamma5_herm_w.{h,cc} and single_phase.{h,cc} 2006-11-27 15:06 edwards * lib/meas/inline/hadron/inline_building_blocks_w.cc: Added some additional debugging. 2006-11-27 15:05 edwards * lib/meas/hadron/meson_seqsrc_w.cc: Removed unused code. 2006-11-27 00:52 edwards * lib/meas/hadron/simple_meson_seqsrc_w.cc: Added a conj() of phases() 2006-11-27 00:51 edwards * tests/chroma/hadron/seqsource/: seqsource-meson.ini.xml, seqsource-meson.out.xml: Updated to new sequential sources. 2006-11-27 00:30 edwards * tests/chroma/hadron/building_blocks/bb-deriv.metric.xml: Changed precision. 2006-11-27 00:21 juge * mainprogs/main/gbaryonall2all.cc: Quark orderings were not in sync with the Chroma_Input.txt file. 2006-11-26 23:33 edwards * lib/: Makefile.am, meas/hadron/barseqsrc_w.cc, meas/hadron/barseqsrc_w.h, meas/hadron/baryon_seqsrc_w.cc, meas/hadron/baryon_seqsrc_w.h, meas/hadron/deriv_meson_seqsrc_w.cc, meas/hadron/deriv_meson_seqsrc_w.h, meas/hadron/derivmesonseqsrc_w.cc, meas/hadron/derivmesonseqsrc_w.h, meas/hadron/hadron_seqsource.cc, meas/hadron/hadron_seqsource.h, meas/hadron/hadron_w.h, meas/hadron/meson_seqsrc_w.cc, meas/hadron/meson_seqsrc_w.h, meas/hadron/mesonseqsrc_w.cc, meas/hadron/mesonseqsrc_w.h, meas/hadron/photon_seqsrc_w.cc, meas/hadron/photon_seqsrc_w.h, meas/hadron/seqsource_aggregate_w.cc, meas/hadron/simple_baryon_seqsrc_w.cc, meas/hadron/simple_baryon_seqsrc_w.h, meas/hadron/simple_meson_seqsrc_w.cc, meas/hadron/simple_meson_seqsrc_w.h, meas/inline/hadron/inline_building_blocks_w.cc: Overhauled sequential sources. The meson-derivatives appear to work, but need some more tests of baryons and other mesons. 2006-11-26 23:31 edwards * lib/meas/inline/hadron_s/: inline_apply_fermstate_s.cc, inline_apply_fermstate_s.h, inline_hadron_aggregate_s.cc: Added staggered fermstates. 2006-11-26 23:29 edwards * tests/chroma/hadron/building_blocks/: bb.ini.xml, bb.out.xml: Changed input to write all to xmldat. 2006-11-26 23:27 edwards * tests/chroma/hadron/building_blocks/: bb-deriv.ini.xml, bb-deriv.metric.xml, bb.dat.xml: New regression tests. 2006-11-26 22:54 edwards * tests/chroma/hadron/building_blocks/: bb-deriv.ini.xml, bb-deriv.out.xml, regres.pl: New regression tests. 2006-11-26 21:56 juge * mainprogs/main/gbaryonall2all.cc: Compile the program that makes the source operator and sink operator separately now by #define's in the main program. 2006-11-26 20:28 juge * mainprogs/main/gbaryonall2all.cc: The source and sink operators can be made in different runs now. (there may not be enough disk space to accommodate both operators at the same time) 2006-11-26 19:58 juge * lib/meas/hadron/group_baryon_operator_w.cc: The complex conjugation of the creation operator coefficients are taken at the correlator level. 2006-11-25 14:44 tag chroma3-20-0 2006-11-25 14:44 edwards * NEWS: Info on 3.20.0 2006-11-23 16:55 juge * mainprogs/main/gbaryonall2all.cc: The first set of signs is correct ... 2006-11-23 11:17 edwards * lib/meas/hadron/simple_baryon_operator_w.h: Added a hack operator() to deal with Jimmy's hack in the base class. 2006-11-21 23:20 juge * mainprogs/main/gbaryonall2all.cc: Subsets are used to make the contraction at the source faster. 2006-11-21 23:17 juge * lib/meas/hadron/: baryon_operator.h, baryon_operator_factory_w.h, group_baryon_operator_w.cc, group_baryon_operator_w.h, simple_baryon_operator_w.cc: The contraction at the source is faster now if eigenvectors are not used. 2006-11-21 14:45 edwards * lib/meas/sources/mom_source_const.cc: Added sanity check of mom.size(). 2006-11-21 14:36 edwards * lib/meas/hadron/npr_vertex_w.cc: Bug fix - only gamma_5 adjoint B at the top level. 2006-11-21 13:42 edwards * lib/meas/hadron/npr_vertex_w.cc: Inserted missing "pop" in writing "Vertex". 2006-11-21 09:34 bjoo * other_libs/cg-dwf/: aclocal.m4, configure, configure.ac: Added -mbluelight flag to the BG/L build 2006-11-21 00:20 kostas * lib/: meas/smear/quark_displacement_aggregate.cc, meas/smear/quark_flavor_s.cc, meas/smear/quark_flavor_s.h, util/ferm/staggered_operators_s.cc, util/ferm/staggered_operators_s.h: compiles and runs... 2006-11-20 23:07 edwards * lib/meas/inline/hadron/inline_apply_fermstate_w.h: Changed doxygen comments. 2006-11-20 17:22 kostas * lib/meas/smear/quark_displacement_aggregate.cc: [no log message] 2006-11-20 17:13 kostas * aclocal.m4, lib/Makefile.am, lib/meas/smear/quark_flavor_s.cc, lib/meas/smear/quark_flavor_s.h: flavored source 2006-11-20 16:02 bjoo * lib/actions/ferm/qprop/: avp_inverter_interface.h, eoprec_dwf_qprop_array_cg_dwf_w.h: Added timing calls around the AVP interface 2006-11-20 14:43 bjoo * aclocal.m4, configure: Re autoconfiscated with automake192 2006-11-20 14:27 bjoo * tests/t_leapfrog/t_leapfrog_component.prec_wilson.ini.xml: New Way 2006-11-20 14:25 bjoo * aclocal.m4, configure, lib/Makefile.am, mainprogs/tests/t_leapfrog_component.cc: Checked in new MD Stuff 2006-11-20 14:15 bjoo * lib/update/molecdyn/integrator/: abs_integrator.h, integrator_shared.cc, integrator_shared.h, lcm_exp_sdt.cc, lcm_exp_sdt.h, lcm_exp_tdt.cc, lcm_exp_tdt.h, lcm_integrator_leaps.cc, lcm_integrator_leaps.h, lcm_min_norm2_recursive.cc, lcm_min_norm2_recursive.h, lcm_sts_leapfrog_recursive.cc, lcm_sts_leapfrog_recursive.h, lcm_toplevel_integrator.h, md_integrator_factory.h: Added in parallel structure for new way of doing things 2006-11-20 14:12 bjoo * lib/update/molecdyn/hamiltonian/: abs_hamiltonian.h, exact_hamiltonian.cc, exact_hamiltonian.h: Added parallel chain for new way of doing things 2006-11-20 11:22 edwards * lib/util/ferm/transf.cc: Fixed double prec. CvToFerm with colorvec -> stag-ferm. 2006-11-19 11:35 edwards * mainprogs/tests/t_disc_loop_s.cc: Fixed struct names to compile. 2006-11-19 08:10 juge * lib/meas/hadron/group_baryon_operator_w.cc: term_q.disp_len was already stored as negative for sources. 2006-11-19 07:34 juge * mainprogs/main/gbaryonall2all.cc: Smearing at the sink is only done once now for speed. 2006-11-19 00:01 kostas * lib/: Makefile.am, util/ferm/staggered_operators_s.cc: compiles 2006-11-18 23:59 edwards * mainprogs/tests/t_propagator_s.cc: Fixes to make compile. 2006-11-18 23:42 kostas * lib/util/ferm/staggered_operators_s.cc: needs debugging 2006-11-18 02:39 kostas * lib/util/ferm/: staggered_operators_s.cc, staggered_operators_s.h: almost done... 2006-11-18 01:43 juge * lib/meas/hadron/: group_baryon_operator_w.cc, group_baryon_operator_w.h: GroupBaryonOp has been cleaned up and smearing has been put in for both quark and gauge. 2006-11-18 00:55 juge * mainprogs/main/gbaryonall2all.cc: Quark and Gauge Link smearing added. 2006-11-18 00:41 kostas * lib/util/ferm/: staggered_operators_s.cc, staggered_operators_s.h: first pass 2006-11-17 23:56 kostas * lib/meas/inline/hadron/inline_stag_to_wils.cc: touch up 2006-11-17 23:40 kostas * aclocal.m4, lib/Makefile.am, lib/actions/ferm/qprop/quarkprop4_s.cc, lib/meas/inline/hadron/inline_hadron_aggregate.cc, lib/meas/inline/hadron/inline_stag_to_wils.cc, lib/meas/inline/hadron/inline_stag_to_wils.h: added new task 2006-11-17 21:48 kostas * lib/actions/ferm/invert/invcg1.cc: [no log message] 2006-11-17 21:46 kostas * lib/actions/ferm/qprop/eoprec_staggered_qprop.h: fixed true residual 2006-11-17 21:33 kostas * lib/actions/ferm/linop/: asq_dsl_s.cc, asqtad_linop_s.cc: added flop count 2006-11-17 16:03 kostas * lib/actions/ferm/invert/invcg1.cc, lib/actions/ferm/qprop/eoprec_staggered_qprop.h, other_libs/cg-dwf/aclocal.m4: [no log message] 2006-11-17 11:23 edwards * lib/meas/inline/hadron/inline_mesonspec_w.cc: Added printout of xml_file 2006-11-17 11:20 edwards * tests/chroma/hadron/mres/mres.out.xml: Updated output. 2006-11-17 09:39 edwards * lib/meas/inline/hadron_s/inline_spectrum_s.cc, mainprogs/tests/t_disc_loop_s.cc, mainprogs/tests/t_propagator_s.cc: Added fixes for new use of Asqtad fermact. 2006-11-17 09:23 bjoo * other_libs/cg-dwf/: acinclude.m4, aclocal.m4, cg-dwf-config-internal.h.in, cg-dwf-config.in, configure, configure.ac: Fixed some autoconf magic and the cg-dwf-config.in script 2006-11-16 21:55 edwards * lib/meas/smear/: deriv_quark_displacement_s.cc, deriv_quark_displacement_s.h, quark_displacement_aggregate.cc: Added staggered derivatives/displacements. 2006-11-16 21:54 edwards * lib/actions/ferm/linop/: asqtad_linop_s.cc, asqtad_linop_s.h: Added call to nflops, but currently returns 0. 2006-11-16 21:53 edwards * lib/Makefile.am: Added deriv_quark_displacement_s.* 2006-11-16 21:53 edwards * tests/chroma/hadron_s/make_source/: make_source_s.ini.xml, make_source_s.metric.xml, make_source_s.out.xml: Updated test. 2006-11-16 21:17 edwards * lib/: actions/boson/operator/klein_gord.cc, actions/boson/operator/klein_gord.h, actions/ferm/fermacts/asqtad_fermact_s.cc, actions/ferm/fermacts/asqtad_fermact_s.h, actions/ferm/fermacts/fermact_factory_s.h, actions/ferm/fermacts/fermacts_aggregate_s.cc, actions/ferm/fermacts/fermacts_aggregate_s.h, actions/ferm/fermacts/fermacts_s.h, actions/ferm/fermstates/ferm_createstate_aggregate_s.h, meas/inline/hadron/inline_mres_w.cc, meas/inline/hadron/inline_qpropqio_w.cc, meas/inline/hadron/inline_qqbar_w.cc, meas/inline/hadron/inline_qqq_w.cc, meas/inline/hadron_s/hadron_s.h, meas/inline/hadron_s/inline_hadron_aggregate_s.cc, meas/inline/hadron_s/inline_make_source_s.cc, meas/inline/hadron_s/inline_make_source_s.h, meas/inline/hadron_s/inline_propagator_s.cc, meas/inline/hadron_s/inline_propagator_s.h, meas/inline/hadron_s/inline_sink_smear_s.cc, meas/inline/hadron_s/inline_sink_smear_s.h, meas/inline/hadron_s/inline_spectrum_s.cc, meas/sinks/pt_sink_smearing.cc, meas/sinks/sh_sink_smearing.cc, meas/sinks/sink_smearing_factory.h, meas/smear/gaus_quark_smearing.cc, meas/smear/gaus_smear.cc, meas/smear/gaus_smear.h, meas/smear/no_quark_displacement.cc, meas/smear/no_quark_smearing.cc, meas/smear/quark_displacement_factory.h, meas/smear/quark_smearing_factory.h, meas/smear/simple_quark_displacement.cc, meas/sources/pt_source_const.cc, meas/sources/sh_source_const.cc, meas/sources/source_const_factory.h: Added staggered support in a new make_source, propagator, sink_smearing chain. Fixed up asqtad_fermact to fit in this model. 2006-11-16 21:14 edwards * configure.ac: Changed to 3.20.0 2006-11-16 21:14 edwards * aclocal.m4, configure: Induced changes 2006-11-16 21:11 edwards * lib/Makefile.am: Added staggered versions of make_source, propagator, and sink_smearing. 2006-11-16 21:10 edwards * tests/: regres.pl, chroma/hadron_s/make_source/make_source_s.ini.xml, chroma/hadron_s/make_source/make_source_s.metric.xml, chroma/hadron_s/make_source/make_source_s.out.xml, chroma/hadron_s/make_source/regres.pl, chroma/hadron_s/propagator/asqtad.ini.xml, chroma/hadron_s/propagator/asqtad.metric.xml, chroma/hadron_s/propagator/asqtad.out.xml, chroma/hadron_s/propagator/regres.pl, chroma/hadron_s/sink_smear/sink_smearing_s.ini.xml, chroma/hadron_s/sink_smear/sink_smearing_s.metric.xml, chroma/hadron_s/sink_smear/sink_smearing_s.out.xml, chroma/hadron_s/sink_smear/regres.pl: New staggered regression tests. 2006-11-16 15:39 bjoo * lib/: Makefile.am, actions/ferm/linop/lwldslash_array_pab_w.cc, actions/ferm/linop/lwldslash_w_pab.cc, io/monomial_io.cc, io/monomial_io.h, update/molecdyn/hamiltonian/abs_hamiltonian.h: Added Timing Hacks 2006-11-16 15:39 bjoo * lib/actions/ferm/invert/: invcg2_timing_hacks.cc, invcg2_timing_hacks.h, syssolver_linop_aggregate.cc, syssolver_linop_cg_timing.cc, syssolver_linop_cg_timing.h, syssolver_mdagm_aggregate.cc, syssolver_mdagm_cg_timing.cc, syssolver_mdagm_cg_timing.h: Timing Hacks 2006-11-16 14:49 kostas * lib/actions/ferm/fermacts/: asqtad_fermact_params_s.cc, asqtad_fermact_params_s.h: asqtad parameters 2006-11-09 22:10 edwards * lib/meas/sources/mom_source_const.cc: Changed walfil call to an internal call for a boxfil. 2006-11-09 21:37 edwards * lib/meas/hadron/group_baryon_operator_w.cc: Commented out debugging comment in registration. 2006-11-08 18:54 bjoo * lib/Makefile.am: Makefile.am etc 2006-11-08 18:51 bjoo * tests/t_leapfrog/t_leapfrog_component.prec_wilson.ini.xml: modified component ini file 2006-11-08 18:48 bjoo * lib/update/molecdyn/integrator/: lcm_sts_leapfrog_component.cc, lcm_sts_leapfrog_component.h: I removed the component versions now that the recursive versions can cope with a base case 2006-11-08 18:46 bjoo * lib/update/molecdyn/integrator/: integrator_aggregate.cc, lcm_min_norm2_recursive.cc, lcm_min_norm2_recursive.h, lcm_sts_leapfrog_component.cc, lcm_sts_leapfrog_recursive.cc: Minimum norm integrators 2006-11-07 21:47 edwards * tests/regres.pl: Added static_light regression tests. 2006-11-07 21:46 edwards * tests/chroma/hadron/static_light/: static_light.dat.xml, static_light.metric.xml, static_light.out.xml, static_light_pot.dat.xml, static_light_pot.metric.xml, static_light_pot.out.xml: New regression tests. 2006-11-07 18:16 bjoo * configure, lib/update/molecdyn/hmc/abs_hmc.h, mainprogs/tests/t_leapfrog.cc, tests/t_leapfrog/t_leapfrog_component.prec_wilson.ini.xml: commit of Makefile.ins 2006-11-07 18:16 bjoo * aclocal.m4, lib/Makefile.am, mainprogs/tests/Makefile.am: commit of Makefile.am etc 2006-11-07 18:14 bjoo * tests/t_leapfrog/t_leapfrog_component.prec_wilson.log.xml: Test Files for Component integrator program t_leapfrog_component 2006-11-07 18:12 bjoo * mainprogs/tests/t_leapfrog_component.cc: New t-leapfrog for component inegrator testing 2006-11-07 18:11 edwards * tests/chroma/hadron/static_light/regres.pl: Added tests. 2006-11-07 18:11 bjoo * lib/update/molecdyn/integrator/: abs_integrator.h, integrator_aggregate.cc, integrator_aggregate.h, lcm_exp_sdt.cc, lcm_exp_sdt.h, lcm_exp_tdt.cc, lcm_exp_tdt.h, lcm_minimum_norm2_integrator.h, lcm_minimum_norm2_integrator_mts.h, lcm_minimum_norm2_qpq_integrator_mts.h, lcm_pqp_leapfrog_mts.h, lcm_sexton_weingarten.h, lcm_sts_leapfrog_component.cc, lcm_sts_leapfrog_component.h, lcm_sts_leapfrog_recursive.cc, lcm_sts_leapfrog_recursive.h, md_integrator_factory.h: New Integrator bits 2006-11-07 18:09 edwards * tests/chroma/hadron/static_light/: static_light.metric.xml, static_light_pot.metric.xml: Fixed tests. 2006-11-07 17:36 edwards * mainprogs/main/propagator_comp.cc: Removed Log info. 2006-11-07 16:50 edwards * mainprogs/: tests/t_formfac.cc, tests/t_mesons_w.cc, main/collect_multi_propcomp.cc, main/multi_propagator_comp.cc: Removed Log stuff. 2006-11-07 16:40 edwards * mainprogs/main/Makefile.am: Demoted some programs to check_PROGRAMS instead of bin_PROGRAMS. They are not in active use and just take up disk space. They are built as a part of make check. 2006-11-07 00:26 tag chroma3-19-1 2006-11-07 00:26 edwards * aclocal.m4, configure: Induced changes 2006-11-07 00:25 edwards * configure.ac: Changed to 3.19.1 2006-11-07 00:25 edwards * NEWS: Info on 3.19.1 2006-11-07 00:22 edwards * lib/actions/ferm/qprop/eoprec_dwf_qprop_array_cg_dwf_w.h: Fixed adding of cg counts to res.n_count - sum both single and double. 2006-11-06 23:02 edwards * tests/chroma/hadron/static_light/static_light.metric.xml: First pass - not finished yet. 2006-11-06 12:22 juge * mainprogs/main/gbaryonall2all.cc: Driver file which works without any smearing. 2006-11-06 12:14 juge * lib/meas/hadron/: group_baryon_operator_w.cc, group_baryon_operator_w.h: Input has changed (as well as the perl script that makes the input file). This version appears to work if I leave out the smearings. 2006-11-04 00:38 edwards * README: Small update on current versions. 2006-11-04 00:12 edwards * lib/meas/sources/mom_source_const.cc: Fixes. No compiles. 2006-11-04 00:08 edwards * lib/Makefile.am: Added mom_source_const.{h,cc} 2006-11-04 00:06 edwards * lib/meas/inline/hadron/inline_hadron_aggregate.cc: Added Npr vertex. 2006-11-04 00:04 edwards * lib/meas/sources/source_const_aggregate.cc: Added momentum-wall. 2006-11-03 23:42 edwards * lib/meas/hadron/npr_vertex_w.cc: Fixed write of scalar. 2006-11-03 15:21 hwlin * lib/meas/inline/hadron/inline_npr_w.h: Induced Changes 2006-11-03 15:18 hwlin * lib/: Makefile.am, meas/hadron/npr_vertex_w.h, meas/hadron/npr_vertex_w.cc, meas/inline/hadron/inline_npr_vertex_w.cc: Added npr_vertex.xx and inline_npr_vertex_w.xx to the build and made them compile. There is a QIO annoyance left in npr_vertex_w.cc where we want to IO just one sites worth of propagator. 2006-11-03 10:22 edwards * lib/actions/ferm/linop/clover_term_qdp_w.cc: Added another clover term variant. 2006-11-02 17:29 edwards * lib/meas/inline/hadron/inline_npr_vertex_w.cc: Changed named of task. 2006-11-02 17:26 edwards * lib/meas/: hadron/npr_vertex_w.cc, hadron/npr_vertex_w.h, inline/hadron/inline_npr_vertex_w.cc, inline/hadron/inline_npr_vertex_w.h: Near complete version - not yet tested or compiled. 2006-11-02 14:24 edwards * lib/actions/ferm/linop/clover_term_qdp_w.cc: Added unrolled version of clover term. 2006-10-31 23:42 edwards * lib/meas/hadron/group_baryon_operator_w.cc: Removed some debugging. Indented some. 2006-10-31 16:10 bjoo * install_scripts/chroma-3.17.spec: Added SPECS file for building scalar RPM 2006-10-31 10:01 tag chroma3-19-0 2006-10-31 10:01 edwards * NEWS: Info on 3.19.0 2006-10-31 10:00 edwards * NEWS: Info on 3.18.0 2006-10-30 17:32 edwards * lib/meas/hadron/npr_vertex_w.h: Fix. 2006-10-30 17:31 edwards * lib/meas/: hadron/npr_vertex_w.cc, hadron/npr_vertex_w.h, inline/hadron/inline_npr_vertex_w.cc, inline/hadron/inline_npr_vertex_w.h: First versions of NPR code. 2006-10-30 16:59 edwards * lib/meas/sources/: mom_source_const.cc, mom_source_const.h, source_const_aggregate.cc: Added momentum wall sources. 2006-10-28 01:13 kostas * lib/meas/inline/hadron/: inline_npr_w.cc, inline_npr_w.h: bit more.. 2006-10-28 00:42 kostas * lib/meas/inline/hadron/: inline_npr_w.cc, inline_npr_w.h: little more progress 2006-10-27 00:12 kostas * lib/meas/inline/hadron/: inline_npr_w.cc, inline_npr_w.h: added the make source bit for the derivative source 2006-10-26 23:02 juge * lib/meas/hadron/group_baryon_operator_w.h: disp_ind added to QuarkTerm_t to index disp_quarks. 2006-10-26 23:01 juge * lib/meas/hadron/group_baryon_operator_w.cc: disp_ind added to QuarkTerm_t for use with disp_quarks. 2006-10-26 17:20 kostas * lib/meas/inline/hadron/: inline_npr_w.cc, inline_npr_w.h: initial version 2006-10-26 00:36 kostas * lib/meas/hadron/BuildingBlocks_w.cc: Fixed up the translation flag. Code is working on free field 2006-10-24 17:58 edwards * lib/meas/hadron/group_baryon_operator_w.cc: Changed debugging comments to use QDPIO::cout instead of just cout. 2006-10-24 00:45 edwards * lib/actions/ferm/invert/minvcg.cc: Added memory hints. 2006-10-24 00:32 edwards * lib/actions/ferm/invert/minvcg.cc: Make sure to stop timer in trivial case. 2006-10-24 00:23 edwards * lib/actions/ferm/invert/minvcg.cc: Added timing and flopcount. 2006-10-23 14:03 juge * lib/meas/hadron/group_baryon_operator_w.cc: The source file with only one term in the sink operator. Not complete yet. 2006-10-23 14:02 juge * lib/meas/hadron/group_baryon_operator_w.h: Newer version with only one term for the sink operator. (and other corrections) 2006-10-23 14:00 juge * mainprogs/main/gbaryonall2all.cc: A template file for the driver for all-to-all group baryon operators program. 2006-10-22 17:31 edwards * lib/update/molecdyn/monomial/eoprec_constdet_one_flavor_rat_monomial_w.cc: Removed debugging cout statement. 2006-10-20 17:29 edwards * tests/chroma/hadron/propagator/: prec_clover-stout3d.metric.xml, prec_clover-stout3d.out.xml, regres.pl: Added stout smear state. 2006-10-20 12:57 edwards * lib/util/gauge/stout_utils.cc: Removed diagnostic comment. 2006-10-19 13:42 edwards * lib/actions/ferm/qprop/eoprec_dwf_qprop_array_cg_dwf_w.h: More pathname fixes. 2006-10-19 13:39 edwards * lib/actions/ferm/qprop/dwf_qpropt_w.h: Pathname fixes. 2006-10-19 13:36 edwards * lib/: actions/ferm/fermacts/fermacts_aggregate_w.cc, actions/ferm/qprop/asqtad_qprop.h, actions/ferm/qprop/dwf_fermact_qprop_array_w.cc, actions/ferm/qprop/staggered_qprop.cc, update/molecdyn/monomial/monomial_aggregate_w.cc: Pathname fixes. 2006-10-19 12:02 edwards * aclocal.m4, configure: Induced changes 2006-10-19 12:01 edwards * configure, configure.ac, lib/Makefile.am, lib/eo_linop.h, lib/eo_prec_linop.h, lib/eoprec_constdet_linop.h, lib/eoprec_constdet_wilstype_fermact_w.h, lib/eoprec_linop.h, lib/eoprec_logdet_linop.h, lib/eoprec_logdet_wilstype_fermact_w.h, lib/eoprec_wilstype_fermact_w.h, lib/fermact.h, lib/fermact.orig.h, lib/lib.h, lib/linearop.h, lib/lmdagm.h, lib/polyfermact.h, lib/prec_constdet_linop.h, lib/prec_logdet_linop.h, lib/stagtype_fermact_s.h, lib/teoprec_linop.h, lib/teoprec_logdet_linop.h, lib/tprec_linop.h, lib/tprec_logdet_linop.h, lib/tpreclinop.h, lib/unprec_wilstype_fermact_w.h, lib/wilstype_fermact_w.h, lib/wilstype_polyfermact_w.h, lib/actions/ferm/fermacts/asqtad_fermact_s.h, lib/actions/ferm/fermacts/eoprec_clover_extfield_fermact_w.cc, lib/actions/ferm/fermacts/eoprec_clover_extfield_fermact_w.h, lib/actions/ferm/fermacts/eoprec_clover_fermact_w.cc, lib/actions/ferm/fermacts/eoprec_clover_fermact_w.h, lib/actions/ferm/fermacts/eoprec_dwf_fermact_array_w.cc, lib/actions/ferm/fermacts/eoprec_dwf_fermact_array_w.h, lib/actions/ferm/fermacts/eoprec_dwf_fermact_base_array_w.h, lib/actions/ferm/fermacts/eoprec_ht_contfrac5d_fermact_array_w.cc, lib/actions/ferm/fermacts/eoprec_ht_contfrac5d_fermact_array_w.h, lib/actions/ferm/fermacts/eoprec_kno_fermact_array_w.cc, lib/actions/ferm/fermacts/eoprec_kno_fermact_array_w.h, lib/actions/ferm/fermacts/eoprec_nef_fermact_array_w.cc, lib/actions/ferm/fermacts/eoprec_nef_fermact_array_w.h, lib/actions/ferm/fermacts/eoprec_ovdwf_fermact_array_w.cc, lib/actions/ferm/fermacts/eoprec_ovdwf_fermact_array_w.h, lib/actions/ferm/fermacts/eoprec_ovext_fermact_array_w.cc, lib/actions/ferm/fermacts/eoprec_ovext_fermact_array_w.h, lib/actions/ferm/fermacts/eoprec_ovlap_contfrac5d_fermact_array_w.cc, lib/actions/ferm/fermacts/eoprec_ovlap_contfrac5d_fermact_array_w.h, lib/actions/ferm/fermacts/eoprec_parwilson_fermact_w.cc, lib/actions/ferm/fermacts/eoprec_parwilson_fermact_w.h, lib/actions/ferm/fermacts/eoprec_slic_fermact_w.cc, lib/actions/ferm/fermacts/eoprec_slic_fermact_w.h, lib/actions/ferm/fermacts/eoprec_wilson_fermact_w.cc, lib/actions/ferm/fermacts/eoprec_wilson_fermact_w.h, lib/actions/ferm/fermacts/eoprec_zolo_nef_fermact_array_w.cc, lib/actions/ferm/fermacts/eoprec_zolo_nef_fermact_array_w.h, lib/actions/ferm/fermacts/fermact_factory_w.h, lib/actions/ferm/fermacts/fermacts_w.h, lib/actions/ferm/fermacts/overlap_fermact_base_w.h, lib/actions/ferm/fermacts/ovlap_partfrac4d_fermact_w.h, lib/actions/ferm/fermacts/poly_cheb_fermact_w.h, lib/actions/ferm/fermacts/prec_clover_extfield_fermact_w.cc, lib/actions/ferm/fermacts/prec_clover_extfield_fermact_w.h, lib/actions/ferm/fermacts/prec_clover_fermact_w.cc, lib/actions/ferm/fermacts/prec_clover_fermact_w.h, lib/actions/ferm/fermacts/prec_dwf_fermact_array_w.cc, lib/actions/ferm/fermacts/prec_dwf_fermact_array_w.h, lib/actions/ferm/fermacts/prec_dwf_fermact_base_array_w.h, lib/actions/ferm/fermacts/prec_ht_contfrac5d_fermact_array_w.cc, lib/actions/ferm/fermacts/prec_ht_contfrac5d_fermact_array_w.h, lib/actions/ferm/fermacts/prec_kno_fermact_array_w.cc, lib/actions/ferm/fermacts/prec_kno_fermact_array_w.h, lib/actions/ferm/fermacts/prec_nef_fermact_array_w.cc, lib/actions/ferm/fermacts/prec_nef_fermact_array_w.h, lib/actions/ferm/fermacts/prec_ovdwf_fermact_array_w.cc, lib/actions/ferm/fermacts/prec_ovdwf_fermact_array_w.h, lib/actions/ferm/fermacts/prec_ovext_fermact_array_w.cc, lib/actions/ferm/fermacts/prec_ovext_fermact_array_w.h, lib/actions/ferm/fermacts/prec_ovlap_contfrac5d_fermact_array_w.cc, lib/actions/ferm/fermacts/prec_ovlap_contfrac5d_fermact_array_w.h, lib/actions/ferm/fermacts/prec_parwilson_fermact_w.cc, lib/actions/ferm/fermacts/prec_parwilson_fermact_w.h, lib/actions/ferm/fermacts/prec_slic_fermact_w.cc, lib/actions/ferm/fermacts/prec_slic_fermact_w.h, lib/actions/ferm/fermacts/prec_wilson_fermact_w.cc, lib/actions/ferm/fermacts/prec_wilson_fermact_w.h, lib/actions/ferm/fermacts/prec_zolo_nef_fermact_array_w.cc, lib/actions/ferm/fermacts/prec_zolo_nef_fermact_array_w.h, lib/actions/ferm/fermacts/stag_fermact_s.h, lib/actions/ferm/fermacts/tprec_wilson_fermact_w.cc, lib/actions/ferm/fermacts/tprec_wilson_fermact_w.h, lib/actions/ferm/fermacts/unprec_clover_fermact_w.h, lib/actions/ferm/fermacts/unprec_dwf_fermact_array_w.h, lib/actions/ferm/fermacts/unprec_dwf_fermact_base_array_w.h, lib/actions/ferm/fermacts/unprec_dwftransf_fermact_w.h, lib/actions/ferm/fermacts/unprec_hamberwu_fermact_w.h, lib/actions/ferm/fermacts/unprec_ht_contfrac5d_fermact_array_w.h, lib/actions/ferm/fermacts/unprec_nef_fermact_array_w.h, lib/actions/ferm/fermacts/unprec_ovdwf_fermact_array_w.h, lib/actions/ferm/fermacts/unprec_ovext_fermact_array_w.h, lib/actions/ferm/fermacts/unprec_ovlap_contfrac5d_fermact_array_w.h, lib/actions/ferm/fermacts/unprec_parwilson_fermact_w.h, lib/actions/ferm/fermacts/unprec_w12_fermact_w.h, lib/actions/ferm/fermacts/unprec_wilson_fermact_w.h, lib/actions/ferm/fermacts/unprec_zolo_nef_fermact_array_w.h, lib/actions/ferm/linop/asqtad_linop_s.h, lib/actions/ferm/linop/eoprec_clover_extfield_linop_w.cc, lib/actions/ferm/linop/eoprec_clover_extfield_linop_w.h, lib/actions/ferm/linop/eoprec_clover_linop_w.cc, lib/actions/ferm/linop/eoprec_clover_linop_w.h, lib/actions/ferm/linop/eoprec_dwf_linop_array_w.cc, lib/actions/ferm/linop/eoprec_dwf_linop_array_w.h, lib/actions/ferm/linop/eoprec_dwflike_linop_base_array_w.h, lib/actions/ferm/linop/eoprec_ht_contfrac5d_linop_array_w.cc, lib/actions/ferm/linop/eoprec_ht_contfrac5d_linop_array_w.h, lib/actions/ferm/linop/eoprec_nef_general_linop_array_w.cc, lib/actions/ferm/linop/eoprec_nef_general_linop_array_w.h, lib/actions/ferm/linop/eoprec_nef_linop_array_w.cc, lib/actions/ferm/linop/eoprec_nef_linop_array_w.h, lib/actions/ferm/linop/eoprec_ovdwf_linop_array_w.cc, lib/actions/ferm/linop/eoprec_ovdwf_linop_array_w.h, lib/actions/ferm/linop/eoprec_ovext_linop_array_w.cc, lib/actions/ferm/linop/eoprec_ovext_linop_array_w.h, lib/actions/ferm/linop/eoprec_ovlap_contfrac5d_linop_array_opt_w.cc, lib/actions/ferm/linop/eoprec_ovlap_contfrac5d_linop_array_opt_w.h, lib/actions/ferm/linop/eoprec_ovlap_contfrac5d_linop_array_w.cc, lib/actions/ferm/linop/eoprec_ovlap_contfrac5d_linop_array_w.h, lib/actions/ferm/linop/eoprec_ovlap_contfrac5d_linop_base_array_w.cc, lib/actions/ferm/linop/eoprec_ovlap_contfrac5d_linop_base_array_w.h, lib/actions/ferm/linop/eoprec_ovlap_contfrac5d_pv_linop_array_w.cc, lib/actions/ferm/linop/eoprec_ovlap_contfrac5d_pv_linop_array_w.h, lib/actions/ferm/linop/eoprec_parwilson_linop_w.cc, lib/actions/ferm/linop/eoprec_parwilson_linop_w.h, lib/actions/ferm/linop/eoprec_slic_linop_w.cc, lib/actions/ferm/linop/eoprec_slic_linop_w.h, lib/actions/ferm/linop/eoprec_wilson_linop_w.cc, lib/actions/ferm/linop/eoprec_wilson_linop_w.h, lib/actions/ferm/linop/lDeltaLs_w.h, lib/actions/ferm/linop/lg5eps_double_pass_w.h, lib/actions/ferm/linop/lg5eps_w.h, lib/actions/ferm/linop/linop_w.h, lib/actions/ferm/linop/lovddag_double_pass_w.h, lib/actions/ferm/linop/lovddag_w.h, lib/actions/ferm/linop/lovlap_double_pass_w.h, lib/actions/ferm/linop/lovlapms_w.h, lib/actions/ferm/linop/ovlap_contfrac5d_w.h, lib/actions/ferm/linop/prec_clover_extfield_linop_w.cc, lib/actions/ferm/linop/prec_clover_extfield_linop_w.h, lib/actions/ferm/linop/prec_clover_linop_w.cc, lib/actions/ferm/linop/prec_clover_linop_w.h, lib/actions/ferm/linop/prec_dwf_linop_array_w.cc, lib/actions/ferm/linop/prec_dwf_linop_array_w.h, lib/actions/ferm/linop/prec_dwflike_linop_base_array_w.h, lib/actions/ferm/linop/prec_ht_contfrac5d_linop_array_w.cc, lib/actions/ferm/linop/prec_ht_contfrac5d_linop_array_w.h, lib/actions/ferm/linop/prec_nef_general_linop_array_w.cc, lib/actions/ferm/linop/prec_nef_general_linop_array_w.h, lib/actions/ferm/linop/prec_nef_linop_array_w.cc, lib/actions/ferm/linop/prec_nef_linop_array_w.h, lib/actions/ferm/linop/prec_ovdwf_linop_array_w.cc, lib/actions/ferm/linop/prec_ovdwf_linop_array_w.h, lib/actions/ferm/linop/prec_ovext_linop_array_w.cc, lib/actions/ferm/linop/prec_ovext_linop_array_w.h, lib/actions/ferm/linop/prec_ovlap_contfrac5d_linop_array_opt_w.cc, lib/actions/ferm/linop/prec_ovlap_contfrac5d_linop_array_opt_w.h, lib/actions/ferm/linop/prec_ovlap_contfrac5d_linop_array_w.cc, lib/actions/ferm/linop/prec_ovlap_contfrac5d_linop_array_w.h, lib/actions/ferm/linop/prec_ovlap_contfrac5d_linop_base_array_w.cc, lib/actions/ferm/linop/prec_ovlap_contfrac5d_linop_base_array_w.h, lib/actions/ferm/linop/prec_ovlap_contfrac5d_pv_linop_array_w.cc, lib/actions/ferm/linop/prec_ovlap_contfrac5d_pv_linop_array_w.h, lib/actions/ferm/linop/prec_parwilson_linop_w.cc, lib/actions/ferm/linop/prec_parwilson_linop_w.h, lib/actions/ferm/linop/prec_slic_linop_w.cc, lib/actions/ferm/linop/prec_slic_linop_w.h, lib/actions/ferm/linop/prec_wilson_linop_w.cc, lib/actions/ferm/linop/prec_wilson_linop_w.h, lib/actions/ferm/linop/tprec_wilson_linop_w.cc, lib/actions/ferm/linop/tprec_wilson_linop_w.h, lib/actions/ferm/linop/unprec_ovlap_contfrac5d_linop_array_w.h, lib/actions/ferm/linop/unprec_ovlap_contfrac5d_nonhermop_array_w.h, lib/actions/ferm/linop/unprec_ovlap_contfrac5d_pv_linop_array_w.h, lib/actions/ferm/linop/unprec_pdwf4d_linop_w.h, lib/actions/ferm/linop/unprec_ppdwf4d_linop_w.h, lib/actions/ferm/qprop/dwf_qpropt_w.h, lib/actions/ferm/qprop/eoprec_dwf_qprop_array_altivec_w.cc, lib/actions/ferm/qprop/eoprec_dwf_qprop_array_altivec_w.h, lib/actions/ferm/qprop/eoprec_dwf_qprop_array_cg_dwf_w.cc, lib/actions/ferm/qprop/eoprec_dwf_qprop_array_cg_dwf_w.h, lib/actions/ferm/qprop/eoprec_dwf_qprop_array_sse_w.cc, lib/actions/ferm/qprop/eoprec_dwf_qprop_array_sse_w.h, lib/actions/ferm/qprop/eoprec_fermact_qprop.cc, lib/actions/ferm/qprop/eoprec_fermact_qprop_array.cc, lib/actions/ferm/qprop/eoprec_fermact_qprop_array.h, lib/actions/ferm/qprop/eoprec_staggered_qprop.h, lib/actions/ferm/qprop/nef_quarkprop4_w.h, lib/actions/ferm/qprop/prec_dwf_qprop_array_altivec_w.cc, lib/actions/ferm/qprop/prec_dwf_qprop_array_altivec_w.h, lib/actions/ferm/qprop/prec_dwf_qprop_array_cg_dwf_w.cc, lib/actions/ferm/qprop/prec_dwf_qprop_array_cg_dwf_w.h, lib/actions/ferm/qprop/prec_dwf_qprop_array_sse_w.cc, lib/actions/ferm/qprop/prec_dwf_qprop_array_sse_w.h, lib/actions/ferm/qprop/prec_fermact_qprop.cc, lib/actions/ferm/qprop/prec_fermact_qprop_array.cc, lib/actions/ferm/qprop/prec_fermact_qprop_array.h, lib/actions/ferm/qprop/prec_staggered_qprop.h, lib/actions/ferm/qprop/qprop_w.h, lib/actions/ferm/qprop/quarkprop4_s.h, lib/actions/ferm/qprop/quarkprop4_w.cc, lib/update/molecdyn/monomial/abs_monomial.h, lib/update/molecdyn/monomial/eoprec_constdet_one_flavor_rat_monomial5d_w.cc, lib/update/molecdyn/monomial/eoprec_constdet_one_flavor_rat_monomial5d_w.h, lib/update/molecdyn/monomial/eoprec_constdet_one_flavor_rat_monomial_w.cc, lib/update/molecdyn/monomial/eoprec_constdet_one_flavor_rat_monomial_w.h, lib/update/molecdyn/monomial/eoprec_constdet_two_flavor_hasenbusch_monomial5d_w.cc, lib/update/molecdyn/monomial/eoprec_constdet_two_flavor_hasenbusch_monomial5d_w.h, lib/update/molecdyn/monomial/eoprec_constdet_two_flavor_hasenbusch_monomial_w.cc, lib/update/molecdyn/monomial/eoprec_constdet_two_flavor_hasenbusch_monomial_w.h, lib/update/molecdyn/monomial/eoprec_constdet_two_flavor_monomial5d_w.cc, lib/update/molecdyn/monomial/eoprec_constdet_two_flavor_monomial5d_w.h, lib/update/molecdyn/monomial/eoprec_constdet_two_flavor_monomial_w.cc, lib/update/molecdyn/monomial/eoprec_constdet_two_flavor_monomial_w.h, lib/update/molecdyn/monomial/eoprec_constdet_two_flavor_polynomial_monomial_w.cc, lib/update/molecdyn/monomial/eoprec_constdet_two_flavor_polynomial_monomial_w.h, lib/update/molecdyn/monomial/eoprec_constdet_two_flavor_polyprec_monomial_w.cc, lib/update/molecdyn/monomial/eoprec_constdet_two_flavor_polyprec_monomial_w.h, lib/update/molecdyn/monomial/eoprec_logdet_ee_monomial_w.cc, lib/update/molecdyn/monomial/eoprec_logdet_ee_monomial_w.h, lib/update/molecdyn/monomial/eoprec_logdet_two_flavor_monomial_w.cc, lib/update/molecdyn/monomial/eoprec_logdet_two_flavor_monomial_w.h, lib/update/molecdyn/monomial/monomial_w.h, lib/update/molecdyn/monomial/one_flavor_rat_monomial5d_w.h, lib/update/molecdyn/monomial/one_flavor_rat_monomial_w.h, lib/update/molecdyn/monomial/prec_constdet_one_flavor_rat_monomial5d_w.cc, lib/update/molecdyn/monomial/prec_constdet_one_flavor_rat_monomial5d_w.h, lib/update/molecdyn/monomial/prec_constdet_one_flavor_rat_monomial_w.cc, lib/update/molecdyn/monomial/prec_constdet_one_flavor_rat_monomial_w.h, lib/update/molecdyn/monomial/prec_constdet_two_flavor_hasenbusch_monomial5d_w.cc, lib/update/molecdyn/monomial/prec_constdet_two_flavor_hasenbusch_monomial5d_w.h, lib/update/molecdyn/monomial/prec_constdet_two_flavor_hasenbusch_monomial_w.cc, lib/update/molecdyn/monomial/prec_constdet_two_flavor_hasenbusch_monomial_w.h, lib/update/molecdyn/monomial/prec_constdet_two_flavor_monomial5d_w.cc, lib/update/molecdyn/monomial/prec_constdet_two_flavor_monomial5d_w.h, lib/update/molecdyn/monomial/prec_constdet_two_flavor_monomial_w.cc, lib/update/molecdyn/monomial/prec_constdet_two_flavor_monomial_w.h, lib/update/molecdyn/monomial/prec_constdet_two_flavor_polynomial_monomial_w.cc, lib/update/molecdyn/monomial/prec_constdet_two_flavor_polynomial_monomial_w.h, lib/update/molecdyn/monomial/prec_constdet_two_flavor_polyprec_monomial_w.cc, lib/update/molecdyn/monomial/prec_constdet_two_flavor_polyprec_monomial_w.h, lib/update/molecdyn/monomial/prec_logdet_ee_monomial_w.cc, lib/update/molecdyn/monomial/prec_logdet_ee_monomial_w.h, lib/update/molecdyn/monomial/prec_logdet_two_flavor_monomial_w.cc, lib/update/molecdyn/monomial/prec_logdet_two_flavor_monomial_w.h, lib/update/molecdyn/monomial/two_flavor_hasenbusch_monomial5d_w.h, lib/update/molecdyn/monomial/two_flavor_hasenbusch_monomial_w.h, lib/update/molecdyn/monomial/two_flavor_monomial5d_w.h, lib/update/molecdyn/monomial/two_flavor_monomial_w.h, lib/update/molecdyn/monomial/two_flavor_polynomial_monomial_w.h, lib/update/molecdyn/monomial/two_flavor_polyprec_monomial_w.h: Split apart the fermact.h file into lots of separate bits to make it easier to manage. Split up the linearop.h file more as well. Split up and rearranged the tprec_linop.h files for the anticipated new time-preconditioning. Added some new functionality here. For neatness sake, moved and renamed all the "prec_*" files (which are specific to 4d even-odd preconditioning) to "eoprec_*" filenames. 2006-10-19 11:07 tag chroma3-18-0 2006-10-19 11:07 edwards * aclocal.m4, configure: Induced changes 2006-10-19 11:07 edwards * configure.ac: Changed to 3.18.0 2006-10-18 23:09 edwards * configure: Induced changes 2006-10-18 23:06 edwards * aclocal.m4: Induced changes 2006-10-17 16:06 kostas * tests/chroma/hadron/static_light/: static_light_pot.dat.xml, static_light_pot.out.xml: new output 2006-10-17 16:03 kostas * tests/chroma/hadron/static_light/static_light_pot.ini.xml: modified the input 2006-10-17 15:46 kostas * lib/meas/inline/hadron/inline_static_light_spec_w.cc: fixed xml tag 2006-10-17 14:25 kostas * tests/chroma/hadron/static_light/: static_light_pot.dat.xml, static_light_pot.ini.xml, static_light_pot.out.xml: static meson potential 2006-10-17 14:08 kostas * tests/chroma/hadron/static_light/: static_light.dat.xml, static_light.ini.xml, static_light.out.xml: Test input for static light VS: ---------------------------------------------------------------------- 2006-10-17 12:19 kostas * lib/meas/inline/hadron/inline_hadron_aggregate.cc: registered static light 2006-10-17 11:53 kostas * lib/meas/inline/hadron/inline_static_light_spec_w.cc: fixed typo 2006-10-17 11:43 kostas * lib/meas/inline/hadron/: inline_static_light_spec_w.cc, inline_static_light_spec_w.h: added static light inline 2006-10-17 11:38 kostas * lib/: Makefile.am, meas/inline/hadron/inline_hadron_aggregate.cc: ... 2006-10-17 11:34 kostas * lib/: Makefile.am, meas/inline/hadron/inline_hadron_aggregate.cc: added static light inline measurement 2006-10-17 11:29 kostas * aclocal.m4: fixed makefiles again.. 2006-10-17 11:25 kostas * lib/Makefile.am: fixed makefile 2006-10-17 11:20 kostas * lib/: Makefile.am, meas/hadron/hadron_w.h: Added meson potential into Makefiles and headers 2006-10-17 10:05 kostas * lib/meas/hadron/barQll_w.cc: fixe typo 2006-10-17 10:04 kostas * other_libs/cg-dwf/: aclocal.m4, configure, configure.ac: fixed autoconf bug for Mac OS X 2006-10-17 09:23 kostas * lib/meas/hadron/: barQll_w.cc, barQll_w.h: modified barQll to do full su(3) multiplet 2006-10-15 23:47 kostas * lib/meas/hadron/: mesQlPOT_w.cc, mesQlPOT_w.h: Added heavy-light potential... needs work to be added into the Qll spectrum 2006-10-15 12:18 edwards * install_scripts/jlab/config_chroma_scalar.sh: Updated scripts 2006-10-15 02:16 tag chroma3-17-0 2006-10-15 02:16 edwards * lib/actions/ferm/qprop/prec_dwf_qprop_array_cg_dwf_w.h: Turned off restarts - doing something funny. 2006-10-15 02:00 edwards * NEWS: Info on 3.17.0 2006-10-15 01:59 edwards * tests/chroma/hadron/propagator/: prec_dwf.ini.xml, prec_dwf.out.xml: Updated. 2006-10-15 01:47 edwards * tests/chroma/hadron/propagator/prec_dwf.ini.xml: Changed numRestarts=2 2006-10-15 01:46 edwards * tests/chroma/hadron/propagator/prec_dwf.ini.xml: Added a numRestarts flag in the invertParam group. 2006-10-15 00:17 edwards * lib/actions/ferm/: invert/syssolver_cg_params.cc, invert/syssolver_cg_params.h, invert/syssolver_linop_cg.h, invert/syssolver_linop_cg_array.h, invert/syssolver_mdagm_cg.h, invert/syssolver_mdagm_cg_array.h, qprop/prec_dwf_qprop_array_cg_dwf_w.h: Added restarts. 2006-10-14 23:24 edwards * NEWS: Info on 3.17.0 2006-10-14 18:29 edwards * other_libs/cg-dwf/: AUTHORS, COPYING, INSTALL, Makefile.am, Makefile.original, NEWS, README, acinclude.m4, aclocal.m4, algorithm2e.sty, cg-dwf-config-internal.h.in, cg-dwf-config.h, cg-dwf-config.in, configure, configure.ac, dwf-altivecf.c, dwf-altivecf.h, dwf-bluelightd.c, dwf-bluelightd.h, dwf-bluelightf.c, dwf-bluelightf.h, dwf-ssed.c, dwf-ssed.h, dwf-ssef.c, dwf-ssef.h, dwf-tables.h, dwf.c, dwf.nw, dwf.pdf, interface.nw, interface.pdf: Induced changes 2006-10-14 18:25 edwards * other_libs/cg-dwf/configure: Induced changes 2006-10-14 18:23 edwards * other_libs/cg-dwf/Makefile.am: Added include of cg-dwf-config-internal.h 2006-10-14 13:26 kostas * lib/meas/hadron/BuildingBlocks_w.cc: no comment... 2006-10-14 01:07 edwards * tests/chroma/hadron/noisy_building_blocks/: nbb.dat_0.xml, nbb.dat_1.xml, nbb.out.xml: Updated. 2006-10-14 01:06 edwards * tests/chroma/hadron/building_blocks/: bb.ini.xml, bb.out.xml: Updated output. 2006-10-14 01:03 edwards * lib/meas/inline/hadron/inline_noisy_building_blocks_w.cc: Added dummy Tsrc,Tsnk. 2006-10-14 00:54 edwards * lib/meas/inline/hadron/: hadron.h: Removed spectrum. 2006-10-14 00:52 edwards * lib/meas/: hadron/BuildingBlocks_w.cc, hadron/BuildingBlocks_w.h, inline/hadron/inline_building_blocks_w.cc, inline/hadron/inline_building_blocks_w.h, inline/hadron/inline_noisy_building_blocks_w.cc: Added Translate (ShiftFlag) and Tsrc, Tsnk. 2006-10-14 00:19 edwards * lib/meas/inline/hadron/: inline_spectrum_w.cc, inline_spectrum_w.h: Put in obsolete messages. 2006-10-14 00:11 edwards * tests/regres.pl: Removed spectrum. 2006-10-14 00:11 edwards * tests/chroma/: hadron/mesonspec/mesonspec.out.xml, hadron/mres/mres.out.xml, hadron/stoch_baryon/stoch_baryon.out.xml, hadron/stoch_meson/stoch_meson.out.xml, hadron_s/spectrum_s/spectrum_s.out.xml, schrfun/schrfun.out.xml: Updated output. 2006-10-14 00:10 kostas * lib/meas/hadron/BuildingBlocks_w.cc: Works only for t_src=12 and NT=16. Robert please fix the values of these variables... also add in a new flag for shifting and a new version for input params for BB. Thanks KNO. 2006-10-14 00:05 edwards * tests/chroma/hadron/spectrum/: regres.pl, spectrum.ini.xml, spectrum.metric.xml, spectrum.out.xml: Removed spectrum. 2006-10-13 23:59 edwards * lib/Makefile.am: Turned off spectrum. 2006-10-13 23:57 edwards * lib/meas/inline/hadron/inline_hadron_aggregate.cc: Turned off (but not removed) use of Spectrum 2006-10-13 23:56 edwards * lib/meas/inline/hadron/: hadron.h, inline_hadron_aggregate.cc, inline_spectrumOct_w.cc, inline_spectrumOct_w.h: Removed inline_spectrumOct. 2006-10-13 23:51 edwards * tests/regres.pl, lib/Makefile.am: Removed spectrumOct. 2006-10-13 23:50 edwards * tests/chroma/hadron/spectrumOct/: regres.pl, spectrumOct-v11.ini.xml, spectrumOct-v11.metric.xml, spectrumOct-v11.out.xml: Removed. 2006-10-13 23:48 edwards * tests/chroma/hadron/spectrum/spectrum.out.xml: Switched output back to real. 2006-10-13 23:46 edwards * tests/chroma/hadron/seqsource/: seqsource-baryon.out.xml, seqsource-meson.out.xml, seqsource-photon.out.xml: Updated output. 2006-10-13 23:40 edwards * tests/chroma/hadron/: bar3ptfn/bar3ptfn.out.xml, building_blocks/bb.out.xml, hadspec/hadspec.out.xml, noisy_building_blocks/nbb.out.xml, propagator/prec_clover.out.xml, propagator/prec_dwf.out.xml, propagator/prec_ht_contfrac5d.out.xml, propagator/prec_ovext.out.xml, propagator/prec_ovlap_contfrac5d.out.xml, propagator/prec_parwilson.out.xml, propagator/prec_wilson-smearing.out.xml, propagator/prec_wilson-twisted.out.xml, propagator/prec_wilson.ferm.metric.xml, propagator/prec_wilson.ferm.out.xml, propagator/prec_wilson.out.xml, propagator/prec_zolo_nef.out.xml, propagator/regres.pl, propagator/unprec-ovlap-zolo4d.out.xml, propagator/unprec-zolo-ev-multi.out.xml, propagator/unprec_clover.out.xml, propagator/unprec_dwftransf.out.xml, propagator/unprec_hamberwu.out.xml, propagator/unprec_ovext.out.xml, propagator/unprec_ovlap_contfrac5d.out.xml, propagator/unprec_zolo_nef.out.xml, sink_smear/sink-deriv.out.xml, sink_smear/sink-displace.out.xml, sink_smear/sink_smearing.out.xml: Updated output. 2006-10-13 23:38 edwards * lib/meas/hadron/mesons_w.cc: Put the old "real" output back in front of this routine. George Fleming had made it complex, I make it write real (again). It is mesons2_w.cc that writes complex. 2006-10-13 22:43 edwards * aclocal.m4, configure: Induced changes 2006-10-13 22:42 edwards * lib/io/qprop_io.cc: Changed ChromaProp output format back to version 9. 2006-10-13 22:41 edwards * configure.ac: Changed to 3.17.0 2006-10-13 11:16 juge * lib/meas/hadron/group_baryon_operator_w.h: The header file that goes with the new group_baryon_operator_w.cc 2006-10-13 11:15 juge * lib/meas/hadron/group_baryon_operator_w.cc: Three quark propagators have been manipulated before being translated to all-to-all (which should be correct and have less noise?). The correlation function is now comprised of a single term despite the need for two different quark diagrams (?). This version did compile ... 2006-10-11 11:42 edwards * lib/: fermact.h, actions/ferm/fermacts/prec_dwf_fermact_array_w.cc, actions/ferm/fermacts/prec_dwf_fermact_array_w.h, actions/ferm/fermacts/prec_kno_fermact_array_w.cc, actions/ferm/fermacts/prec_kno_fermact_array_w.h, actions/ferm/fermacts/prec_nef_fermact_array_w.cc, actions/ferm/fermacts/prec_nef_fermact_array_w.h, actions/ferm/fermacts/prec_zolo_nef_fermact_array_w.cc, actions/ferm/fermacts/prec_zolo_nef_fermact_array_w.h, actions/ferm/fermacts/unprec_dwf_fermact_array_w.cc, actions/ferm/fermacts/unprec_dwf_fermact_array_w.h, actions/ferm/fermacts/unprec_nef_fermact_array_w.cc, actions/ferm/fermacts/unprec_nef_fermact_array_w.h, actions/ferm/fermacts/unprec_zolo_nef_fermact_array_w.cc, actions/ferm/fermacts/unprec_zolo_nef_fermact_array_w.h, actions/ferm/qprop/dwf_quarkprop4_w.cc, actions/ferm/qprop/dwf_quarkprop4_w.h, actions/ferm/qprop/nef_quarkprop4_w.cc, actions/ferm/qprop/nef_quarkprop4_w.h, actions/ferm/qprop/quarkprop4_s.cc, actions/ferm/qprop/quarkprop4_s.h, actions/ferm/qprop/quarkprop4_w.cc, actions/ferm/qprop/quarkprop4_w.h, io/qprop_io.cc, io/qprop_io.h, meas/inline/hadron/inline_propagator_w.cc: Removed use of numRetries !! This was a misguided attempt to get restarts into the code. Will try another way via the system solvers and the InvertParam xml group. 2006-10-11 10:06 edwards * lib/meas/inline/hadron/: inline_noisy_building_blocks_w.cc, inline_noisy_building_blocks_w.h: Updated to match inline_building_blocks. 2006-10-11 09:55 edwards * lib/meas/hadron/BuildingBlocks_w.cc: Fixed ";" typo. 2006-10-11 09:44 edwards * lib/meas/inline/hadron/inline_building_blocks_w.cc, lib/meas/inline/hadron/inline_building_blocks_w.h, tests/chroma/hadron/building_blocks/bb.ini.xml: Added a time_reverse flag. 2006-10-11 09:44 edwards * lib/meas/hadron/: BuildingBlocks_w.cc, BuildingBlocks_w.h: Added a TimeReverse flag for time reversal of the building blocks. Not implemented yet, though. 2006-10-11 09:31 tag chroma3-16-1 2006-10-11 09:31 edwards * NEWS: Info on 3.16.1. 2006-10-11 09:30 edwards * aclocal.m4, configure: Induced changes 2006-10-11 09:30 edwards * configure.ac: Changed to 3.16.1 2006-10-11 09:27 edwards * lib/meas/hadron/hadron_seqsource.cc: Added missing template<> 2006-10-10 23:45 tag chroma3-16-0 2006-10-10 23:45 edwards * NEWS: Info on 3.16.0 2006-10-10 17:01 edwards * lib/meas/hadron/: barseqsrc_w.cc, barseqsrc_w.h, hadron_seqsource.cc, hadron_seqsource.h: Added in get of fermion BC - needed by timeOrder. Rearranged timeOrder's location. Now correct for source spatial phase in seq-sink construction. Should hopefully and correctly fix timeOrder. 2006-10-10 14:32 edwards * lib/meas/hadron/: hadron_seqsource.cc, hadron_seqsource.h: Made timeOrder inlined. 2006-10-10 14:27 edwards * lib/meas/hadron/: barseqsrc_w.cc, barseqsrc_w.h, hadron_seqsource.cc, hadron_seqsource.h: Introduced a time-ordering phase. By default it is a function returning one. For baryon-baryon seqsources, it checks the time-slice ordering. 2006-10-10 13:52 edwards * lib/meas/: hadron/barseqsrc_w.cc, hadron/barseqsrc_w.h, hadron/derivmesonseqsrc_w.cc, hadron/derivmesonseqsrc_w.h, hadron/hadron_seqsource.cc, hadron/hadron_seqsource.h, hadron/mesonseqsrc_w.cc, hadron/mesonseqsrc_w.h, hadron/photon_seqsrc_w.cc, hadron/photon_seqsrc_w.h, inline/hadron/inline_seqsource_w.cc: Changed all seqsources so that the full ForwardProp_t struct from the forward props is passed down. 2006-10-10 13:50 edwards * lib/io/: qprop_io.cc, qprop_io.h: MAde getTSrce() be of type const 2006-10-10 13:48 edwards * aclocal.m4, configure: Induced changes 2006-10-10 13:48 edwards * configure.ac: Changed to 3.16.0 2006-10-10 13:13 tag chroma3-15-1 2006-10-10 13:13 edwards * aclocal.m4, configure: Induced changes 2006-10-10 13:12 edwards * NEWS: Info on 3.15.1 2006-10-10 13:11 edwards * configure.ac: Changed to 3.15.1 2006-09-27 14:21 bjoo * tests/chroma/glue/gaugestate/gaugestate.metric.xml: Fixed an oops in this 2006-09-26 09:47 edwards * tests/chroma/glue/gaugestate/regres.pl: Fixed to point to gauge state tests and not fermstate! 2006-09-24 16:58 edwards * lib/actions/gauge/gaugeacts/: plaq_plus_spatial_two_plaq_gaugeact.cc, rect_gaugeact.cc: Rearranged some adj(a*b) expressions to match cliches. 2006-09-21 16:38 bjoo * lib/actions/ferm/qprop/dwf_qpropt_w.h: Oops 2006-09-21 16:20 tag chroma3-15-0 2006-09-21 16:20 edwards * NEWS: Info on 3.15.0 2006-09-21 16:18 edwards * tests/: regres.pl, chroma/glue/gaugestate/gaugestate.ini.xml, chroma/glue/gaugestate/gaugestate.metric.xml, chroma/glue/gaugestate/gaugestate.out.xml, chroma/glue/gaugestate/regres.pl, chroma/hadron/fermstate/fermstate.ini.xml, chroma/hadron/fermstate/fermstate.metric.xml, chroma/hadron/fermstate/fermstate.out.xml, chroma/hadron/fermstate/regres.pl: New gauge and fermion state tests. 2006-09-21 15:45 edwards * tests/: chroma/eig/eigbnds-v1.ini.xml, chroma/eig/eigbnds-v1.out.xml, chroma/eig/eigbnds.ini.xml, chroma/eig/eigbnds.metric.xml, chroma/eig/eigbnds.out.xml, chroma/eig/regres.pl, chroma/gfix/coulgauge/coulgauge.ini.xml, chroma/gfix/coulgauge/coulgauge.metric.xml, chroma/gfix/coulgauge/coulgauge.out.xml, chroma/glue/fuzwilp/fuzwilp.ini.xml, chroma/glue/fuzwilp/fuzwilp.metric.xml, chroma/glue/fuzwilp/fuzwilp.out.xml, chroma/glue/wilslp/wilslp.ini.xml, chroma/glue/wilslp/wilslp.metric.xml, chroma/glue/wilslp/wilslp.out.xml, chroma/hadron/propagator/prec_wilson-twisted.ini.xml, chroma/hadron/propagator/prec_wilson-twisted.metric.xml, chroma/hadron/propagator/prec_wilson-twisted.out.xml, chroma/hadron_s/spectrum_s/spectrum_s.ini.xml, chroma/hadron_s/spectrum_s/spectrum_s.metric.xml, chroma/hadron_s/spectrum_s/spectrum_s.out.xml, hmc/hmc.prec_wilson.ini.xml, hmc/hmc.prec_wilson.out.xml, purgaug/purgaug.ini.xml, purgaug/purgaug.out.xml, purgaug/purgaug.sfnonpt.ini.xml, purgaug/purgaug.sfnonpt.out.xml: Updated. 2006-09-21 15:42 edwards * lib/: actions/ferm/fermstates/ferm_createstate_aggregate_w.cc, actions/gauge/gaugestates/gauge_createstate_aggregate.cc, meas/inline/glue/inline_wilslp.cc, meas/inline/hadron/inline_building_blocks_w.cc: Fixes. 2006-09-21 15:41 edwards * tests/chroma/hadron/building_blocks/: bb.dat.xml, bb.ini.xml, bb.out.xml: Switched to new version with a FermState. 2006-09-21 14:43 edwards * tests/: chroma/glue/wilslp/wilslp.ini.xml, chroma/glue/wilslp/wilslp.out.xml, purgaug/purgaug.ini.xml, purgaug/purgaug.sfnonpt.ini.xml: New versions of input. 2006-09-21 14:43 edwards * lib/: actions/gauge/gaugebcs/gaugebc_aggregate.cc, actions/gauge/gaugebcs/schr_sf_zero_gaugebc.cc, actions/gauge/gaugebcs/schr_sf_zero_gaugebc.h, meas/inline/glue/inline_apply_gaugestate.cc, meas/inline/glue/inline_apply_gaugestate.h, meas/inline/glue/inline_glue_aggregate.cc, meas/inline/glue/inline_plaquette.cc, meas/inline/glue/inline_plaquette.h, meas/inline/glue/inline_polylp.cc, meas/inline/glue/inline_polylp.h, meas/inline/glue/inline_wilslp.cc, meas/inline/glue/inline_wilslp.h, meas/inline/hadron/inline_apply_fermstate_w.cc, meas/inline/hadron/inline_apply_fermstate_w.h, meas/inline/hadron/inline_building_blocks_w.cc, meas/inline/hadron/inline_building_blocks_w.h, meas/inline/hadron/inline_hadron_aggregate.cc, meas/inline/hadron/inline_propagator_w.cc, meas/inline/hadron/inline_propagator_w.h: Started adding GaugeState and FermState instances in inline measurements. Also have inline_task variants that apply the gauge and ferm states to a gauge field. 2006-09-21 14:41 edwards * aclocal.m4, configure: Induced changes 2006-09-21 14:40 edwards * lib/Makefile.am: Added inline_apply_{ferm,gauge}state and schr_sf_zero_gaugebc 2006-09-21 14:40 edwards * configure.ac: Changed to 3.15.0 2006-09-21 14:36 tag chroma3-14-7 2006-09-21 14:36 edwards * NEWS: Info on 3.14.7 2006-09-21 14:34 edwards * aclocal.m4, configure: Induced changes 2006-09-21 14:33 edwards * configure.ac: Changed to 3.14.7 2006-09-21 14:33 edwards * lib/meas/inline/glue/inline_wilslp.cc: Added registration of create_states. 2006-09-21 10:21 tag chroma3-14-6 2006-09-21 10:21 edwards * NEWS: Info on 3.14.6 2006-09-21 10:19 edwards * aclocal.m4, configure: Induced changes 2006-09-21 10:18 edwards * configure.ac: Changed to 3.14.6 2006-09-20 16:31 edwards * lib/actions/ferm/fermstates/: extfield_aggregate_w.cc, extfield_aggregate_w.h, extfield_fermstate_w.cc, ferm_createstate_aggregate_s.cc, ferm_createstate_aggregate_s.h, ferm_createstate_aggregate_w.cc, ferm_createstate_aggregate_w.h, periodic_fermstate_s.cc, periodic_fermstate_s.h, periodic_fermstate_w.cc, periodic_fermstate_w.h, simple_fermstate_s.cc, simple_fermstate_s.h, simple_fermstate_w.cc, simple_fermstate_w.h, stout_fermstate_w.cc, stout_fermstate_w.h: Major housecleaning. Changed all the uses of the registration method to now be **runtime**. The "registerAll()" function is exposed that will register the thingy. There is a private "registered" flag that is initially false and then set to true upon registration done at runtime. 2006-09-20 16:27 edwards * lib/actions/ferm/fermacts/fermacts_aggregate_w.cc, lib/actions/ferm/fermacts/fermacts_aggregate_w.h, lib/actions/ferm/fermacts/ovext_const_div_by_resp_strategy.cc, lib/actions/ferm/fermacts/ovext_const_div_by_resp_strategy.h, lib/actions/ferm/fermacts/ovext_constant_strategy.cc, lib/actions/ferm/fermacts/ovext_constant_strategy.h, lib/actions/ferm/fermacts/ovext_neuberger_strategy.cc, lib/actions/ferm/fermacts/ovext_neuberger_strategy.h, lib/actions/ferm/fermacts/ovext_tuning_strategy_aggregate.cc, lib/actions/ferm/fermacts/ovext_tuning_strategy_aggregate.h, lib/actions/ferm/fermacts/ovlap_partfrac4d_fermact_w.cc, lib/actions/ferm/fermacts/ovlap_partfrac4d_fermact_w.h, lib/actions/ferm/fermacts/poly_cheb_fermact_w.cc, lib/actions/ferm/fermacts/poly_cheb_fermact_w.h, lib/actions/ferm/fermacts/prec_clover_extfield_fermact_w.cc, lib/actions/ferm/fermacts/prec_clover_extfield_fermact_w.h, lib/actions/ferm/fermacts/prec_clover_fermact_w.cc, lib/actions/ferm/fermacts/prec_clover_fermact_w.h, lib/actions/ferm/fermacts/prec_dwf_fermact_array_w.cc, lib/actions/ferm/fermacts/prec_dwf_fermact_array_w.h, lib/actions/ferm/fermacts/prec_ht_contfrac5d_fermact_array_w.cc, lib/actions/ferm/fermacts/prec_ht_contfrac5d_fermact_array_w.h, lib/actions/ferm/fermacts/prec_kno_fermact_array_w.cc, lib/actions/ferm/fermacts/prec_kno_fermact_array_w.h, lib/actions/ferm/fermacts/prec_nef_fermact_array_w.cc, lib/actions/ferm/fermacts/prec_nef_fermact_array_w.h, lib/actions/ferm/fermacts/prec_ovdwf_fermact_array_w.cc, lib/actions/ferm/fermacts/prec_ovdwf_fermact_array_w.h, lib/actions/ferm/fermacts/prec_ovext_fermact_array_w.cc, lib/actions/ferm/fermacts/prec_ovext_fermact_array_w.h, lib/actions/ferm/fermacts/prec_ovlap_contfrac5d_fermact_array_w.cc, lib/actions/ferm/fermacts/prec_ovlap_contfrac5d_fermact_array_w.h, lib/actions/ferm/fermacts/prec_parwilson_fermact_w.cc, lib/actions/ferm/fermacts/prec_parwilson_fermact_w.h, lib/actions/ferm/fermacts/prec_slic_fermact_w.cc, lib/actions/ferm/fermacts/prec_slic_fermact_w.h, lib/actions/ferm/fermacts/prec_wilson_fermact_w.cc, lib/actions/ferm/fermacts/prec_wilson_fermact_w.h, lib/actions/ferm/fermacts/prec_zolo_nef_fermact_array_w.cc, lib/actions/ferm/fermacts/prec_zolo_nef_fermact_array_w.h, lib/actions/ferm/fermacts/unprec_clover_fermact_w.cc, lib/actions/ferm/fermacts/unprec_clover_fermact_w.h, lib/actions/ferm/fermacts/unprec_dwf_fermact_array_w.cc, lib/actions/ferm/fermacts/unprec_dwf_fermact_array_w.h, lib/actions/ferm/fermacts/unprec_dwftransf_fermact_w.cc, lib/actions/ferm/fermacts/unprec_dwftransf_fermact_w.h, lib/actions/ferm/fermacts/unprec_hamberwu_fermact_w.cc, lib/actions/ferm/fermacts/unprec_hamberwu_fermact_w.h, lib/actions/ferm/fermacts/unprec_ht_contfrac5d_fermact_array_w.cc, lib/actions/ferm/fermacts/unprec_ht_contfrac5d_fermact_array_w.h, lib/actions/ferm/fermacts/unprec_nef_fermact_array_w.cc, lib/actions/ferm/fermacts/unprec_nef_fermact_array_w.h, lib/actions/ferm/fermacts/unprec_ovdwf_fermact_array_w.cc, lib/actions/ferm/fermacts/unprec_ovdwf_fermact_array_w.h, lib/actions/ferm/fermacts/unprec_ovext_fermact_array_w.cc, lib/actions/ferm/fermacts/unprec_ovext_fermact_array_w.h, lib/actions/ferm/fermacts/unprec_ovlap_contfrac5d_fermact_array_w.cc, lib/actions/ferm/fermacts/unprec_ovlap_contfrac5d_fermact_array_w.h, lib/actions/ferm/fermacts/unprec_parwilson_fermact_w.cc, lib/actions/ferm/fermacts/unprec_parwilson_fermact_w.h, lib/actions/ferm/fermacts/unprec_w12_fermact_w.cc, lib/actions/ferm/fermacts/unprec_w12_fermact_w.h, lib/actions/ferm/fermacts/unprec_wilson_fermact_w.cc, lib/actions/ferm/fermacts/unprec_wilson_fermact_w.h, lib/actions/ferm/fermacts/unprec_zolo_nef_fermact_array_w.cc, lib/actions/ferm/fermacts/unprec_zolo_nef_fermact_array_w.h, lib/actions/ferm/fermbcs/fermbcs_aggregate_s.cc, lib/actions/ferm/fermbcs/fermbcs_aggregate_s.h, lib/actions/ferm/fermbcs/fermbcs_aggregate_w.cc, lib/actions/ferm/fermbcs/fermbcs_aggregate_w.h, lib/actions/ferm/fermbcs/periodic_fermbc_w.cc, lib/actions/ferm/fermbcs/periodic_fermbc_w.h, lib/actions/ferm/fermbcs/schr_chromomag_fermbc_w.cc, lib/actions/ferm/fermbcs/schr_chromomag_fermbc_w.h, lib/actions/ferm/fermbcs/schr_coupling_fermbc_w.cc, lib/actions/ferm/fermbcs/schr_coupling_fermbc_w.h, lib/actions/ferm/fermbcs/schr_dirich_fermbc_w.cc, lib/actions/ferm/fermbcs/schr_dirich_fermbc_w.h, lib/actions/ferm/fermbcs/schr_nonpert_fermbc_w.cc, lib/actions/ferm/fermbcs/schr_nonpert_fermbc_w.h, lib/actions/ferm/fermbcs/schr_triv_fermbc_w.cc, lib/actions/ferm/fermbcs/schr_triv_fermbc_w.h, lib/actions/ferm/fermbcs/simple_fermbc_s.cc, lib/actions/ferm/fermbcs/simple_fermbc_s.h, lib/actions/ferm/fermbcs/simple_fermbc_w.cc, lib/actions/ferm/fermbcs/simple_fermbc_w.h, lib/actions/ferm/fermbcs/twisted_fermbc_w.cc, lib/actions/ferm/fermbcs/twisted_fermbc_w.h, lib/actions/ferm/invert/multi_syssolver_mdagm_aggregate.cc, lib/actions/ferm/invert/multi_syssolver_mdagm_aggregate.h, lib/actions/ferm/invert/multi_syssolver_mdagm_cg.cc, lib/actions/ferm/invert/multi_syssolver_mdagm_cg.h, lib/actions/ferm/invert/multi_syssolver_mdagm_cg_array.cc, lib/actions/ferm/invert/multi_syssolver_mdagm_cg_array.h, lib/actions/ferm/invert/syssolver_linop_aggregate.cc, lib/actions/ferm/invert/syssolver_linop_aggregate.h, lib/actions/ferm/invert/syssolver_linop_cg.cc, lib/actions/ferm/invert/syssolver_linop_cg.h, lib/actions/ferm/invert/syssolver_linop_cg_array.cc, lib/actions/ferm/invert/syssolver_linop_cg_array.h, lib/actions/ferm/invert/syssolver_mdagm_aggregate.cc, lib/actions/ferm/invert/syssolver_mdagm_aggregate.h, lib/actions/ferm/invert/syssolver_mdagm_cg.cc, lib/actions/ferm/invert/syssolver_mdagm_cg.h, lib/actions/ferm/invert/syssolver_mdagm_cg_array.cc, lib/actions/ferm/invert/syssolver_mdagm_cg_array.h, lib/actions/ferm/invert/syssolver_polyprec_aggregate.cc, lib/actions/ferm/invert/syssolver_polyprec_aggregate.h, lib/actions/ferm/invert/syssolver_polyprec_cg.cc, lib/actions/ferm/invert/syssolver_polyprec_cg.h, lib/actions/gauge/gaugeacts/aniso_spectrum_gaugeact.cc, lib/actions/gauge/gaugeacts/aniso_spectrum_gaugeact.h, lib/actions/gauge/gaugeacts/gaugeacts_aggregate.cc, lib/actions/gauge/gaugeacts/gaugeacts_aggregate.h, lib/actions/gauge/gaugeacts/lw_1loop_gaugeact.cc, lib/actions/gauge/gaugeacts/lw_1loop_gaugeact.h, lib/actions/gauge/gaugeacts/lw_tree_gaugeact.cc, lib/actions/gauge/gaugeacts/lw_tree_gaugeact.h, lib/actions/gauge/gaugeacts/pg_gaugeact.cc, lib/actions/gauge/gaugeacts/pg_gaugeact.h, lib/actions/gauge/gaugeacts/plaq_gaugeact.cc, lib/actions/gauge/gaugeacts/plaq_gaugeact.h, lib/actions/gauge/gaugeacts/plaq_plus_spatial_two_plaq_gaugeact.cc, lib/actions/gauge/gaugeacts/plaq_plus_spatial_two_plaq_gaugeact.h, lib/actions/gauge/gaugeacts/rbc_gaugeact.cc, lib/actions/gauge/gaugeacts/rbc_gaugeact.h, lib/actions/gauge/gaugeacts/rect_gaugeact.cc, lib/actions/gauge/gaugeacts/rect_gaugeact.h, lib/actions/gauge/gaugeacts/rg_gaugeact.cc, lib/actions/gauge/gaugeacts/rg_gaugeact.h, lib/actions/gauge/gaugeacts/spatial_two_plaq_gaugeact.cc, lib/actions/gauge/gaugeacts/spatial_two_plaq_gaugeact.h, lib/actions/gauge/gaugeacts/wilson_gaugeact.cc, lib/actions/gauge/gaugeacts/wilson_gaugeact.h, lib/actions/gauge/gaugebcs/gaugebc_aggregate.cc, lib/actions/gauge/gaugebcs/gaugebc_aggregate.h, lib/actions/gauge/gaugebcs/periodic_gaugebc.cc, lib/actions/gauge/gaugebcs/periodic_gaugebc.h, lib/actions/gauge/gaugebcs/schr_chromomag_gaugebc.cc, lib/actions/gauge/gaugebcs/schr_chromomag_gaugebc.h, lib/actions/gauge/gaugebcs/schr_coupling_gaugebc.cc, lib/actions/gauge/gaugebcs/schr_coupling_gaugebc.h, lib/actions/gauge/gaugebcs/schr_dirich_gaugebc.cc, lib/actions/gauge/gaugebcs/schr_dirich_gaugebc.h, lib/actions/gauge/gaugebcs/schr_nonpert_gaugebc.cc, lib/actions/gauge/gaugebcs/schr_nonpert_gaugebc.h, lib/actions/gauge/gaugebcs/schr_triv_gaugebc.cc, lib/actions/gauge/gaugebcs/schr_triv_gaugebc.h, lib/actions/gauge/gaugebcs/simple_gaugebc.cc, lib/actions/gauge/gaugebcs/simple_gaugebc.h, lib/actions/gauge/gaugestates/gauge_createstate_aggregate.cc, lib/actions/gauge/gaugestates/gauge_createstate_aggregate.h, lib/actions/gauge/gaugestates/periodic_gaugestate.cc, lib/actions/gauge/gaugestates/periodic_gaugestate.h, lib/actions/gauge/gaugestates/simple_gaugestate.cc, lib/actions/gauge/gaugestates/simple_gaugestate.h, lib/actions/gauge/gaugestates/stout_gaugestate.cc, lib/actions/gauge/gaugestates/stout_gaugestate.h, lib/meas/hadron/barseqsrc_w.cc, lib/meas/hadron/barseqsrc_w.h, lib/meas/hadron/baryon_operator_aggregate_w.cc, lib/meas/hadron/baryon_operator_aggregate_w.h, lib/meas/hadron/derivmesonseqsrc_w.cc, lib/meas/hadron/derivmesonseqsrc_w.h, lib/meas/hadron/group_baryon_operator_w.cc, lib/meas/hadron/group_baryon_operator_w.h, lib/meas/hadron/mesonseqsrc_w.cc, lib/meas/hadron/mesonseqsrc_w.h, lib/meas/hadron/no_spin_insertion.cc, lib/meas/hadron/no_spin_insertion.h, lib/meas/hadron/photon_seqsrc_w.cc, lib/meas/hadron/photon_seqsrc_w.h, lib/meas/hadron/seqsource_aggregate_w.cc, lib/meas/hadron/seqsource_aggregate_w.h, lib/meas/hadron/simple_baryon_operator_w.cc, lib/meas/hadron/simple_baryon_operator_w.h, lib/meas/hadron/simple_spin_insertion_w.cc, lib/meas/hadron/simple_spin_insertion_w.h, lib/meas/hadron/spin_insertion_aggregate.cc, lib/meas/hadron/spin_insertion_aggregate.h, lib/meas/inline/inline_aggregate.cc, lib/meas/inline/inline_aggregate.h, lib/meas/inline/eig/inline_eig_aggregate.cc, lib/meas/inline/eig/inline_eig_aggregate.h, lib/meas/inline/eig/inline_eigbnds.cc, lib/meas/inline/eig/inline_eigbnds.h, lib/meas/inline/eig/inline_ritz_H_w.cc, lib/meas/inline/eig/inline_ritz_H_w.h, lib/meas/inline/gfix/inline_coulgauge.cc, lib/meas/inline/gfix/inline_coulgauge.h, lib/meas/inline/gfix/inline_gfix_aggregate.cc, lib/meas/inline/gfix/inline_gfix_aggregate.h, lib/meas/inline/glue/inline_fuzwilp.cc, lib/meas/inline/glue/inline_fuzwilp.h, lib/meas/inline/glue/inline_glue_aggregate.cc, lib/meas/inline/glue/inline_glue_aggregate.h, lib/meas/inline/glue/inline_plaquette.cc, lib/meas/inline/glue/inline_plaquette.h, lib/meas/inline/glue/inline_polylp.cc, lib/meas/inline/glue/inline_polylp.h, lib/meas/inline/glue/inline_wilslp.cc, lib/meas/inline/glue/inline_wilslp.h, lib/meas/inline/hadron/inline_bar3ptfn_w.cc, lib/meas/inline/hadron/inline_bar3ptfn_w.h, lib/meas/inline/hadron/inline_building_blocks_w.cc, lib/meas/inline/hadron/inline_building_blocks_w.h, lib/meas/inline/hadron/inline_hadron_aggregate.cc, lib/meas/inline/hadron/inline_hadron_aggregate.h, lib/meas/inline/hadron/inline_hadspec_w.cc, lib/meas/inline/hadron/inline_hadspec_w.h, lib/meas/inline/hadron/inline_make_source_ferm_w.cc, lib/meas/inline/hadron/inline_make_source_ferm_w.h, lib/meas/inline/hadron/inline_make_source_w.cc, lib/meas/inline/hadron/inline_make_source_w.h, lib/meas/inline/hadron/inline_mesonspec_w.cc, lib/meas/inline/hadron/inline_mesonspec_w.h, lib/meas/inline/hadron/inline_mres_w.cc, lib/meas/inline/hadron/inline_mres_w.h, lib/meas/inline/hadron/inline_multi_propagator_w.cc, lib/meas/inline/hadron/inline_multi_propagator_w.h, lib/meas/inline/hadron/inline_multipole_w.cc, lib/meas/inline/hadron/inline_multipole_w.h, lib/meas/inline/hadron/inline_noisy_building_blocks_w.cc, lib/meas/inline/hadron/inline_noisy_building_blocks_w.h, lib/meas/inline/hadron/inline_polar_source_w.cc, lib/meas/inline/hadron/inline_propagator_ferm_w.cc, lib/meas/inline/hadron/inline_propagator_ferm_w.h, lib/meas/inline/hadron/inline_propagator_w.cc, lib/meas/inline/hadron/inline_propagator_w.h, lib/meas/inline/hadron/inline_qpropadd_w.cc, lib/meas/inline/hadron/inline_qpropadd_w.h, lib/meas/inline/hadron/inline_qpropqio_w.cc, lib/meas/inline/hadron/inline_qpropqio_w.h, lib/meas/inline/hadron/inline_qqbar_w.cc, lib/meas/inline/hadron/inline_qqbar_w.h, lib/meas/inline/hadron/inline_qqqNucNuc_w.cc, lib/meas/inline/hadron/inline_qqqNucNuc_w.h, lib/meas/inline/hadron/inline_qqq_w.cc, lib/meas/inline/hadron/inline_qqq_w.h, lib/meas/inline/hadron/inline_seqsource_w.cc, lib/meas/inline/hadron/inline_seqsource_w.h, lib/meas/inline/hadron/inline_sink_smear_w.cc, lib/meas/inline/hadron/inline_sink_smear_w.h, lib/meas/inline/hadron/inline_spectrumOct_w.cc, lib/meas/inline/hadron/inline_spectrumOct_w.h, lib/meas/inline/hadron/inline_spectrumQll.cc, lib/meas/inline/hadron/inline_spectrumQll.h, lib/meas/inline/hadron/inline_spectrum_w.cc, lib/meas/inline/hadron/inline_spectrum_w.h, lib/meas/inline/hadron/inline_stoch_baryon_w.cc, lib/meas/inline/hadron/inline_stoch_baryon_w.h, lib/meas/inline/hadron/inline_stoch_meson_w.cc, lib/meas/inline/hadron/inline_stoch_meson_w.h, lib/meas/inline/hadron_s/inline_hadron_aggregate_s.cc, lib/meas/inline/hadron_s/inline_hadron_aggregate_s.h, lib/meas/inline/hadron_s/inline_spectrum_s.cc, lib/meas/inline/hadron_s/inline_spectrum_s.h, lib/meas/inline/io/inline_erase_obj.cc, lib/meas/inline/io/inline_erase_obj.h, lib/meas/inline/io/inline_gaussian_obj.cc, lib/meas/inline/io/inline_gaussian_obj.h, lib/meas/inline/io/inline_io_aggregate.cc, lib/meas/inline/io/inline_io_aggregate.h, lib/meas/inline/io/inline_list_obj.cc, lib/meas/inline/io/inline_list_obj.h, lib/meas/inline/io/inline_nersc_read_obj.cc, lib/meas/inline/io/inline_nersc_read_obj.h, lib/meas/inline/io/inline_nersc_write_obj.cc, lib/meas/inline/io/inline_nersc_write_obj.h, lib/meas/inline/io/inline_qio_read_obj.cc, lib/meas/inline/io/inline_qio_read_obj.h, lib/meas/inline/io/inline_qio_write_erase_obj.cc, lib/meas/inline/io/inline_qio_write_erase_obj.h, lib/meas/inline/io/inline_qio_write_obj.cc, lib/meas/inline/io/inline_qio_write_obj.h, lib/meas/inline/io/inline_szin_read_obj.cc, lib/meas/inline/io/inline_szin_read_obj.h, lib/meas/inline/io/inline_szin_write_obj.cc, lib/meas/inline/io/inline_szin_write_obj.h, lib/meas/inline/io/inline_xml_write_obj.cc, lib/meas/inline/io/inline_xml_write_obj.h, lib/meas/inline/io/qio_read_obj_funcmap.cc, lib/meas/inline/io/qio_read_obj_funcmap.h, lib/meas/inline/io/qio_write_obj_funcmap.cc, lib/meas/inline/io/qio_write_obj_funcmap.h, lib/meas/inline/io/szin_read_obj_funcmap.cc, lib/meas/inline/io/szin_read_obj_funcmap.h, lib/meas/inline/io/szin_write_obj_funcmap.cc, lib/meas/inline/io/szin_write_obj_funcmap.h, lib/meas/inline/io/xml_write_obj_funcmap.cc, lib/meas/inline/io/xml_write_obj_funcmap.h, lib/meas/inline/schrfun/inline_schrfun_aggregate.cc, lib/meas/inline/schrfun/inline_schrfun_aggregate.h, lib/meas/inline/schrfun/inline_sfpcac_w.cc, lib/meas/inline/schrfun/inline_sfpcac_w.h, lib/meas/inline/smear/inline_link_smear.cc, lib/meas/inline/smear/inline_link_smear.h, lib/meas/inline/smear/inline_smear_aggregate.cc, lib/meas/inline/smear/inline_smear_aggregate.h, lib/meas/sinks/pt_sink_smearing.cc, lib/meas/sinks/pt_sink_smearing.h, lib/meas/sinks/sh_sink_smearing.cc, lib/meas/sinks/sh_sink_smearing.h, lib/meas/sinks/sink_smearing_aggregate.cc, lib/meas/sinks/sink_smearing_aggregate.h, lib/meas/smear/ape_link_smearing.cc, lib/meas/smear/ape_link_smearing.h, lib/meas/smear/deriv_quark_displacement_w.cc, lib/meas/smear/deriv_quark_displacement_w.h, lib/meas/smear/gamma_displacement_w.cc, lib/meas/smear/gamma_displacement_w.h, lib/meas/smear/gaus_quark_smearing.cc, lib/meas/smear/gaus_quark_smearing.h, lib/meas/smear/hyp_link_smearing.cc, lib/meas/smear/hyp_link_smearing.h, lib/meas/smear/link_smearing_aggregate.cc, lib/meas/smear/link_smearing_aggregate.h, lib/meas/smear/no_link_smearing.cc, lib/meas/smear/no_link_smearing.h, lib/meas/smear/no_quark_displacement.cc, lib/meas/smear/no_quark_displacement.h, lib/meas/smear/no_quark_smearing.cc, lib/meas/smear/no_quark_smearing.h, lib/meas/smear/quark_displacement_aggregate.cc, lib/meas/smear/quark_displacement_aggregate.h, lib/meas/smear/quark_smearing_aggregate.cc, lib/meas/smear/quark_smearing_aggregate.h, lib/meas/smear/simple_quark_displacement.cc, lib/meas/smear/simple_quark_displacement.h, lib/meas/smear/stout_link_smearing.cc, lib/meas/smear/stout_link_smearing.h, lib/meas/sources/dilutezN_source_const.cc, lib/meas/sources/dilutezN_source_const.h, lib/meas/sources/partwall_source_const.cc, lib/meas/sources/partwall_source_const.h, lib/meas/sources/pt_source_const.cc, lib/meas/sources/pt_source_const.h, lib/meas/sources/pt_source_smearing.cc, lib/meas/sources/pt_source_smearing.h, lib/meas/sources/rndz2wall_source_const.cc, lib/meas/sources/rndz2wall_source_const.h, lib/meas/sources/sh_source_const.cc, lib/meas/sources/sh_source_const.h, lib/meas/sources/sh_source_smearing.cc, lib/meas/sources/sh_source_smearing.h, lib/meas/sources/source_const_aggregate.cc, lib/meas/sources/source_const_aggregate.h, lib/meas/sources/source_smearing_aggregate.cc, lib/meas/sources/source_smearing_aggregate.h, lib/meas/sources/wall_source_const.cc, lib/meas/sources/wall_source_const.h, lib/update/molecdyn/integrator/integrator_aggregate.cc, lib/update/molecdyn/integrator/integrator_aggregate.h, lib/update/molecdyn/integrator/lcm_minimum_norm2_integrator.cc, lib/update/molecdyn/integrator/lcm_minimum_norm2_integrator.h, lib/update/molecdyn/integrator/lcm_minimum_norm2_integrator_mts.cc, lib/update/molecdyn/integrator/lcm_minimum_norm2_integrator_mts.h, lib/update/molecdyn/integrator/lcm_minimum_norm2_qpq_integrator_mts.cc, lib/update/molecdyn/integrator/lcm_minimum_norm2_qpq_integrator_mts.h, lib/update/molecdyn/integrator/lcm_pqp_leapfrog.cc, lib/update/molecdyn/integrator/lcm_pqp_leapfrog.h, lib/update/molecdyn/integrator/lcm_pqp_leapfrog_mts.cc, lib/update/molecdyn/integrator/lcm_pqp_leapfrog_mts.h, lib/update/molecdyn/integrator/lcm_sexton_weingarten.cc, lib/update/molecdyn/integrator/lcm_sexton_weingarten.h, lib/update/molecdyn/integrator/lcm_sw_min_mixed.cc, lib/update/molecdyn/integrator/lcm_sw_min_mixed.h, lib/update/molecdyn/monomial/fixed_random_ferm_monomial.cc, lib/update/molecdyn/monomial/fixed_random_ferm_monomial.h, lib/update/molecdyn/monomial/gauge_monomial.cc, lib/update/molecdyn/monomial/gauge_monomial.h, lib/update/molecdyn/monomial/monomial_aggregate_w.cc, lib/update/molecdyn/monomial/monomial_aggregate_w.h, lib/update/molecdyn/monomial/prec_constdet_one_flavor_rat_monomial5d_w.cc, lib/update/molecdyn/monomial/prec_constdet_one_flavor_rat_monomial5d_w.h, lib/update/molecdyn/monomial/prec_constdet_one_flavor_rat_monomial_w.cc, lib/update/molecdyn/monomial/prec_constdet_one_flavor_rat_monomial_w.h, lib/update/molecdyn/monomial/prec_constdet_two_flavor_hasenbusch_monomial5d_w.cc, lib/update/molecdyn/monomial/prec_constdet_two_flavor_hasenbusch_monomial5d_w.h, lib/update/molecdyn/monomial/prec_constdet_two_flavor_hasenbusch_monomial_w.cc, lib/update/molecdyn/monomial/prec_constdet_two_flavor_hasenbusch_monomial_w.h, lib/update/molecdyn/monomial/prec_constdet_two_flavor_monomial5d_w.cc, lib/update/molecdyn/monomial/prec_constdet_two_flavor_monomial5d_w.h, lib/update/molecdyn/monomial/prec_constdet_two_flavor_monomial_w.cc, lib/update/molecdyn/monomial/prec_constdet_two_flavor_monomial_w.h, lib/update/molecdyn/monomial/prec_constdet_two_flavor_polynomial_monomial_w.cc, lib/update/molecdyn/monomial/prec_constdet_two_flavor_polynomial_monomial_w.h, lib/update/molecdyn/monomial/prec_constdet_two_flavor_polyprec_monomial_w.cc, lib/update/molecdyn/monomial/prec_constdet_two_flavor_polyprec_monomial_w.h, lib/update/molecdyn/monomial/prec_logdet_ee_monomial_w.cc, lib/update/molecdyn/monomial/prec_logdet_ee_monomial_w.h, lib/update/molecdyn/monomial/prec_logdet_two_flavor_monomial_w.cc, lib/update/molecdyn/monomial/prec_logdet_two_flavor_monomial_w.h, lib/update/molecdyn/monomial/unprec_one_flavor_rat_monomial5d_w.cc, lib/update/molecdyn/monomial/unprec_one_flavor_rat_monomial5d_w.h, lib/update/molecdyn/monomial/unprec_one_flavor_rat_monomial_w.cc, lib/update/molecdyn/monomial/unprec_one_flavor_rat_monomial_w.h, lib/update/molecdyn/monomial/unprec_two_flavor_hasenbusch_monomial5d_w.cc, lib/update/molecdyn/monomial/unprec_two_flavor_hasenbusch_monomial5d_w.h, lib/update/molecdyn/monomial/unprec_two_flavor_hasenbusch_monomial_w.cc, lib/update/molecdyn/monomial/unprec_two_flavor_hasenbusch_monomial_w.h, lib/update/molecdyn/monomial/unprec_two_flavor_monomial5d_w.cc, lib/update/molecdyn/monomial/unprec_two_flavor_monomial5d_w.h, lib/update/molecdyn/monomial/unprec_two_flavor_monomial_w.cc, lib/update/molecdyn/monomial/unprec_two_flavor_monomial_w.h, lib/update/molecdyn/predictor/last_solution_predictor.cc, lib/update/molecdyn/predictor/last_solution_predictor.h, lib/update/molecdyn/predictor/linear_extrap_predictor.cc, lib/update/molecdyn/predictor/linear_extrap_predictor.h, lib/update/molecdyn/predictor/lu_solve.cc, lib/update/molecdyn/predictor/mre_extrap_predictor.cc, lib/update/molecdyn/predictor/mre_extrap_predictor.h, lib/update/molecdyn/predictor/predictor_aggregate.cc, lib/update/molecdyn/predictor/predictor_aggregate.h, lib/update/molecdyn/predictor/zero_guess_predictor.cc, lib/update/molecdyn/predictor/zero_guess_predictor.h, mainprogs/main/chroma.cc, mainprogs/main/hmc.cc, mainprogs/main/purgaug.cc, mainprogs/tests/t_dwf4d.cc, mainprogs/tests/t_hamiltonian.cc, mainprogs/tests/t_leapfrog.cc, mainprogs/tests/t_mres_4d.cc, mainprogs/tests/t_prec_twoflav_wilson_monomial.cc, mainprogs/tests/t_precact_4d.cc, mainprogs/tests/t_precact_5d.cc, mainprogs/tests/t_ritz_KS.cc, mainprogs/tests/t_unprec_twoflav_wilson_monomial.cc: Major housecleaning. Changed all the uses of the registration method to now be **runtime**. The "registerAll()" function is exposed that will register the thingy. There is a private "registered" flag that is initially false and then set to true upon registration done at runtime. 2006-09-19 15:10 tag chroma3-14-5 2006-09-19 15:10 edwards * tests/chroma/glue/wilslp/wilslp.ini.xml: Fixed comment. 2006-09-19 14:46 edwards * aclocal.m4, configure: Induced changes 2006-09-19 14:46 edwards * configure.ac: Changed to 3.14.5 2006-09-19 14:45 edwards * NEWS: Info on 3.14.5 2006-09-19 14:38 edwards * lib/update/molecdyn/monomial/: fixed_random_ferm_monomial.cc, fixed_random_ferm_monomial.h: Fixed path to fermstates. 2006-09-19 14:34 edwards * lib/update/molecdyn/monomial/: fixed_random_ferm_monomial.cc, fixed_random_ferm_monomial.h: Lots of changes, but mostly a house cleaning. Moved all gauge states and ferm states to a new gaugestates and fermstates directory. Lots of path changes. 2006-09-19 14:30 edwards * lib/meas/inline/glue/inline_wilslp.cc: Lots of changes, but mostly a house cleaning. Moved all gauge states and ferm states to a new gaugestates and fermstates directory. Lots of path changes. 2006-09-19 14:25 edwards * lib/actions/gauge/gaugeacts/: aniso_spectrum_gaugeact.cc, lw_1loop_gaugeact.cc, lw_tree_gaugeact.cc, pg_gaugeact.cc, plaq_gaugeact.cc, plaq_plus_spatial_two_plaq_gaugeact.cc, rbc_gaugeact.cc, rect_gaugeact.cc, rg_gaugeact.cc, spatial_two_plaq_gaugeact.cc, wilson_gaugeact.cc: Lots of changes, but mostly a house cleaning. Moved all gauge states and ferm states to a new gaugestates and fermstates directory. Lots of path changes. 2006-09-19 14:21 edwards * lib/actions/gauge/gaugestates/: gauge_createstate_aggregate.cc, gauge_createstate_aggregate.h, gauge_createstate_factory.h, gaugestates.h, periodic_gaugestate.cc, periodic_gaugestate.h, simple_gaugestate.cc, simple_gaugestate.h, stout_gaugestate.cc, stout_gaugestate.h: Lots of changes, but mostly a house cleaning. Moved all gauge states and ferm states to a new gaugestates and fermstates directory. Lots of path changes. 2006-09-19 14:08 edwards * lib/actions/ferm/fermacts/: asqtad_fermact_s.cc, poly_cheb_fermact_w.cc, prec_clover_fermact_w.cc, prec_dwf_fermact_array_w.cc, prec_ht_contfrac5d_fermact_array_w.cc, prec_kno_fermact_array_w.cc, prec_nef_fermact_array_w.cc, prec_ovdwf_fermact_array_w.cc, prec_ovext_fermact_array_w.cc, prec_ovlap_contfrac5d_fermact_array_w.cc, prec_parwilson_fermact_w.cc, prec_wilson_fermact_w.cc, prec_zolo_nef_fermact_array_w.cc, unprec_clover_fermact_w.cc, unprec_dwf_fermact_array_w.cc, unprec_dwftransf_fermact_w.cc, unprec_hamberwu_fermact_w.cc, unprec_ht_contfrac5d_fermact_array_w.cc, unprec_nef_fermact_array_w.cc, unprec_ovdwf_fermact_array_w.cc, unprec_ovext_fermact_array_w.cc, unprec_ovlap_contfrac5d_fermact_array_w.cc, unprec_parwilson_fermact_w.cc, unprec_w12_fermact_w.cc, unprec_wilson_fermact_w.cc, unprec_zolo_nef_fermact_array_w.cc: Fixed path to ferm_createstate_reader. 2006-09-19 14:00 edwards * tests/purgaug/: purgaug.ini.xml, purgaug.out.xml, purgaug.sfnonpt.ini.xml, purgaug.sfnonpt.out.xml: Updated tests. 2006-09-19 13:53 edwards * lib/actions/ferm/fermstates/: asqtad_state.h, eigen_state.h, extfield.h, extfield_aggregate_w.cc, extfield_aggregate_w.h, extfield_factory_w.h, extfield_fermstate_w.cc, extfield_fermstate_w.h, ferm_createstate_aggregate_s.cc, ferm_createstate_aggregate_s.h, ferm_createstate_aggregate_w.cc, ferm_createstate_aggregate_w.h, ferm_createstate_factory_s.h, ferm_createstate_factory_w.h, ferm_createstate_reader_s.cc, ferm_createstate_reader_s.h, ferm_createstate_reader_w.cc, ferm_createstate_reader_w.h, fermstates.h, overlap_state.cc, overlap_state.h, periodic_fermstate.h, periodic_fermstate_s.cc, periodic_fermstate_s.h, periodic_fermstate_w.cc, periodic_fermstate_w.h, simple_fermstate.h, simple_fermstate_s.cc, simple_fermstate_s.h, simple_fermstate_w.cc, simple_fermstate_w.h, stout_fermstate_params.cc, stout_fermstate_params.h, stout_fermstate_w.cc, stout_fermstate_w.h: Lots of changes, but mostly a house cleaning. Moved all gauge states and ferm states to a new gaugestates and fermstates directory. Lots of path changes. 2006-09-19 12:15 edwards * tests/chroma/glue/wilslp/wilslp.out.xml: Fixed a comment. 2006-09-19 12:05 edwards * lib/actions/ferm/fermacts/: prec_clover_extfield_fermact_w.cc, prec_clover_extfield_fermact_w.h: Added back in. Accidentally removed. 2006-09-19 12:04 edwards * lib/Makefile.am, lib/actions/ferm/ferm.h, lib/actions/ferm/fermacts/asqtad_fermact_s.h, lib/actions/ferm/fermacts/asqtad_state.h, lib/actions/ferm/fermacts/eigen_state.h, lib/actions/ferm/fermacts/extfield.h, lib/actions/ferm/fermacts/extfield_aggregate_w.cc, lib/actions/ferm/fermacts/extfield_aggregate_w.h, lib/actions/ferm/fermacts/extfield_factory_w.h, lib/actions/ferm/fermacts/extfield_fermstate_w.cc, lib/actions/ferm/fermacts/extfield_fermstate_w.h, lib/actions/ferm/fermacts/ferm_createstate_aggregate_s.cc, lib/actions/ferm/fermacts/ferm_createstate_aggregate_s.h, lib/actions/ferm/fermacts/ferm_createstate_aggregate_w.cc, lib/actions/ferm/fermacts/ferm_createstate_aggregate_w.h, lib/actions/ferm/fermacts/ferm_createstate_factory_s.h, lib/actions/ferm/fermacts/ferm_createstate_factory_w.h, lib/actions/ferm/fermacts/ferm_createstate_reader_s.cc, lib/actions/ferm/fermacts/ferm_createstate_reader_s.h, lib/actions/ferm/fermacts/ferm_createstate_reader_w.cc, lib/actions/ferm/fermacts/ferm_createstate_reader_w.h, lib/actions/ferm/fermacts/fermacts.h, lib/actions/ferm/fermacts/fermacts_aggregate_w.cc, lib/actions/ferm/fermacts/fermacts_s.h, lib/actions/ferm/fermacts/fermacts_w.h, lib/actions/ferm/fermacts/overlap_fermact_base_w.cc, lib/actions/ferm/fermacts/overlap_state.cc, lib/actions/ferm/fermacts/overlap_state.h, lib/actions/ferm/fermacts/ovlap_partfrac4d_fermact_w.cc, lib/actions/ferm/fermacts/ovlap_partfrac4d_fermact_w.h, lib/actions/ferm/fermacts/periodic_fermstate.h, lib/actions/ferm/fermacts/periodic_fermstate_s.cc, lib/actions/ferm/fermacts/periodic_fermstate_s.h, lib/actions/ferm/fermacts/periodic_fermstate_w.cc, lib/actions/ferm/fermacts/periodic_fermstate_w.h, lib/actions/ferm/fermacts/prec_clover_extfield_fermact_w.cc, lib/actions/ferm/fermacts/prec_clover_extfield_fermact_w.h, lib/actions/ferm/fermacts/prec_slic_fermact_w.cc, lib/actions/ferm/fermacts/simple_fermstate.h, lib/actions/ferm/fermacts/simple_fermstate_s.cc, lib/actions/ferm/fermacts/simple_fermstate_s.h, lib/actions/ferm/fermacts/simple_fermstate_w.cc, lib/actions/ferm/fermacts/simple_fermstate_w.h, lib/actions/ferm/fermacts/stout_fermact_params.cc, lib/actions/ferm/fermacts/stout_fermact_params.h, lib/actions/ferm/fermacts/stout_fermstate_params.cc, lib/actions/ferm/fermacts/stout_fermstate_params.h, lib/actions/ferm/fermacts/stout_fermstate_w.cc, lib/actions/ferm/fermacts/stout_fermstate_w.h, lib/actions/ferm/fermacts/stout_state.cc, lib/actions/ferm/fermacts/stout_state.h, lib/actions/ferm/fermacts/stout_utils.cc, lib/actions/ferm/fermacts/stout_utils.h, lib/actions/ferm/fermacts/unprec_ovext_fermact_array_w.h, lib/actions/ferm/fermacts/unprec_ovlap_contfrac5d_fermact_array_w.cc, lib/actions/ferm/fermacts/unprec_ovlap_contfrac5d_fermact_array_w.h, lib/actions/ferm/linop/asq_dsl_s.h, lib/actions/ferm/linop/prec_clover_extfield_linop_w.cc, lib/actions/ferm/linop/prec_slic_linop_w.h, lib/actions/gauge/gauge.h, lib/actions/gauge/gaugeacts/gauge_createstate_aggregate.cc, lib/actions/gauge/gaugeacts/gauge_createstate_aggregate.h, lib/actions/gauge/gaugeacts/gauge_createstate_factory.h, lib/actions/gauge/gaugeacts/gaugeacts.h, lib/actions/gauge/gaugeacts/gaugeacts_aggregate.cc, lib/actions/gauge/gaugeacts/simple_gaugestate.cc, lib/actions/gauge/gaugeacts/simple_gaugestate.h, lib/actions/gauge/gaugeacts/stout_gaugestate.cc, lib/actions/gauge/gaugeacts/stout_gaugestate.h, lib/util/gauge/stout_utils.cc, lib/util/gauge/stout_utils.h, mainprogs/tests/t_aniso_gaugeact.cc, mainprogs/tests/t_stout_state.cc: Lots of changes, but mostly a house cleaning. Moved all gauge states and ferm states to a new gaugestates and fermstates directory. Lots of path changes. 2006-09-19 12:02 edwards * lib/meas/inline/glue/: inline_wilslp.cc, inline_wilslp.h: Now have an optional gaugestate reader. 2006-09-19 12:01 edwards * tests/chroma/glue/wilslp/: wilslp.ini.xml, wilslp.out.xml: New form of gaugestate input. 2006-09-19 09:54 tag chroma3-14-4 2006-09-19 09:54 bjoo * configure, configure.ac: Simplified flags. Bumped up version tag in configure.ac 2006-09-19 09:18 bjoo * configure, configure.ac, other_libs/cg-dwf/configure, other_libs/cg-dwf/configure.ac: Simplified the flags for --enable-cg-dwf 2006-09-18 21:50 edwards * lib/actions/gauge/gaugebcs/periodic_gaugebc.h: Added emacs control. 2006-09-18 17:04 tag chroma3-14-3 2006-09-18 17:04 bjoo * configure, configure.ac, lib/Makefile.am, lib/actions/ferm/qprop/avp_altivecf_solver.cc, lib/actions/ferm/qprop/avp_altivecf_solver.h, lib/actions/ferm/qprop/dwf_qpropt_w.h, lib/actions/ferm/qprop/prec_dwf_qprop_array_cg_dwf_w.h: Should now be able to use CG-DWF for bluelight (in the presence of AVPs compiler) and AltiVec 2006-09-18 16:28 bjoo * lib/actions/ferm/qprop/: avp_bgld_solver.cc, avp_bgld_solver.h, avp_bglf_solver.cc, avp_bglf_solver.h: Initial conversions for BlueGene 2006-09-18 16:11 bjoo * other_libs/cg-dwf/: aclocal.m4, cg-dwf-config-internal.h.in, configure: Induced changes 2006-09-18 16:11 bjoo * other_libs/cg-dwf/: cg-dwf-config.h, configure.ac: Now define architecture flag in cg-dwf-config.h 2006-09-18 15:53 tag chroma3-14-2 2006-09-18 15:53 bjoo * lib/actions/ferm/qprop/: avp_inverter_interface.h, avp_sse_solver.h: min_iter = 0 now works in v1.3.3 2006-09-18 15:45 tag chroma3-14-1 2006-09-18 15:45 bjoo * lib/actions/ferm/qprop/prec_dwf_qprop_array_cg_dwf_w.h: Single Double Prec now works 2006-09-18 15:30 bjoo * lib/actions/ferm/qprop/: avp_inverter_interface.h, avp_ssed_solver.cc, avp_ssed_solver.h, avp_ssef_solver.cc, avp_ssef_solver.h, prec_dwf_qprop_array_cg_dwf_w.h: patched for version 1.3.3 reverted to previous model of init and fini 2006-09-18 15:08 bjoo * other_libs/cg-dwf/: aclocal.m4, configure, configure.ac, dwf.c, dwf.nw: v 1.3.3 patch test 2006-09-18 14:23 tag chroma3-14-0 2006-09-18 14:23 bjoo * lib/actions/ferm/qprop/prec_dwf_qprop_array_cg_dwf_w.h, tests/chroma/hadron/propagator/prec_dwf.out.xml: Fixed n_count output 2006-09-18 14:12 bjoo * tests/chroma/hadron/propagator/: prec_dwf.ini.xml, prec_dwf.out.xml: New regres for prec_dwf.ini.xml - retries set to 1 and so the output structure has changed 2006-09-18 13:29 bjoo * lib/actions/ferm/qprop/prec_dwf_qprop_array_cg_dwf_w.h: Removed unwanted ifdef 2006-09-18 10:17 bjoo * lib/actions/ferm/qprop/: avp_inverter_interface.h, avp_ssed_solver.cc, avp_ssed_solver.h, avp_ssef_solver.cc, avp_ssef_solver.h, prec_dwf_qprop_array_cg_dwf_w.h: DWF Prop Phase B Done 2006-09-16 12:55 edwards * lib/meas/hadron/: group_baryon_operator_w.cc, group_baryon_operator_w.h: Jimmy Juge's new version of these routines do not compile. I'm reinserting the previous version in front of these to at least let them compile and pass the regression tests. 2006-09-16 12:33 edwards * lib/actions/ferm/qprop/: avp_ssed_solver.cc~, avp_ssed_solver.h~, avp_ssef_solver.cc~, avp_ssef_solver.h~: Inadvertantly added. 2006-09-16 01:20 juge * lib/meas/hadron/group_baryon_operator_w.cc: This is the code which goes with the comments of group_baryon_operator_w.h 2006-09-16 01:18 juge * lib/meas/hadron/group_baryon_operator_w.h: Checking in the change in the approach of the all-to-all code. The code is not written yet, but the new approach is outlined and basic skeleton is described. A perl script which generates the input file is also given at the very end. This final approach where the baryon operators are built-up from QQQ building blocks which are never recomputed should be the final change in the "philosophy" of the program. One final reduction may be to avoid having an array of the QQQ class and just run through them one at a time. This code is still being worked on but is being checked in because I can no longer come up with ways to make it more efficient and so the approach should not change anymore. 2006-09-16 01:01 tag help 2006-09-16 01:01 bjoo * lib/actions/ferm/qprop/: avp_inverter_interface.h, dwf_qpropt_w.h, prec_dwf_qprop_array_cg_dwf_w.h: More arsing about 2006-09-15 23:25 bjoo * lib/Makefile.am: MAkefiles 2006-09-15 23:24 bjoo * lib/actions/ferm/qprop/: avp_inverter_interface.h, avp_sse_solver.h, avp_ssed_solver.cc, avp_ssed_solver.cc~, avp_ssed_solver.h, avp_ssed_solver.h~, avp_ssef_solver.cc, avp_ssef_solver.cc~, avp_ssef_solver.h, avp_ssef_solver.h~, dwf_qpropt_w.h, prec_dwf_qprop_array_cg_dwf_w.h: Code Factor 2006-09-15 15:22 bjoo * lib/actions/ferm/qprop/: avp_inverter_interface.cc, avp_inverter_interface.h, avp_sse_solver.h, dwf_qpropt_w.h, prec_dwf_qprop_array_cg_dwf_w.h, prec_dwf_qprop_array_cg_dwf_w.cc: Newer structure 2006-09-15 15:21 bjoo * lib/Makefile.am: New Makefile.am 2006-09-15 11:28 edwards * scripts/run_chroma_xmldiff.pl: Changed to now support either a "log" or and "output" entry. 2006-09-15 11:27 edwards * tests/t_leapfrog/: regres.pl, t_leapfrog.aniso_spectrum.log.xml, t_leapfrog.aniso_spectrum.out.xml, t_leapfrog.fixed_X_action_stout.log.xml, t_leapfrog.fixed_X_action_stout.out.xml, t_leapfrog.lw.sfnonpt.log.xml, t_leapfrog.lw.sfnonpt.out.xml, t_leapfrog.parwilson_minimal_norm_2nd_order_integrator_mts.log.xml, t_leapfrog.parwilson_minimal_norm_2nd_order_integrator_mts.out.xml, t_leapfrog.parwilson_minimal_norm_2nd_order_qpq_integrator_mts.log.xml, t_leapfrog.parwilson_minimal_norm_2nd_order_qpq_integrator_mts.out.xml, t_leapfrog.parwilson_pqp_integrator_mts.log.xml, t_leapfrog.parwilson_pqp_integrator_mts.out.xml, t_leapfrog.prec_1flav_dwf.log.xml, t_leapfrog.prec_1flav_dwf.out.xml, t_leapfrog.prec_1flav_wilson.log.xml, t_leapfrog.prec_1flav_wilson.out.xml, t_leapfrog.prec_2flav_clover.log.xml, t_leapfrog.prec_2flav_clover.out.xml, t_leapfrog.prec_2flav_clover.sfnonpt.log.xml, t_leapfrog.prec_2flav_clover.sfnonpt.out.xml, t_leapfrog.prec_2flav_clover_ee_oo.log.xml, t_leapfrog.prec_2flav_clover_ee_oo.out.xml, t_leapfrog.prec_clover_stout.log.xml, t_leapfrog.prec_clover_stout.out.xml, t_leapfrog.prec_contfrac.log.xml, t_leapfrog.prec_contfrac.out.xml, t_leapfrog.prec_dwf.log.xml, t_leapfrog.prec_dwf.out.xml, t_leapfrog.prec_hasenbusch_wilson.log.xml, t_leapfrog.prec_hasenbusch_wilson.out.xml, t_leapfrog.prec_parwilson.log.xml, t_leapfrog.prec_parwilson.out.xml, t_leapfrog.prec_wilson.log.xml, t_leapfrog.prec_wilson.out.xml, t_leapfrog.rect_gaugeact.log.xml, t_leapfrog.rect_gaugeact.out.xml, t_leapfrog.rect_gaugeact_1.log.xml, t_leapfrog.rect_gaugeact_1.out.xml, t_leapfrog.rect_gaugeact_aniso.log.xml, t_leapfrog.rect_gaugeact_aniso.out.xml, t_leapfrog.rect_gaugeact_c1t0.log.xml, t_leapfrog.rect_gaugeact_c1t0.out.xml, t_leapfrog.rect_gaugeact_omit2linkT.log.xml, t_leapfrog.rect_gaugeact_omit2linkT.out.xml, t_leapfrog.two_plaq_spatial_gaugeact.log.xml, t_leapfrog.two_plaq_spatial_gaugeact.out.xml, t_leapfrog.unprec_clover.log.xml, t_leapfrog.unprec_clover.out.xml, t_leapfrog.unprec_dwf.log.xml, t_leapfrog.unprec_dwf.out.xml, t_leapfrog.unprec_hasenbusch_wilson.log.xml, t_leapfrog.unprec_hasenbusch_wilson.out.xml, t_leapfrog.unprec_wilson.log.xml, t_leapfrog.unprec_wilson.out.xml: Changed out.xml files to log.xml files. The regression file is now updated to use a "log" entry saying to do the tests of that xml output. 2006-09-15 11:06 edwards * mainprogs/tests/: t_hamiltonian.cc, t_hmc_pg.cc, t_leapfrog.cc: Split output to also have log file. 2006-09-15 09:47 bjoo * other_libs/cg-dwf/: aclocal.m4, configure, configure.ac: Changed configure script to look first for bgl-gcc for bluelight builds 2006-09-15 09:16 bjoo * other_libs/cg-dwf/: Makefile.original, algorithm2e.sty, configure.ac, dwf-altivecf.c, dwf-bluelightd.c, dwf-bluelightf.c, dwf-ssed.c, dwf-ssef.c, dwf-tables.h, dwf.c, dwf.nw, dwf.pdf, interface.pdf, config/altivecf-debug.conf, config/bluelightd-debug.conf, config/bluelightd.conf, config/bluelightf.conf, tests/qdpc/Makefile, tests/qdpc/README, tests/qdpc/cg-solver.c, tests/qdpc/cg-solver1.c, tests/qdpc/dwf-dd.c, tests/qdpc/dwf-dd1.c, tests/qdpc/dwf-op.c, tests/qdpc/dwf-op1.c, tests/qdpc/dwf-opx.c, tests/qdpc/dwf-opx1.c, tests/qdpc/dwf1-run, tests/qdpc/dwf1-run-s, tests/qdpc/fermions.c, tests/qdpc/test-case-args, tests/ssef/Makefile, tests/ssef/README, tests/ssef/bl.c, tests/ssef/main.c, tests/xqmp/Makefile, tests/xqmp/qmp.c, aclocal.m4, configure: First attempt at merging 1.3.2 changes 2006-09-14 22:59 tag chroma3-13-0 2006-09-14 22:59 edwards * NEWS: Info on 3.13.0 2006-09-14 22:53 edwards * tests/hmc/: hmc.prec_parwilson.ini.xml, iw_b2p2_16_32_cfz_Nf3_m0p02_ls8.xml.ini: Removed. 2006-09-14 22:53 edwards * tests/hmc/: hmc.prec_wilson.ini.xml, hmc.prec_wilson.out.xml: Changed number of updates. Now, split output to XMLLOG and XMLDAT. 2006-09-14 22:51 edwards * mainprogs/main/hmc.cc: Split output to go XMLLOG and XMLDAT. 2006-09-14 22:50 edwards * lib/update/molecdyn/: hamiltonian/abs_hamiltonian.h, hamiltonian/exact_hamiltonian.h, hmc/abs_hmc.h, integrator/abs_integrator.h, integrator/lcm_integrator_leaps.cc, integrator/lcm_minimum_norm2_integrator_mts.cc, integrator/lcm_minimum_norm2_qpq_integrator_mts.cc, integrator/lcm_pqp_leapfrog_mts.cc, integrator/lcm_sexton_weingarten.cc, monomial/fixed_random_ferm_monomial.cc, monomial/gauge_monomial.h, monomial/one_flavor_rat_monomial5d_w.h, monomial/one_flavor_rat_monomial_w.h, monomial/prec_logdet_ee_monomial_w.h, monomial/two_flavor_hasenbusch_monomial5d_w.h, monomial/two_flavor_hasenbusch_monomial_w.h, monomial/two_flavor_monomial5d_w.h, monomial/two_flavor_monomial_w.h, monomial/two_flavor_polynomial_monomial_w.h, monomial/two_flavor_polyprec_monomial_w.h: Changed output to go to XMLLOG. 2006-09-14 22:48 edwards * lib/io/xmllog_io.h: Changed singleton to disambiguate. 2006-09-14 22:46 edwards * lib/singleton.h: Added DefaultLifetime{1,2} to help with disambiguation. 2006-09-14 22:44 edwards * configure: Induced changes 2006-09-14 22:41 edwards * aclocal.m4: Induced changes 2006-09-14 22:39 edwards * configure.ac: Changed to 3.13.0 2006-09-14 21:43 edwards * tests/hmc/: dbw2_bp764_16_32_cfz_Nf3_m0p02_ls8.xml.ini, hmc.prec_1flav_dwf.xml.ini, hmc.prec_1flav_stout_dwf.xml.ini, hmc.prec_1flav_wilson.xml.ini, hmc.prec_3flav_dwf.xml.ini, hmc.prec_contfrac.xml.ini, hmc.prec_dwf.xml.ini, hmc.prec_mixed_wilson.xml.ini, hmc.prec_parwilson.xml.ini, hmc.prec_stout_dwf.xml.ini, hmc.prec_stout_wilson.xml.ini, hmc.prec_wilson.xml.ini, hmc.unprec_stout_dwf.xml.ini, hmc.unprec_stout_wilson.xml.ini, hmctest.in.xml, iw_b2p2_16_32_cfz_Nf3_m0p024_ls6.xml.ini, iw_b2p2_16_32_cfz_Nf3_m0p024_ls6_bjoo.xml.ini, iw_b2p2_8_16_cfz_Nf3_m0p03_ls8_dt0p005.ini.xml, iw_b2p2_dwf_Nf3_m0p04_ls8.xml.ini: Removed obsolete input files. 2006-09-14 10:48 edwards * other_libs/cg-dwf/: dwf-ssed.c, dwf.nw: Changed double prec vector types to new intel intrinsics. 2006-09-14 10:46 bjoo * other_libs/cg-dwf/dwf-ssed.c: dwf-ssed.c -> m128d 2006-09-14 10:06 edwards * other_libs/cg-dwf/: dwf-ssef.c, dwf.nw: Changes to support new style vector intrinsics required by gcc4. 2006-09-14 10:05 edwards * other_libs/cg-dwf/Makefile.original: Added directory to find noweb stuff 2006-09-13 22:55 edwards * lib/io/qprop_io.cc: Added check of FermState/FermionBC/boundary. 2006-09-13 15:11 bjoo * configure, configure.ac, lib/Makefile.am, lib/chroma_config_internal.h.in, mainprogs/main/Makefile.am, mainprogs/tests/Makefile.am: Integrated AVPs double precision stuff 2006-09-13 15:06 bjoo * lib/actions/ferm/qprop/: dwf_qpropt_w.h, prec_dwf_qprop_array_cg_dwf_w.cc, prec_dwf_qprop_array_cg_dwf_w.h: Integration of newst DWF inverter 2006-09-13 14:14 bjoo * other_libs/: Makefile.am, cg-dwf/Makefile.am, cg-dwf/configure: Added cg-dwf 2006-09-13 14:10 bjoo * other_libs/cg-dwf/autoconfdir/: config.guess, config.sub: Added extra files 2006-09-13 14:09 bjoo * other_libs/cg-dwf/: aclocal.m4, cg-dwf-config-internal.h.in, cg-dwf-config.h, configure.ac: Added .h files to hide autoconf macros in 2006-09-13 13:39 bjoo * other_libs/cg-dwf/tests/: qdpc/.gdb_history, xqmp/.gdb_history: Removed .gdb_history files 2006-09-13 13:36 bjoo * other_libs/cg-dwf/: AUTHORS, COPYING, INSTALL, Makefile.am, Makefile.original, NEWS, README, acinclude.m4, aclocal.m4, algorithm2e.sty, cg-dwf-config.in, configure, configure.ac, dwf-altivecf.c, dwf-altivecf.h, dwf-bluelightd.c, dwf-bluelightd.h, dwf-bluelightf.c, dwf-bluelightf.h, dwf-ssed.c, dwf-ssed.h, dwf-ssef.c, dwf-ssef.h, dwf-tables.h, dwf.c, dwf.nw, dwf.pdf, interface.nw, interface.pdf, autoconfdir/depcomp, autoconfdir/install-sh, autoconfdir/missing, config/altivecf.conf, config/bluelightd.conf, config/default, config/ssed.conf, config/ssef.conf, tests/bluelight/Makefile, tests/bluelight/README, tests/bluelight/bl.c, tests/bluelight/main.c, tests/qdpc/.DS_Store, tests/qdpc/8-3-16-2-1-altivecf-single, tests/qdpc/8-3-16-2-altivecf-single, tests/qdpc/Makefile, tests/qdpc/cg-solver.c, tests/qdpc/dwf-op.c, tests/qdpc/dwf-run, tests/qdpc/dwf-run-s, tests/qdpc/op-altivecf.res, tests/qdpc/results, tests/qdpc/run-me, tests/xqmp/.gdb_history, tests/xqmp/Makefile, tests/xqmp/README, tests/xqmp/qmp-check.c, tests/xqmp/qmp.c, tests/qdpc/.gdb_history, tests/qdpc/8-3-16-2-1-ssed-single, tests/qdpc/8-3-16-2-1-ssef-single, tests/qdpc/8-3-16-2-ssed-single, tests/qdpc/8-3-16-2-ssef-single, tests/qdpc/README, tests/qdpc/cg-solver1.c, tests/qdpc/op-ssed.res, tests/qdpc/op-ssef.res, tests/qdpc/ssed-test: Imported sources 2006-09-13 13:36 bjoo * other_libs/cg-dwf/: AUTHORS, COPYING, INSTALL, Makefile.am, Makefile.original, NEWS, README, acinclude.m4, aclocal.m4, algorithm2e.sty, cg-dwf-config.in, configure, configure.ac, dwf-altivecf.c, dwf-altivecf.h, dwf-bluelightd.c, dwf-bluelightd.h, dwf-bluelightf.c, dwf-bluelightf.h, dwf-ssed.c, dwf-ssed.h, dwf-ssef.c, dwf-ssef.h, dwf-tables.h, dwf.c, dwf.nw, dwf.pdf, interface.nw, interface.pdf, autoconfdir/depcomp, autoconfdir/install-sh, autoconfdir/missing, config/altivecf.conf, config/bluelightd.conf, config/default, config/ssed.conf, config/ssef.conf, tests/bluelight/Makefile, tests/bluelight/README, tests/bluelight/bl.c, tests/bluelight/main.c, tests/qdpc/.DS_Store, tests/qdpc/8-3-16-2-1-altivecf-single, tests/qdpc/8-3-16-2-altivecf-single, tests/qdpc/Makefile, tests/qdpc/cg-solver.c, tests/qdpc/dwf-op.c, tests/qdpc/dwf-run, tests/qdpc/dwf-run-s, tests/qdpc/op-altivecf.res, tests/qdpc/results, tests/qdpc/run-me, tests/xqmp/.gdb_history, tests/xqmp/Makefile, tests/xqmp/README, tests/xqmp/qmp-check.c, tests/xqmp/qmp.c, tests/qdpc/.gdb_history, tests/qdpc/8-3-16-2-1-ssed-single, tests/qdpc/8-3-16-2-1-ssef-single, tests/qdpc/8-3-16-2-ssed-single, tests/qdpc/8-3-16-2-ssef-single, tests/qdpc/README, tests/qdpc/cg-solver1.c, tests/qdpc/op-ssed.res, tests/qdpc/op-ssef.res, tests/qdpc/ssed-test: Initial revision 2006-09-11 15:35 bjoo * scripts/test_runners/mpirun_rsh_runner.sh.in: Modified this for mvapich-0.9.8 running 2006-09-09 12:57 tag chroma3-12-0 2006-09-09 12:57 edwards * aclocal.m4, configure: Induced changes 2006-09-09 12:55 edwards * configure.ac: Changed to 3.12.0 2006-09-09 12:54 edwards * NEWS: Info on 3.12.0 2006-09-08 12:33 edwards * scripts/test_runners/mpirun_rsh_runner.sh.in: Changed run nodes to qcd6n319 and qcd6n320 2006-09-08 00:34 edwards * lib/actions/ferm/fermacts/fermacts_aggregate_w.cc: Comment out the external field stuff for the moment. 2006-09-07 15:11 edwards * lib/meas/inline/inline.h: Added missing include of schrfun.h 2006-09-07 10:02 bjoo * lib/actions/ferm/fermacts/stout_utils.cc: Added a (REAL) cast to sqrt(2) to stop BG/L builds complaining about ambiguity in the sqrt 2006-09-07 09:16 bjoo * mainprogs/tests/t_stout_state.cc: Updated t_stout_state to stop the nightly failures 2006-09-07 00:24 edwards * lib/actions/: ferm/fermacts/ferm_createstate_aggregate_w.cc, ferm/fermacts/ferm_createstate_reader_w.cc, ferm/fermacts/fermacts_aggregate_w.cc, ferm/fermacts/prec_clover_fermact_w.cc, ferm/fermacts/prec_dwf_fermact_array_w.cc, gauge/gaugeacts/gauge_createstate_aggregate.cc, gauge/gaugeacts/gaugeacts_aggregate.cc: Rearranged where ferm_createstate and gauge_createstate are registered. Removed from clover & dwf code. Now the registrations are properly in the fermact or gaugeact registrations. The old way of having a bool registered within the readers was incorrect. 2006-09-07 00:22 edwards * lib/actions/ferm/fermacts/stout_utils.cc: Changed QMP_fprintf to simply fprintf. 2006-09-06 21:26 bjoo * lib/: Makefile.am, actions/ferm/fermacts/prec_dwf_fermact_array_w.cc, actions/ferm/invert/invcg2_array.cc, actions/gauge/gaugeacts/gauge_createstate_aggregate.cc, actions/gauge/gaugeacts/stout_gaugestate.cc, actions/gauge/gaugeacts/stout_gaugestate.h, actions/gauge/gaugebcs/simple_gaugebc.h: Added stout gaugestate. Deriv doesnt work yet. 2006-09-06 15:05 bjoo * aclocal.m4, lib/Makefile.am, lib/actions/ferm/linop/prec_slic_linop_w.cc, lib/update/molecdyn/monomial/fixed_random_ferm_monomial.cc, lib/update/molecdyn/monomial/fixed_random_ferm_monomial.h, mainprogs/tests/t_stout_state.cc: Factored the getQsAndC and getFsAndBs and stout_smear and deriv_recurse functions off into stout_utils.h and stout_utils.cc and added template parameters to the stout_fermstate for eventual use in chiral fermions. Checked things still work and they do. Next move is to introduce a stout gauge state 2006-09-06 14:59 bjoo * lib/actions/ferm/fermacts/: stout_fermstate_w.cc, stout_fermstate_w.h, stout_utils.cc, stout_utils.h: Moved most of the stouting functions into stout_utils.h and cc from here. Also template ified the whole thing so that eventually we can use stouting in DWF 2006-09-06 10:31 edwards * lib/update/molecdyn/integrator/lcm_pqp_leapfrog_mts.h: Added sanity check on length of monomial group versus the number of step sizes. 2006-09-06 09:41 bjoo * tests/t_leapfrog/: t_leapfrog.fixed_X_action_stout.out.xml, t_leapfrog.prec_clover_stout.out.xml: New regression test output 2006-09-06 09:38 bjoo * lib/actions/ferm/fermacts/stout_fermstate_w.cc: Reworked debugging output 2006-09-06 09:18 bjoo * lib/actions/ferm/fermacts/: stout_fermstate_w.cc, stout_fermstate_w.h: Added extra filtering onto stout fermact for corner cases 2006-09-05 23:43 edwards * lib/actions/ferm/qprop/: asqtad_cps_wrapper_qprop.h, asqtad_qprop.h, dwf_qpropt_w.h, dwf_quarkprop4_w.h, nef_quarkprop4_w.h, qprop.h, qprop_w.h, quarkprop4_multi_w.h, quarkprop4_s.h, quarkprop4_w.h: Added emacs controls. 2006-09-02 22:26 edwards * lib/actions/ferm/fermacts/stout_fermstate_w.cc: Changed how corner case is handled. Now there is a flag set and the corner case code is called if various conditions are met. The problems seem to be that c1 can be moderately large (0.0125) but have c0abs/c0max=1 within precision causing theta to go to nan. So, we now check for the closeness of c0abs-c0max only if the small c1 case is not met. 2006-09-02 20:11 edwards * lib/actions/ferm/fermacts/stout_fermstate_w.cc: Bug fix!! There was a b1[2].real() that should have been should have been imag(). 2006-09-01 15:36 edwards * lib/actions/ferm/fermacts/stout_fermstate_w.cc: Changed cutoff on corner case from 1.0e-4 to 4.0e-3. With the previous value I still ran into nan's. Also, Colin Morningstart used this new value. 2006-08-31 16:03 bjoo * tests/t_leapfrog/: t_leapfrog.fixed_X_action_stout.out.xml, t_leapfrog.prec_clover_stout.ini.xml, t_leapfrog.prec_clover_stout.out.xml: Added new regressions to stout force 2006-08-31 12:40 bjoo * lib/actions/ferm/fermacts/stout_fermstate_w.cc: Patched for when c0 and c1 are small. Now works for unit gauge too 2006-08-30 21:31 bjoo * lib/util/gauge/eesu3.cc: Added a missing 0 2006-08-30 00:59 edwards * tests/t_leapfrog/t_leapfrog.fixed_X_action_stout.out.xml: Updated test with new binary. 2006-08-29 23:18 tag chroma3-11-2 2006-08-29 23:18 edwards * aclocal.m4, configure: Induced changes 2006-08-29 23:16 edwards * configure.ac: Changed to 3.11.2 2006-08-29 23:16 edwards * NEWS: More info on 3.11.2 2006-08-29 23:15 edwards * NEWS: Info on 3.11.2 2006-08-29 22:57 edwards * lib/meas/inline/hadron/inline_hadspec_w.cc: Changed hadspec to check for the presence of DisplacementType, and if not present assume it is NONE. 2006-08-29 22:56 edwards * lib/io/qprop_io.cc: Changed backwards compatibility support for disp_length and disp_dir to now write out the SIMPLE_DISPLACEMENT group. 2006-08-29 22:10 edwards * lib/util/ft/sftmom.cc: Technically a bug fix. The test for a zero_offset should only be in directions not in the fourier transform. E.g., there was a missing test of mu==decay_dir. 2006-08-29 21:44 edwards * lib/io/qprop_io.cc: Small bug fix. The path to "FermionAction" in ChromaProp in versions 4 thu 6 needed "/FermionAction". 2006-08-29 11:58 edwards * lib/actions/ferm/fermacts/stout_fermstate_w.cc: Turned off debugging. 2006-08-29 11:51 edwards * scripts/test_runners/mpirun_rsh_runner.sh.in: Changed machine names. 2006-08-28 17:44 edwards * lib/actions/ferm/fermacts/stout_fermstate_w.cc: Put in a fix for a check of theta. However, still left in some debugging that should be removed. Set cutoff to 1.0e-6. 2006-08-26 01:51 edwards * lib/meas/gfix/polar_dec.h: Doxygen fix. 2006-08-26 01:50 edwards * lib/actions/ferm/linop/: clover_term_base_w.cc, lwldslash_base_array_w.cc, lwldslash_base_array_w.h, lwldslash_base_w.cc, lwldslash_base_w.h, polynomial_op.h, unprec_hamberwu_linop_w.cc, unprec_parwilson_linop_w.cc, unprec_w12_linop_w.cc, unprec_wilson_linop_w.cc: Doxygen fixes. 2006-08-26 01:44 edwards * lib/: linearop.h, actions/ferm/linop/clover_term_base_w.h: Doxygen fixes. 2006-08-26 01:42 edwards * lib/actions/ferm/linop/: polprec_op.h, polynomial_op.h: Fixed doxygen comments 2006-08-26 01:40 edwards * lib/: linearop.h, state.h: Fixed doxygen comments. 2006-08-25 22:13 edwards * mainprogs/tests/t_leapfrog.cc: Added some START_CODE/END_CODE 2006-08-25 22:12 edwards * mainprogs/main/: chroma.cc, hmc.cc, purgaug.cc: Added some START_CODE/END_CODE. 2006-08-25 22:08 edwards * lib/: actions/ferm/fermbcs/schroedinger_fermbc_w.h, actions/ferm/fermbcs/simple_fermbc.h, actions/ferm/fermbcs/twisted_fermbc_w.h, actions/ferm/linop/lwldslash_array_pab_w.cc, actions/ferm/linop/lwldslash_array_sse_w.cc, actions/ferm/linop/lwldslash_array_w.cc, actions/ferm/linop/lwldslash_base_w.cc, actions/ferm/linop/prec_dwf_linop_array_w.cc, actions/ferm/linop/prec_slic_linop_w.cc, actions/ferm/linop/prec_wilson_linop_w.cc, actions/ferm/linop/unprec_parwilson_linop_w.cc, actions/ferm/linop/unprec_wilson_linop_w.cc, actions/gauge/gaugeacts/aniso_spectrum_gaugeact.cc, actions/gauge/gaugeacts/lw_1loop_gaugeact.cc, actions/gauge/gaugeacts/lw_tree_gaugeact.cc, actions/gauge/gaugeacts/pg_gaugeact.cc, actions/gauge/gaugeacts/plaq_gaugeact.cc, actions/gauge/gaugeacts/plaq_plus_spatial_two_plaq_gaugeact.cc, actions/gauge/gaugeacts/rbc_gaugeact.cc, actions/gauge/gaugeacts/rect_gaugeact.cc, actions/gauge/gaugeacts/rg_gaugeact.cc, actions/gauge/gaugeacts/spatial_two_plaq_gaugeact.cc, actions/gauge/gaugeacts/wilson_gaugeact.cc, update/molecdyn/hamiltonian/abs_hamiltonian.h, update/molecdyn/hamiltonian/exact_hamiltonian.h, update/molecdyn/hmc/abs_hmc.h, update/molecdyn/hmc/global_metropolis_accrej.cc, update/molecdyn/hmc/global_metropolis_accrej.h, update/molecdyn/hmc/lcm_hmc.h, update/molecdyn/integrator/abs_integrator.h, update/molecdyn/integrator/integrator_aggregate.cc, update/molecdyn/integrator/integrator_aggregate.h, update/molecdyn/integrator/lcm_integrator_leaps.cc, update/molecdyn/integrator/lcm_integrator_leaps.h, update/molecdyn/integrator/lcm_minimum_norm2_integrator.h, update/molecdyn/integrator/lcm_minimum_norm2_integrator_mts.cc, update/molecdyn/integrator/lcm_minimum_norm2_integrator_mts.h, update/molecdyn/integrator/lcm_minimum_norm2_qpq_integrator_mts.cc, update/molecdyn/integrator/lcm_minimum_norm2_qpq_integrator_mts.h, update/molecdyn/integrator/lcm_pqp_leapfrog.h, update/molecdyn/integrator/lcm_pqp_leapfrog_mts.cc, update/molecdyn/integrator/lcm_pqp_leapfrog_mts.h, update/molecdyn/integrator/lcm_sexton_weingarten.cc, update/molecdyn/integrator/lcm_sexton_weingarten.h, update/molecdyn/integrator/lcm_sw_min_mixed.cc, update/molecdyn/integrator/lcm_sw_min_mixed.h, update/molecdyn/integrator/md_integrator_factory.h, update/molecdyn/monomial/fixed_random_ferm_monomial.cc, update/molecdyn/monomial/genapprox.cc, update/molecdyn/monomial/monomial_aggregate_w.cc, update/molecdyn/monomial/one_flavor_rat_monomial5d_w.h, update/molecdyn/monomial/prec_constdet_one_flavor_rat_monomial5d_w.cc, update/molecdyn/monomial/prec_constdet_one_flavor_rat_monomial5d_w.h, update/molecdyn/monomial/prec_constdet_one_flavor_rat_monomial_w.cc, update/molecdyn/monomial/prec_constdet_one_flavor_rat_monomial_w.h, update/molecdyn/monomial/prec_constdet_two_flavor_hasenbusch_monomial5d_w.cc, update/molecdyn/monomial/prec_constdet_two_flavor_hasenbusch_monomial5d_w.h, update/molecdyn/monomial/prec_constdet_two_flavor_hasenbusch_monomial_w.cc, update/molecdyn/monomial/prec_constdet_two_flavor_hasenbusch_monomial_w.h, update/molecdyn/monomial/prec_constdet_two_flavor_monomial5d_w.cc, update/molecdyn/monomial/prec_constdet_two_flavor_monomial5d_w.h, update/molecdyn/monomial/prec_constdet_two_flavor_monomial_w.cc, update/molecdyn/monomial/prec_constdet_two_flavor_monomial_w.h, update/molecdyn/monomial/prec_constdet_two_flavor_polynomial_monomial_w.cc, update/molecdyn/monomial/prec_constdet_two_flavor_polynomial_monomial_w.h, update/molecdyn/monomial/prec_constdet_two_flavor_polyprec_monomial_w.cc, update/molecdyn/monomial/prec_constdet_two_flavor_polyprec_monomial_w.h, update/molecdyn/monomial/prec_logdet_ee_monomial_w.cc, update/molecdyn/monomial/prec_logdet_ee_monomial_w.h, update/molecdyn/monomial/prec_logdet_two_flavor_monomial_w.cc, update/molecdyn/monomial/prec_logdet_two_flavor_monomial_w.h, update/molecdyn/monomial/two_flavor_hasenbusch_monomial5d_w.h, update/molecdyn/monomial/two_flavor_monomial5d_w.h, update/molecdyn/monomial/two_flavor_polynomial_monomial_w.h, update/molecdyn/monomial/two_flavor_polyprec_monomial_w.h, update/molecdyn/monomial/unprec_one_flavor_rat_monomial5d_w.cc, update/molecdyn/monomial/unprec_one_flavor_rat_monomial_w.cc, update/molecdyn/monomial/unprec_two_flavor_hasenbusch_monomial5d_w.cc, update/molecdyn/monomial/unprec_two_flavor_hasenbusch_monomial_w.cc, update/molecdyn/monomial/unprec_two_flavor_monomial5d_w.cc, update/molecdyn/monomial/unprec_two_flavor_monomial_w.cc, update/molecdyn/predictor/circular_buffer.h, update/molecdyn/predictor/last_solution_predictor.h, update/molecdyn/predictor/linear_extrap_predictor.cc, update/molecdyn/predictor/linear_extrap_predictor.h, update/molecdyn/predictor/lu_solve.cc, update/molecdyn/predictor/lu_solve.h, update/molecdyn/predictor/mre_extrap_predictor.cc, update/molecdyn/predictor/mre_extrap_predictor.h, update/molecdyn/predictor/predictor_aggregate.cc, update/molecdyn/predictor/zero_guess_predictor.cc, update/molecdyn/predictor/zero_guess_predictor.h: Removed dosisms. Added missing START_CODE/END_CODE. Did some indentation. 2006-08-25 19:56 edwards * lib/: actions/ferm/linop/clover_term_base_w.cc, actions/ferm/linop/clover_term_qdp_w.cc, actions/ferm/linop/prec_clover_linop_w.cc, util/gauge/reunit.cc, util/gauge/sun_proj.cc, util/gauge/sun_proj.h, util/gauge/sunfill.cc, util/gauge/sunfill.h, util/gauge/taproj.cc, util/gauge/taproj.h: More doxygen comments, adding missing, START_CODE/END_CODE, and indentation. 2006-08-25 19:46 edwards * lib/util/gauge/: conjgauge.h, constgauge.h, eesu2.h, eesu3.h, eeu1.h, expm12.h, expmat.h, expsu3.cc, gauge.h, gauge_s.h, gauge_startup.cc, hotst.h, rgauge.h, shift2.cc, shift2.h, stag_phases_s.cc, stag_phases_s.h, su2extract.h, sunfill.h, taproj.h, unit_check.cc, unit_check.h, weak_field.h: Removed dosisms. 2006-08-25 16:24 edwards * tests/: hmc/hmc.prec_wilson.out.xml, purgaug/purgaug.out.xml, purgaug/purgaug.sfnonpt.out.xml: Updated regression tests for new plaquette output. 2006-08-25 15:28 edwards * lib/meas/: glue/mesplq.h, inline/glue/inline_plaquette.cc: Added plane_plaq to output of inline measurement. 2006-08-25 13:15 edwards * lib/update/molecdyn/monomial/: gauge_monomial.h, one_flavor_rat_monomial_w.h, prec_logdet_ee_monomial_w.h, two_flavor_hasenbusch_monomial_w.h, two_flavor_monomial_w.h: Added START_CODE() and END_CODE(). 2006-08-24 17:16 tag chroma3-11-1 2006-08-24 17:16 edwards * NEWS: Info on 3.11.1 2006-08-24 17:10 edwards * aclocal.m4, configure: Induced changes 2006-08-24 17:08 edwards * configure.ac: Changed to 3.11.1 2006-08-24 17:07 edwards * tests/: chroma/eig/ritz_Hw-v1.out.xml, chroma/gfix/coulgauge/coulgauge.out.xml, chroma/glue/fuzwilp/fuzwilp.out.xml, chroma/glue/wilslp/wilslp.out.xml, chroma/hadron/bar3ptfn/bar3ptfn.out.xml, chroma/hadron/building_blocks/bb.out.xml, chroma/hadron/hadspec/hadspec.out.xml, chroma/hadron/make_source/dilute.out.xml, chroma/hadron/make_source/make_source.out.xml, chroma/hadron/make_source/source-deriv.out.xml, chroma/hadron/make_source/source-displace.out.xml, chroma/hadron/mesonspec/mesonspec.out.xml, chroma/hadron/mres/mres.out.xml, chroma/hadron/noisy_building_blocks/nbb.out.xml, chroma/hadron/propagator/prec_clover.out.xml, chroma/hadron/propagator/prec_dwf.out.xml, chroma/hadron/propagator/prec_ht_contfrac5d.out.xml, chroma/hadron/propagator/prec_ovext.out.xml, chroma/hadron/propagator/prec_ovlap_contfrac5d.out.xml, chroma/hadron/propagator/prec_parwilson.out.xml, chroma/hadron/propagator/prec_wilson-smearing.out.xml, chroma/hadron/propagator/prec_wilson-twisted.out.xml, chroma/hadron/propagator/prec_wilson.out.xml, chroma/hadron/propagator/prec_zolo_nef.out.xml, chroma/hadron/propagator/unprec-ovlap-zolo4d.out.xml, chroma/hadron/propagator/unprec-zolo-ev-multi.out.xml, chroma/hadron/propagator/unprec_clover.out.xml, chroma/hadron/propagator/unprec_dwftransf.out.xml, chroma/hadron/propagator/unprec_hamberwu.out.xml, chroma/hadron/propagator/unprec_ovext.out.xml, chroma/hadron/propagator/unprec_ovlap_contfrac5d.out.xml, chroma/hadron/propagator/unprec_zolo_nef.out.xml, chroma/hadron/seqsource/seqsource-baryon.out.xml, chroma/hadron/seqsource/seqsource-meson.out.xml, chroma/hadron/seqsource/seqsource-photon.out.xml, chroma/hadron/sink_smear/sink-deriv.out.xml, chroma/hadron/sink_smear/sink-displace.out.xml, chroma/hadron/sink_smear/sink_smearing.out.xml, chroma/hadron/spectrum/spectrum.out.xml, chroma/hadron/spectrumOct/spectrumOct-v11.out.xml, chroma/hadron/stoch_baryon/stoch_baryon.out.xml, chroma/hadron/stoch_meson/stoch_meson.out.xml, chroma/hadron_s/spectrum_s/spectrum_s.out.xml, chroma/io/nersc_read_obj/nersc_read_obj.out.xml, chroma/io/nersc_write_obj/nersc_write_obj.out.xml, chroma/io/qio_read_obj/qio_read_obj.out.xml, chroma/io/qio_write_obj/qio_write_obj.out.xml, chroma/io/szin_read_obj/szin_read_obj.out.xml, chroma/io/szin_write_obj/szin_write_obj.out.xml, chroma/schrfun/schrfun.out.xml, chroma/smear/link_smear/link_smear.out.xml, hmc/hmc.prec_wilson.out.xml, purgaug/purgaug.out.xml, purgaug/purgaug.sfnonpt.out.xml, spectrum_s/regres.pl, spectrum_s/spectrum_s.ini.xml, spectrum_s/spectrum_s.out.xml, spectrum_s/spectrum_s.xml, spectrum_s/spectrum_s_reg.xml, spectrum_s/spectrum_s_reg_test_output.xml, spectrum_s/spectrum_s_test_output.xml, t_leapfrog/t_leapfrog.aniso_spectrum.out.xml, t_leapfrog/t_leapfrog.fixed_X_action_stout.out.xml, t_leapfrog/t_leapfrog.lw.sfnonpt.out.xml, t_leapfrog/t_leapfrog.parwilson_minimal_norm_2nd_order_integrator_mts.out.xml, t_leapfrog/t_leapfrog.parwilson_minimal_norm_2nd_order_qpq_integrator_mts.out.xml, t_leapfrog/t_leapfrog.parwilson_pqp_integrator_mts.out.xml, t_leapfrog/t_leapfrog.prec_1flav_dwf.out.xml, t_leapfrog/t_leapfrog.prec_1flav_wilson.out.xml, t_leapfrog/t_leapfrog.prec_2flav_clover.out.xml, t_leapfrog/t_leapfrog.prec_2flav_clover.sfnonpt.out.xml, t_leapfrog/t_leapfrog.prec_2flav_clover_ee_oo.out.xml, t_leapfrog/t_leapfrog.prec_clover_stout.out.xml, t_leapfrog/t_leapfrog.prec_contfrac.out.xml, t_leapfrog/t_leapfrog.prec_dwf.out.xml, t_leapfrog/t_leapfrog.prec_hasenbusch_wilson.out.xml, t_leapfrog/t_leapfrog.prec_parwilson.out.xml, t_leapfrog/t_leapfrog.prec_wilson.out.xml, t_leapfrog/t_leapfrog.rect_gaugeact.out.xml, t_leapfrog/t_leapfrog.rect_gaugeact_1.out.xml, t_leapfrog/t_leapfrog.rect_gaugeact_aniso.out.xml, t_leapfrog/t_leapfrog.rect_gaugeact_c1t0.out.xml, t_leapfrog/t_leapfrog.rect_gaugeact_omit2linkT.out.xml, t_leapfrog/t_leapfrog.two_plaq_spatial_gaugeact.out.xml, t_leapfrog/t_leapfrog.unprec_clover.out.xml, t_leapfrog/t_leapfrog.unprec_dwf.out.xml, t_leapfrog/t_leapfrog.unprec_hasenbusch_wilson.out.xml, t_leapfrog/t_leapfrog.unprec_wilson.out.xml: Regenerated all canonical outputs because of the change of output from the plaquette measurement. Also, the newest QDP now has more precision on double output. 2006-08-24 17:04 edwards * lib/meas/: glue/mesplq.cc, glue/polylp.cc, glue/polylp.h, inline/glue/inline_polylp.cc: Rearranged plaquette measurement a bit. Have added measurement of all possible planes. Added an overloading of polylp. 2006-08-24 00:19 edwards * tests/chroma/hadron/: spectrum/spectrum